Wall clock time and date at job start Tue Mar 31 2020 16:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46963 * 2 1 4 4 N 1.46500 * 109.46961 * 174.86693 * 3 2 1 5 5 C 1.34771 * 120.00024 * 275.88039 * 4 3 2 6 6 O 1.21289 * 119.99874 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.00334 * 359.97438 * 5 4 3 8 8 H 1.09007 * 115.54522 * 34.33681 * 7 5 4 9 9 C 1.52993 * 117.50514 * 248.62432 * 7 5 4 10 10 C 1.53000 * 117.50155 * 179.97438 * 7 5 4 11 11 H 1.09001 * 117.49654 * 0.02562 * 10 7 5 12 12 C 1.50700 * 117.50159 * 215.00547 * 10 7 5 13 13 C 1.34507 * 125.78823 * 119.71928 * 12 10 7 14 14 C 1.41383 * 106.84357 * 179.88898 * 13 12 10 15 15 C 1.34515 * 106.83591 * 0.37391 * 14 13 12 16 16 O 1.34299 * 125.78891 * 300.02657 * 12 10 7 17 17 C 1.46502 * 119.99808 * 95.88361 * 4 3 2 18 18 H 1.08996 * 110.64026 * 188.69329 * 17 4 3 19 19 C 1.55153 * 110.71983 * 311.83540 * 17 4 3 20 20 C 1.55127 * 101.48572 * 153.73465 * 19 17 4 21 21 N 1.47422 * 104.94245 * 323.22292 * 20 19 17 22 22 C 1.36938 * 125.65039 * 204.03657 * 21 20 19 23 23 H 1.08002 * 120.00415 * 179.97438 * 22 21 20 24 24 C 1.38817 * 119.99808 * 359.96059 * 22 21 20 25 25 N 1.31620 * 119.99877 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00060 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47129 * 59.99919 * 26 24 22 28 28 H 1.48502 * 109.47216 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47094 * 300.00266 * 26 24 22 30 30 C 1.47022 * 108.70488 * 24.00132 * 21 20 19 31 31 H 1.09000 * 109.46935 * 299.99849 * 1 2 3 32 32 H 1.08999 * 109.47030 * 60.00051 * 1 2 3 33 33 H 1.08994 * 109.46618 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.47315 * 240.00286 * 2 1 3 35 35 H 1.09003 * 109.47222 * 119.99470 * 2 1 3 36 36 H 1.09000 * 109.47140 * 294.86853 * 3 2 1 37 37 H 1.09008 * 109.47171 * 54.86739 * 3 2 1 38 38 H 1.09005 * 117.49381 * 359.97438 * 9 7 5 39 39 H 1.08998 * 117.50376 * 145.01902 * 9 7 5 40 40 H 1.08005 * 126.58278 * 0.02844 * 13 12 10 41 41 H 1.07994 * 126.58403 * 180.11961 * 14 13 12 42 42 H 1.08000 * 125.78890 * 179.74688 * 15 14 13 43 43 H 1.08998 * 111.00461 * 271.93717 * 19 17 4 44 44 H 1.09005 * 111.00647 * 35.79556 * 19 17 4 45 45 H 1.08998 * 110.42166 * 204.29381 * 20 19 17 46 46 H 1.09006 * 110.30080 * 82.08719 * 20 19 17 47 47 H 0.97001 * 119.99678 * 180.02562 * 25 24 22 48 48 H 1.08995 * 109.88431 * 239.52259 * 30 21 20 49 49 H 1.09008 * 109.88235 * 118.35442 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4998 1.4444 0.1236 5 6 4.0732 1.3603 1.3403 6 8 5.2817 1.3623 1.4426 7 6 3.2128 1.2650 2.5739 8 1 2.2815 0.7108 2.4558 9 6 3.2066 2.4631 3.5253 10 6 3.9235 1.1716 3.9255 11 1 5.0135 1.1794 3.9226 12 6 3.2823 0.3210 4.9916 13 6 3.8372 -0.7539 5.5797 14 6 2.8950 -1.2416 6.5142 15 6 1.8174 -0.4405 6.4353 16 8 2.0576 0.5043 5.5114 17 6 4.3363 1.5377 -1.0755 18 1 5.3845 1.3728 -0.8265 19 6 3.8631 0.5284 -2.1548 20 6 4.3436 1.2210 -3.4571 21 7 4.1427 2.6617 -3.2178 22 6 3.9779 3.6162 -4.1859 23 1 3.8364 4.6498 -3.9066 24 6 3.9928 3.2551 -5.5262 25 7 4.1650 1.9954 -5.8665 26 14 3.7672 4.5569 -6.8467 27 1 4.8494 5.5677 -6.7353 28 1 3.8231 3.9182 -8.1862 29 1 2.4504 5.2199 -6.6684 30 6 4.1479 2.9041 -1.7678 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.7537 1.9291 -0.9324 37 1 1.6035 1.9822 0.8405 38 1 3.8253 3.3202 3.2592 39 1 2.2712 2.6976 4.0333 40 1 4.8158 -1.1642 5.3785 41 1 3.0156 -2.0961 7.1635 42 1 0.9123 -0.5402 7.0160 43 1 4.3460 -0.4398 -2.0228 44 1 2.7778 0.4266 -2.1455 45 1 3.7457 0.8905 -4.3064 46 1 5.3985 1.0088 -3.6312 47 1 4.1758 1.7432 -6.8031 48 1 3.1998 3.3467 -1.4625 49 1 4.9712 3.5689 -1.5059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713719955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:43 Heat of formation + Delta-G solvation = 19.206370 kcal Electronic energy + Delta-G solvation = -29052.753069 eV Core-core repulsion = 25175.702669 eV Total energy + Delta-G solvation = -3877.050399 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.50303 -41.52780 -39.34411 -37.48252 -37.00412 -34.51039 -33.89881 -33.36794 -31.18636 -30.44172 -29.15898 -27.24435 -26.77938 -25.14760 -24.14578 -22.75208 -22.59173 -22.04315 -21.67468 -20.96108 -19.87103 -18.97237 -18.95038 -17.98971 -17.56155 -16.86317 -16.70366 -16.26601 -16.12833 -15.70881 -15.62707 -15.49704 -14.93056 -14.36344 -14.24580 -14.09700 -13.79596 -13.72978 -13.66667 -13.47710 -13.39819 -13.22139 -13.01597 -12.88431 -12.79621 -12.67956 -12.55849 -12.19460 -12.07365 -12.02983 -11.97929 -11.80719 -11.66600 -11.51196 -11.36369 -10.88282 -10.80454 -10.75140 -9.70775 -9.28073 -8.93024 -7.78629 -5.24469 0.69571 1.38618 1.46976 1.50288 1.56567 1.67407 1.84007 2.07005 2.49680 2.81118 3.29619 3.31419 3.51649 3.64984 3.68773 3.84897 3.88890 3.96474 4.00936 4.10785 4.16383 4.19431 4.23616 4.37287 4.39878 4.51365 4.58180 4.62930 4.65261 4.73367 4.82088 4.87182 4.90289 4.95253 4.98211 5.03347 5.04183 5.06963 5.20299 5.21971 5.28632 5.42674 5.45216 5.56963 5.60612 5.61056 5.75845 6.21824 6.27331 6.38641 7.07387 7.08553 7.73906 8.37790 9.22955 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023526 B = 0.002527 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.911187 B =11077.744815 C =11432.135707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.105 3.895 4 N -0.589 5.589 5 C 0.542 3.458 6 O -0.583 6.583 7 C -0.172 4.172 8 H 0.145 0.855 9 C -0.120 4.120 10 C -0.052 4.052 11 H 0.134 0.866 12 C 0.003 3.997 13 C -0.216 4.216 14 C -0.228 4.228 15 C -0.036 4.036 16 O -0.183 6.183 17 C 0.142 3.858 18 H 0.083 0.917 19 C -0.133 4.133 20 C 0.157 3.843 21 N -0.620 5.620 22 C -0.241 4.241 23 H 0.080 0.920 24 C -0.064 4.064 25 N -0.948 5.948 26 Si 0.982 3.018 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.273 1.273 30 C 0.132 3.868 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.149 0.851 41 H 0.167 0.833 42 H 0.241 0.759 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.082 0.918 46 H -0.016 1.016 47 H 0.249 0.751 48 H 0.039 0.961 49 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 -5.998 24.724 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.017 4.017 4 N -0.318 5.318 5 C 0.332 3.668 6 O -0.464 6.464 7 C -0.193 4.193 8 H 0.163 0.837 9 C -0.157 4.157 10 C -0.071 4.071 11 H 0.152 0.848 12 C -0.047 4.047 13 C -0.235 4.235 14 C -0.246 4.246 15 C -0.102 4.102 16 O -0.080 6.080 17 C 0.037 3.963 18 H 0.101 0.899 19 C -0.172 4.172 20 C 0.032 3.968 21 N -0.347 5.347 22 C -0.370 4.370 23 H 0.098 0.902 24 C -0.256 4.256 25 N -0.597 5.597 26 Si 0.810 3.190 27 H -0.208 1.208 28 H -0.218 1.218 29 H -0.199 1.199 30 C 0.006 3.994 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.167 0.833 41 H 0.185 0.815 42 H 0.257 0.743 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.100 0.900 46 H 0.002 0.998 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -9.609 -5.730 24.458 26.896 hybrid contribution 0.701 0.272 -1.153 1.376 sum -8.909 -5.458 23.305 25.540 Atomic orbital electron populations 1.21675 0.93454 1.02588 1.02573 1.22068 0.97560 0.95900 1.02494 1.21854 0.77514 0.98281 1.04059 1.47863 1.07819 1.71348 1.04779 1.20086 0.87598 0.74731 0.84405 1.90668 1.16415 1.52406 1.86870 1.22386 1.01821 1.07322 0.87788 0.83697 1.23193 1.03648 0.90717 0.98151 1.20391 0.98595 0.98729 0.89359 0.84807 1.21267 0.84861 0.98946 0.99613 1.21841 1.02735 0.98123 1.00826 1.22152 0.94628 1.04273 1.03586 1.24815 1.02234 0.89283 0.93904 1.83962 1.31438 1.47640 1.44977 1.21789 0.95118 0.95138 0.84219 0.89864 1.23308 1.01901 0.97519 0.94478 1.21753 0.96458 0.82789 0.95844 1.44675 1.85058 1.04575 1.00397 1.19389 1.41856 0.89328 0.86430 0.90202 1.25638 1.02312 0.98669 0.99016 1.70016 1.57510 1.16309 1.15895 0.85102 0.78264 0.77829 0.77809 1.20763 1.21839 1.19913 1.21600 0.98115 0.95261 0.84467 0.91083 0.92823 0.91769 0.92260 0.91423 0.90656 0.87923 0.87370 0.84998 0.83272 0.81517 0.74330 0.90506 0.89651 0.90009 0.99786 0.94159 0.94319 0.97016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.91 71.98 0.71 -1.60 16 2 C -0.14 -2.87 5.69 30.60 0.17 -2.69 16 3 C 0.10 2.44 3.93 86.38 0.34 2.78 16 4 N -0.59 -17.49 2.48 -791.24 -1.96 -19.46 16 5 C 0.54 16.08 7.42 87.66 0.65 16.73 16 6 O -0.58 -21.89 15.65 -3.06 -0.05 -21.94 16 7 C -0.17 -3.63 4.44 -11.54 -0.05 -3.68 16 8 H 0.15 2.57 6.05 -2.38 -0.01 2.55 16 9 C -0.12 -2.09 9.87 30.61 0.30 -1.79 16 10 C -0.05 -1.08 5.75 -11.52 -0.07 -1.14 16 11 H 0.13 3.10 7.67 -2.39 -0.02 3.08 16 12 C 0.00 0.06 6.80 24.83 0.17 0.22 16 13 C -0.22 -4.13 10.81 22.19 0.24 -3.89 16 14 C -0.23 -3.36 10.91 22.19 0.24 -3.11 16 15 C -0.04 -0.45 12.09 66.97 0.81 0.36 16 16 O -0.18 -3.23 10.36 -2.46 -0.03 -3.25 16 17 C 0.14 5.33 3.30 46.18 0.15 5.49 16 18 H 0.08 3.47 7.04 -2.39 -0.02 3.45 16 19 C -0.13 -5.06 6.10 32.06 0.20 -4.86 16 20 C 0.16 7.86 5.89 86.93 0.51 8.37 16 21 N -0.62 -32.52 3.40 -691.53 -2.35 -34.87 16 22 C -0.24 -13.62 10.27 84.03 0.86 -12.76 16 23 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 24 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 25 N -0.95 -56.31 10.09 21.65 0.22 -56.09 16 26 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 27 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 C 0.13 5.73 6.77 86.73 0.59 6.32 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.41 6.03 -2.39 -0.01 1.39 16 35 H 0.07 1.29 6.90 -2.39 -0.02 1.28 16 36 H 0.07 2.05 6.70 -2.39 -0.02 2.03 16 37 H 0.10 1.84 6.98 -2.38 -0.02 1.82 16 38 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.13 1.76 7.97 -2.39 -0.02 1.75 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 42 H 0.24 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.09 3.01 5.06 -2.38 -0.01 2.99 16 45 H 0.08 4.57 5.87 -2.39 -0.01 4.56 16 46 H -0.02 -0.87 8.14 -2.38 -0.02 -0.89 16 47 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.04 1.59 6.90 -2.39 -0.02 1.58 16 49 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -71.41 388.77 5.10 -66.31 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.95 Total: 20.15 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.30 Total: 1.60 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.09 Total: -110.42 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.07 Total: -25.19 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.41 5.10 -66.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713719955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.512 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds