Wall clock time and date at job start Tue Mar 31 2020 16:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47071 * 2 1 4 4 H 1.08999 * 109.47596 * 305.00021 * 3 2 1 5 5 C 1.50709 * 109.47103 * 185.00046 * 3 2 1 6 6 O 1.21282 * 119.99818 * 239.99847 * 5 3 2 7 7 N 1.34776 * 119.99557 * 60.00414 * 5 3 2 8 8 C 1.46507 * 119.99525 * 180.02562 * 7 5 3 9 9 H 1.08996 * 112.84707 * 336.19213 * 8 7 5 10 10 C 1.53773 * 113.61263 * 107.49830 * 8 7 5 11 11 C 1.53786 * 87.08279 * 89.11529 * 10 8 7 12 12 H 1.08992 * 113.61287 * 270.88276 * 11 10 8 13 13 N 1.46497 * 113.61778 * 139.97408 * 11 10 8 14 14 C 1.36937 * 119.99983 * 107.50411 * 13 11 10 15 15 H 1.08005 * 119.99381 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00458 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00320 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46982 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47095 * 119.99431 * 18 16 14 21 21 H 1.48500 * 109.47080 * 239.99800 * 18 16 14 22 22 C 1.53773 * 113.61114 * 204.99781 * 8 7 5 23 23 C 1.50701 * 109.47115 * 65.00211 * 3 2 1 24 24 C 1.38268 * 119.94532 * 239.99531 * 23 3 2 25 25 C 1.38145 * 120.05618 * 179.97438 * 24 23 3 26 26 C 1.38726 * 119.94247 * 0.02562 * 25 24 23 27 27 O 1.35901 * 120.05513 * 180.02562 * 26 25 24 28 28 C 1.42903 * 117.00336 * 180.02562 * 27 26 25 29 29 C 1.38735 * 119.89244 * 0.27896 * 26 25 24 30 30 C 1.38148 * 119.93988 * 359.46417 * 29 26 25 31 31 H 1.08997 * 109.46597 * 299.99476 * 1 2 3 32 32 H 1.08996 * 109.47129 * 60.00260 * 1 2 3 33 33 H 1.08999 * 109.46689 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47150 * 239.99949 * 2 1 3 35 35 H 1.09002 * 109.47217 * 120.00449 * 2 1 3 36 36 H 0.96991 * 120.00236 * 359.97438 * 7 5 3 37 37 H 1.09004 * 113.61062 * 203.66142 * 10 8 7 38 38 H 1.08990 * 113.62203 * 334.56725 * 10 8 7 39 39 H 0.96996 * 120.00389 * 287.51145 * 13 11 10 40 40 H 0.96999 * 119.99620 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.61856 * 25.43239 * 22 8 7 42 42 H 1.08999 * 113.61442 * 156.25010 * 22 8 7 43 43 H 1.08001 * 119.97037 * 0.03098 * 24 23 3 44 44 H 1.08001 * 120.02745 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47382 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.46938 * 59.99705 * 28 27 26 47 47 H 1.09004 * 109.46926 * 299.99826 * 28 27 26 48 48 H 1.07999 * 120.03086 * 179.72009 * 29 26 25 49 49 H 1.07996 * 119.96792 * 180.27468 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 8 4.2217 1.9435 0.7477 7 7 4.1297 0.8911 -1.2032 8 6 5.5899 0.8924 -1.3234 9 1 6.0615 1.6856 -0.7434 10 6 6.2266 -0.4910 -1.1104 11 6 6.0493 -0.7182 -2.6210 12 1 5.0886 -1.1595 -2.8863 13 7 7.1833 -1.4008 -3.2489 14 6 7.0609 -2.7043 -3.6505 15 1 6.1281 -3.2288 -3.5045 16 6 8.1354 -3.3513 -4.2450 17 7 9.2719 -2.7117 -4.4232 18 14 7.9682 -5.1291 -4.7934 19 1 6.6001 -5.6162 -4.4830 20 1 8.2066 -5.2204 -6.2563 21 1 8.9650 -5.9642 -4.0763 22 6 6.0884 0.8113 -2.7758 23 6 1.6414 2.1162 1.2877 24 6 0.8401 3.2426 1.2580 25 6 0.4728 3.8617 2.4371 26 6 0.9092 3.3526 3.6516 27 8 0.5488 3.9596 4.8129 28 6 1.0353 3.3808 6.0256 29 6 1.7183 2.2260 3.6784 30 6 2.0784 1.6074 2.4968 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.5861 0.4916 -1.9001 37 1 7.2691 -0.4479 -0.7947 38 1 5.6243 -1.1589 -0.4947 39 1 8.0208 -0.9296 -3.3802 40 1 10.0227 -3.1637 -4.8390 41 1 5.3744 1.1948 -3.5046 42 1 7.0925 1.2118 -2.9157 43 1 0.5003 3.6382 0.3123 44 1 -0.1534 4.7413 2.4134 45 1 0.6752 3.9611 6.8752 46 1 2.1252 3.3853 6.0187 47 1 0.6766 2.3548 6.1079 48 1 2.0629 1.8304 4.6224 49 1 2.7045 0.7278 2.5174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713967255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:17 Heat of formation + Delta-G solvation = -24.985159 kcal Electronic energy + Delta-G solvation = -28051.482540 eV Core-core repulsion = 24172.515852 eV Total energy + Delta-G solvation = -3878.966688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74077 -39.88980 -38.48298 -37.34776 -34.97078 -33.99274 -32.46552 -31.24449 -30.45159 -29.90807 -28.09514 -26.76974 -25.13121 -24.49775 -23.28050 -22.46584 -22.28456 -21.59093 -20.01696 -18.95796 -18.38178 -17.35858 -17.07084 -16.52980 -16.05117 -15.98054 -15.36336 -15.09018 -14.90898 -14.64044 -14.33845 -14.21762 -13.90448 -13.82483 -13.60195 -13.40170 -12.82377 -12.79332 -12.66180 -12.30921 -12.26408 -12.04387 -11.90885 -11.86607 -11.62321 -11.45132 -11.18364 -10.99102 -10.93492 -10.86789 -10.79009 -10.32423 -10.20762 -9.92691 -9.67269 -9.57113 -9.11457 -8.92887 -8.76328 -8.26478 -7.00050 -5.82026 -3.11017 1.18809 1.26006 2.67980 3.02180 3.20154 3.39841 3.45401 3.47780 3.66729 4.37311 4.49167 4.55639 4.64902 4.70593 4.78228 4.84140 4.87129 4.98262 5.05074 5.11808 5.15266 5.21233 5.22092 5.24361 5.35599 5.44017 5.48086 5.49076 5.54935 5.74693 5.84503 5.85836 5.87155 5.92105 6.00454 6.07531 6.15681 6.20718 6.24701 6.31564 6.47167 6.51759 6.56369 6.62367 6.69401 7.07759 7.16504 7.62478 7.65656 8.32004 8.36364 9.47647 10.05243 10.39462 11.40327 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.002078 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.246821 B =13470.298900 C =13719.250502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.064 4.064 4 H 0.103 0.897 5 C 0.517 3.483 6 O -0.534 6.534 7 N -0.706 5.706 8 C 0.116 3.884 9 H 0.095 0.905 10 C -0.175 4.175 11 C 0.167 3.833 12 H 0.073 0.927 13 N -0.712 5.712 14 C -0.244 4.244 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.160 4.160 23 C -0.096 4.096 24 C -0.073 4.073 25 C -0.155 4.155 26 C 0.123 3.877 27 O -0.321 6.321 28 C 0.028 3.972 29 C -0.208 4.208 30 C -0.043 4.043 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.386 0.614 40 H 0.255 0.745 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.126 0.874 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.916 12.085 14.673 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.086 4.086 4 H 0.121 0.879 5 C 0.302 3.698 6 O -0.410 6.410 7 N -0.357 5.357 8 C 0.010 3.990 9 H 0.113 0.887 10 C -0.218 4.218 11 C 0.055 3.945 12 H 0.091 0.909 13 N -0.350 5.350 14 C -0.375 4.375 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.200 4.200 23 C -0.097 4.097 24 C -0.091 4.091 25 C -0.174 4.174 26 C 0.078 3.922 27 O -0.234 6.234 28 C -0.068 4.068 29 C -0.226 4.226 30 C -0.061 4.061 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.144 0.856 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -20.560 12.412 15.260 28.454 hybrid contribution 0.323 -1.233 -0.526 1.379 sum -20.236 11.180 14.735 27.415 Atomic orbital electron populations 1.21762 0.94764 1.01967 1.02211 1.21566 0.96893 0.93473 1.03244 1.20335 0.92659 0.98297 0.97285 0.87853 1.20454 0.89871 0.77666 0.81763 1.90711 1.65363 1.45132 1.39824 1.45718 1.07438 1.59618 1.22882 1.21809 0.79329 0.99470 0.98353 0.88744 1.24293 1.00687 0.95047 1.01749 1.21609 0.92579 0.89711 0.90587 0.90890 1.42410 1.11034 1.11406 1.70171 1.19331 0.97654 0.88417 1.32129 0.91073 1.24778 0.96029 0.98461 1.01678 1.69670 1.02714 1.36344 1.49182 0.86118 0.77238 0.84778 0.78043 1.20537 1.21833 1.21834 1.23857 1.01602 1.00081 0.94412 1.19150 1.00091 0.96869 0.93567 1.20793 0.96646 0.94187 0.97480 1.20307 1.04955 1.02482 0.89611 1.19028 0.94849 0.92183 0.86106 1.86045 1.70962 1.53443 1.12981 1.23045 0.99706 0.99259 0.84755 1.21184 1.03646 0.98311 0.99482 1.20699 0.95681 0.98646 0.91063 0.92310 0.92483 0.92379 0.90842 0.91144 0.76592 0.89688 0.92487 0.78015 0.93474 0.91796 0.89109 0.85465 0.85365 0.88354 0.92571 0.92673 0.85637 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.73 37.16 0.36 -0.70 16 2 C -0.11 -0.95 5.24 -26.73 -0.14 -1.09 16 3 C -0.06 -0.62 2.38 -92.92 -0.22 -0.84 16 4 H 0.10 0.79 7.87 -51.93 -0.41 0.38 16 5 C 0.52 6.72 7.02 -10.98 -0.08 6.64 16 6 O -0.53 -9.02 14.70 5.56 0.08 -8.94 16 7 N -0.71 -8.72 5.12 -53.02 -0.27 -8.99 16 8 C 0.12 1.72 4.32 -67.12 -0.29 1.43 16 9 H 0.09 1.51 7.46 -51.93 -0.39 1.13 16 10 C -0.18 -3.04 7.68 -25.92 -0.20 -3.24 16 11 C 0.17 3.14 4.36 -67.11 -0.29 2.85 16 12 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 13 N -0.71 -17.39 5.40 -52.64 -0.28 -17.67 16 14 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 15 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 18 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.16 -2.49 7.58 -25.92 -0.20 -2.68 16 23 C -0.10 -1.02 3.38 -104.60 -0.35 -1.38 16 24 C -0.07 -0.70 9.66 -39.60 -0.38 -1.09 16 25 C -0.15 -1.57 9.99 -39.44 -0.39 -1.96 16 26 C 0.12 1.34 6.69 -39.22 -0.26 1.08 16 27 O -0.32 -3.25 10.50 -19.43 -0.20 -3.46 16 28 C 0.03 0.18 9.81 101.05 0.99 1.17 16 29 C -0.21 -2.22 9.04 -39.43 -0.36 -2.58 16 30 C -0.04 -0.49 7.86 -39.60 -0.31 -0.80 16 31 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.57 7.43 -51.93 -0.39 0.18 16 35 H 0.07 0.65 7.22 -51.93 -0.38 0.27 16 36 H 0.40 4.04 8.06 -40.82 -0.33 3.71 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.39 10.04 7.92 -40.82 -0.32 9.72 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 43 H 0.13 0.92 7.94 -52.49 -0.42 0.51 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 47 H 0.05 0.31 7.67 -51.93 -0.40 -0.09 16 48 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 49 H 0.12 1.42 7.48 -52.49 -0.39 1.03 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -33.12 399.52 -9.20 -42.32 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.88 Total: 11.22 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.37 Total: -10.45 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.17 Total: -53.75 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.12 Total: -12.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.12 -9.20 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713967255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.333 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds