Wall clock time and date at job start Tue Mar 31 2020 16:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47071 * 2 1 4 4 H 1.08999 * 109.47596 * 305.00021 * 3 2 1 5 5 C 1.50709 * 109.47103 * 185.00046 * 3 2 1 6 6 O 1.21282 * 119.99818 * 239.99847 * 5 3 2 7 7 N 1.34776 * 119.99557 * 60.00414 * 5 3 2 8 8 C 1.46507 * 119.99525 * 180.02562 * 7 5 3 9 9 H 1.08996 * 112.84707 * 336.19213 * 8 7 5 10 10 C 1.53773 * 113.61263 * 107.49830 * 8 7 5 11 11 C 1.53786 * 87.08279 * 89.11529 * 10 8 7 12 12 H 1.08992 * 113.61287 * 270.88276 * 11 10 8 13 13 N 1.46497 * 113.61778 * 139.97408 * 11 10 8 14 14 C 1.36937 * 119.99983 * 107.50411 * 13 11 10 15 15 H 1.08005 * 119.99381 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00458 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99596 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00320 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46982 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47095 * 119.99431 * 18 16 14 21 21 H 1.48500 * 109.47080 * 239.99800 * 18 16 14 22 22 C 1.53773 * 113.61114 * 204.99781 * 8 7 5 23 23 C 1.50701 * 109.47115 * 65.00211 * 3 2 1 24 24 C 1.38268 * 119.94532 * 239.99531 * 23 3 2 25 25 C 1.38145 * 120.05618 * 179.97438 * 24 23 3 26 26 C 1.38726 * 119.94247 * 0.02562 * 25 24 23 27 27 O 1.35901 * 120.05513 * 180.02562 * 26 25 24 28 28 C 1.42903 * 117.00336 * 180.02562 * 27 26 25 29 29 C 1.38735 * 119.89244 * 0.27896 * 26 25 24 30 30 C 1.38148 * 119.93988 * 359.46417 * 29 26 25 31 31 H 1.08997 * 109.46597 * 299.99476 * 1 2 3 32 32 H 1.08996 * 109.47129 * 60.00260 * 1 2 3 33 33 H 1.08999 * 109.46689 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47150 * 239.99949 * 2 1 3 35 35 H 1.09002 * 109.47217 * 120.00449 * 2 1 3 36 36 H 0.96991 * 120.00236 * 359.97438 * 7 5 3 37 37 H 1.09004 * 113.61062 * 203.66142 * 10 8 7 38 38 H 1.08990 * 113.62203 * 334.56725 * 10 8 7 39 39 H 0.96996 * 120.00389 * 287.51145 * 13 11 10 40 40 H 0.96999 * 119.99620 * 180.02562 * 17 16 14 41 41 H 1.09001 * 113.61856 * 25.43239 * 22 8 7 42 42 H 1.08999 * 113.61442 * 156.25010 * 22 8 7 43 43 H 1.08001 * 119.97037 * 0.03098 * 24 23 3 44 44 H 1.08001 * 120.02745 * 180.02562 * 25 24 23 45 45 H 1.09002 * 109.47382 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.46938 * 59.99705 * 28 27 26 47 47 H 1.09004 * 109.46926 * 299.99826 * 28 27 26 48 48 H 1.07999 * 120.03086 * 179.72009 * 29 26 25 49 49 H 1.07996 * 119.96792 * 180.27468 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 8 4.2217 1.9435 0.7477 7 7 4.1297 0.8911 -1.2032 8 6 5.5899 0.8924 -1.3234 9 1 6.0615 1.6856 -0.7434 10 6 6.2266 -0.4910 -1.1104 11 6 6.0493 -0.7182 -2.6210 12 1 5.0886 -1.1595 -2.8863 13 7 7.1833 -1.4008 -3.2489 14 6 7.0609 -2.7043 -3.6505 15 1 6.1281 -3.2288 -3.5045 16 6 8.1354 -3.3513 -4.2450 17 7 9.2719 -2.7117 -4.4232 18 14 7.9682 -5.1291 -4.7934 19 1 6.6001 -5.6162 -4.4830 20 1 8.2066 -5.2204 -6.2563 21 1 8.9650 -5.9642 -4.0763 22 6 6.0884 0.8113 -2.7758 23 6 1.6414 2.1162 1.2877 24 6 0.8401 3.2426 1.2580 25 6 0.4728 3.8617 2.4371 26 6 0.9092 3.3526 3.6516 27 8 0.5488 3.9596 4.8129 28 6 1.0353 3.3808 6.0256 29 6 1.7183 2.2260 3.6784 30 6 2.0784 1.6074 2.4968 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 3.5861 0.4916 -1.9001 37 1 7.2691 -0.4479 -0.7947 38 1 5.6243 -1.1589 -0.4947 39 1 8.0208 -0.9296 -3.3802 40 1 10.0227 -3.1637 -4.8390 41 1 5.3744 1.1948 -3.5046 42 1 7.0925 1.2118 -2.9157 43 1 0.5003 3.6382 0.3123 44 1 -0.1534 4.7413 2.4134 45 1 0.6752 3.9611 6.8752 46 1 2.1252 3.3853 6.0187 47 1 0.6766 2.3548 6.1079 48 1 2.0629 1.8304 4.6224 49 1 2.7045 0.7278 2.5174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713967255.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:16 Heat of formation + Delta-G solvation = -45.626987 kcal Electronic energy + Delta-G solvation = -28052.377637 eV Core-core repulsion = 24172.515852 eV Total energy + Delta-G solvation = -3879.861785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64870 -40.83747 -39.62103 -38.30669 -35.82140 -35.65609 -33.89846 -32.00908 -31.75859 -31.13908 -28.76034 -27.54958 -26.54149 -26.25261 -24.06566 -23.91410 -22.98678 -22.63926 -20.91903 -20.34907 -19.17139 -19.08200 -18.21488 -17.37840 -17.12395 -16.71307 -16.62708 -16.22209 -15.99762 -15.72876 -15.52462 -15.33706 -15.08499 -14.97230 -14.54782 -14.27095 -14.16417 -13.67511 -13.49384 -13.40367 -13.37839 -13.31140 -12.89158 -12.88399 -12.83741 -12.62271 -12.50733 -12.11454 -12.09668 -11.87481 -11.83663 -11.74126 -11.62293 -11.58083 -11.18141 -10.84474 -10.73739 -9.98017 -9.88903 -9.03446 -8.98003 -7.94303 -5.22625 0.42364 0.46283 1.48307 1.48912 1.58690 1.65753 2.18677 2.39535 2.56993 2.85932 3.37510 3.59330 3.70584 3.75754 3.86929 3.92273 3.97598 4.00284 4.07794 4.26830 4.32588 4.34464 4.34642 4.35990 4.43264 4.53730 4.56688 4.65366 4.71999 4.76345 4.78839 4.92234 4.92481 4.95112 5.10993 5.14458 5.16912 5.22651 5.23943 5.29111 5.34609 5.41845 5.46551 5.52270 5.69470 5.74285 5.83716 6.27906 6.44843 6.62818 7.31236 7.34016 8.11014 8.32984 9.29188 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.002078 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.246821 B =13470.298900 C =13719.250502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.054 4.054 4 H 0.133 0.867 5 C 0.516 3.484 6 O -0.576 6.576 7 N -0.696 5.696 8 C 0.135 3.865 9 H 0.085 0.915 10 C -0.173 4.173 11 C 0.155 3.845 12 H 0.086 0.914 13 N -0.728 5.728 14 C -0.240 4.240 15 H 0.080 0.920 16 C -0.079 4.079 17 N -0.970 5.970 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.298 1.298 22 C -0.143 4.143 23 C -0.106 4.106 24 C -0.072 4.072 25 C -0.164 4.164 26 C 0.111 3.889 27 O -0.335 6.335 28 C 0.020 3.980 29 C -0.218 4.218 30 C -0.060 4.060 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.155 0.845 44 H 0.143 0.857 45 H 0.121 0.879 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.135 0.865 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.564 12.451 14.274 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.075 4.075 4 H 0.151 0.849 5 C 0.304 3.696 6 O -0.455 6.455 7 N -0.348 5.348 8 C 0.029 3.971 9 H 0.104 0.896 10 C -0.215 4.215 11 C 0.045 3.955 12 H 0.104 0.896 13 N -0.365 5.365 14 C -0.372 4.372 15 H 0.098 0.902 16 C -0.271 4.271 17 N -0.621 5.621 18 Si 0.801 3.199 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.225 1.225 22 C -0.183 4.183 23 C -0.107 4.107 24 C -0.090 4.090 25 C -0.182 4.182 26 C 0.066 3.934 27 O -0.249 6.249 28 C -0.075 4.075 29 C -0.236 4.236 30 C -0.079 4.079 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.173 0.827 44 H 0.161 0.839 45 H 0.139 0.861 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.153 0.847 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.287 12.781 14.876 30.445 hybrid contribution 1.095 -1.286 -0.278 1.712 sum -22.192 11.495 14.597 28.943 Atomic orbital electron populations 1.21721 0.93539 1.02366 1.02577 1.21564 0.97865 0.92476 1.03020 1.20352 0.89850 0.99429 0.97885 0.84931 1.21085 0.91244 0.76431 0.80846 1.90701 1.66616 1.46913 1.41240 1.45602 1.06298 1.59496 1.23366 1.21450 0.80824 0.97350 0.97494 0.89646 1.24141 0.99980 0.96859 1.00482 1.21956 0.91327 0.91411 0.90800 0.89649 1.42618 1.12116 1.10969 1.70785 1.19749 0.97583 0.89566 1.30301 0.90214 1.25584 0.96042 1.02466 1.03043 1.69824 1.03442 1.37863 1.50997 0.85095 0.77646 0.80130 0.77031 1.18738 1.22130 1.22505 1.23668 1.02043 0.97173 0.95396 1.19324 1.00384 0.97393 0.93585 1.21103 0.95875 0.93456 0.98525 1.20624 1.05006 1.02972 0.89635 1.19247 0.95007 0.92307 0.86838 1.86024 1.71262 1.53978 1.13638 1.23292 0.99881 1.00174 0.84122 1.21333 1.03898 0.98572 0.99834 1.20758 0.96270 0.98798 0.92030 0.93085 0.90923 0.92018 0.89884 0.92590 0.74867 0.91580 0.92585 0.79467 0.94128 0.89378 0.89819 0.82709 0.83933 0.86107 0.92569 0.91870 0.84679 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.73 71.98 0.70 -0.99 16 2 C -0.11 -1.61 5.24 30.59 0.16 -1.45 16 3 C -0.05 -0.91 2.38 -12.29 -0.03 -0.94 16 4 H 0.13 1.48 7.87 -2.39 -0.02 1.46 16 5 C 0.52 12.59 7.02 87.66 0.62 13.20 16 6 O -0.58 -19.20 14.70 -3.04 -0.04 -19.25 16 7 N -0.70 -15.65 5.12 -440.04 -2.25 -17.90 16 8 C 0.14 3.85 4.32 45.51 0.20 4.05 16 9 H 0.09 2.68 7.46 -2.39 -0.02 2.66 16 10 C -0.17 -5.91 7.68 31.12 0.24 -5.67 16 11 C 0.15 5.63 4.36 45.52 0.20 5.83 16 12 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 13 N -0.73 -35.49 5.40 -320.44 -1.73 -37.22 16 14 C -0.24 -12.94 9.97 84.03 0.84 -12.10 16 15 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 16 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 17 N -0.97 -59.00 13.06 21.65 0.28 -58.71 16 18 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 22 C -0.14 -4.22 7.58 31.12 0.24 -3.98 16 23 C -0.11 -2.11 3.38 -19.85 -0.07 -2.18 16 24 C -0.07 -1.23 9.66 22.25 0.22 -1.02 16 25 C -0.16 -3.09 9.99 22.36 0.22 -2.86 16 26 C 0.11 2.35 6.69 22.51 0.15 2.50 16 27 O -0.33 -6.55 10.50 -92.43 -0.97 -7.52 16 28 C 0.02 0.24 9.81 113.37 1.11 1.35 16 29 C -0.22 -4.66 9.04 22.37 0.20 -4.46 16 30 C -0.06 -1.38 7.86 22.25 0.17 -1.21 16 31 H 0.05 0.69 7.38 -2.39 -0.02 0.67 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 1.04 7.43 -2.38 -0.02 1.02 16 35 H 0.06 0.98 7.22 -2.39 -0.02 0.96 16 36 H 0.41 7.01 8.06 -92.71 -0.75 6.27 16 37 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 38 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.37 19.79 7.92 -92.71 -0.73 19.05 16 40 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 43 H 0.16 1.69 7.94 -2.91 -0.02 1.67 16 44 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.67 7.65 -2.39 -0.02 0.65 16 47 H 0.06 0.65 7.67 -2.38 -0.02 0.63 16 48 H 0.14 2.43 6.30 -2.91 -0.02 2.41 16 49 H 0.11 2.68 7.48 -2.91 -0.02 2.66 16 Total: -1.00 -72.17 399.52 2.42 -69.75 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.52 Total: 37.34 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 5.63 Total: -13.96 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -3.70 Total: -113.83 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -1.01 Total: -26.77 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.17 2.42 -69.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713967255.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.128 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds