Wall clock time and date at job start Tue Mar 31 2020 16:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46794 * 2 1 4 4 H 1.08996 * 109.46922 * 54.58927 * 3 2 1 5 5 C 1.50703 * 109.47001 * 174.58330 * 3 2 1 6 6 O 1.21284 * 119.99858 * 123.08516 * 5 3 2 7 7 N 1.34773 * 120.00191 * 303.09052 * 5 3 2 8 8 C 1.46507 * 119.99813 * 175.42226 * 7 5 3 9 9 H 1.08989 * 112.90771 * 336.25172 * 8 7 5 10 10 C 1.53783 * 113.61227 * 107.50525 * 8 7 5 11 11 C 1.53780 * 87.08197 * 139.97940 * 10 8 7 12 12 H 1.09003 * 113.68978 * 220.01112 * 11 10 8 13 13 N 1.46492 * 113.61566 * 89.11321 * 11 10 8 14 14 C 1.36939 * 120.00236 * 107.50214 * 13 11 10 15 15 H 1.07999 * 119.99726 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00370 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99682 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99932 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47067 * 269.99941 * 18 16 14 20 20 H 1.48497 * 109.47258 * 29.99710 * 18 16 14 21 21 H 1.48494 * 109.47194 * 150.00237 * 18 16 14 22 22 C 1.53783 * 113.61006 * 204.99694 * 8 7 5 23 23 C 1.50701 * 109.47380 * 294.58596 * 3 2 1 24 24 C 1.38268 * 119.94115 * 299.72654 * 23 3 2 25 25 C 1.38145 * 120.04945 * 179.72384 * 24 23 3 26 26 C 1.38724 * 119.94684 * 0.55135 * 25 24 23 27 27 O 1.35902 * 120.05724 * 179.74933 * 26 25 24 28 28 C 1.42894 * 116.99742 * 359.97392 * 27 26 25 29 29 C 1.38739 * 119.88790 * 359.72326 * 26 25 24 30 30 C 1.38141 * 119.94492 * 0.02562 * 29 26 25 31 31 H 1.08997 * 109.47593 * 295.28166 * 1 2 3 32 32 H 1.09001 * 109.47218 * 55.28161 * 1 2 3 33 33 H 1.08999 * 109.47060 * 175.27936 * 1 2 3 34 34 H 1.08996 * 109.47374 * 240.00558 * 2 1 3 35 35 H 1.08999 * 109.47579 * 120.00198 * 2 1 3 36 36 H 0.96997 * 120.00481 * 355.42056 * 7 5 3 37 37 H 1.08998 * 113.61730 * 25.42735 * 10 8 7 38 38 H 1.09000 * 113.60943 * 254.52929 * 10 8 7 39 39 H 0.97001 * 120.00525 * 287.50542 * 13 11 10 40 40 H 0.96997 * 120.00471 * 0.02562 * 17 16 14 41 41 H 1.09007 * 113.61327 * 105.47718 * 22 8 7 42 42 H 1.08994 * 113.62016 * 334.57319 * 22 8 7 43 43 H 1.07997 * 119.97289 * 0.02562 * 24 23 3 44 44 H 1.08005 * 120.02743 * 180.27398 * 25 24 23 45 45 H 1.08999 * 109.47293 * 60.00216 * 28 27 26 46 46 H 1.09006 * 109.46979 * 180.02562 * 28 27 26 47 47 H 1.08992 * 109.47214 * 299.99821 * 28 27 26 48 48 H 1.07995 * 120.02465 * 179.97438 * 29 26 25 49 49 H 1.07999 * 119.97447 * 180.02562 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5995 1.9835 0.8375 5 6 3.5409 1.4447 0.1341 6 8 4.2240 1.9910 -0.7061 7 7 4.1243 0.8396 1.1876 8 6 5.5847 0.7541 1.2670 9 1 6.0672 0.8221 0.2921 10 6 6.1996 1.6854 2.3250 11 6 7.1636 0.5359 2.6628 12 1 7.3528 0.4223 3.7302 13 7 8.3924 0.5470 1.8652 14 6 9.5803 0.9088 2.4427 15 1 9.6112 1.1854 3.4862 16 6 10.7445 0.9198 1.6869 17 7 10.7066 0.5831 0.4150 18 14 12.3649 1.4126 2.4748 19 1 12.5567 2.8787 2.3371 20 1 12.3461 1.0490 3.9145 21 1 13.4801 0.7020 1.7993 22 6 6.0873 -0.4206 2.1227 23 6 1.6500 2.1133 -1.2920 24 6 2.0991 1.6044 -2.4966 25 6 1.7384 2.2141 -3.6826 26 6 0.9343 3.3444 -3.6637 27 8 0.5823 3.9489 -4.8288 28 6 1.0765 3.3670 -6.0367 29 6 0.4897 3.8563 -2.4533 30 6 0.8489 3.2400 -1.2703 31 1 -0.3634 0.4389 0.9292 32 1 -0.3634 0.5853 -0.8447 33 1 -0.3633 -1.0242 -0.0846 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.5773 0.4606 1.8933 37 1 5.5165 1.9352 3.1368 38 1 6.6940 2.5601 1.9023 39 1 8.3647 0.2982 0.9281 40 1 9.8652 0.3276 0.0058 41 1 6.4913 -1.2462 1.5367 42 1 5.3736 -0.7466 2.8792 43 1 2.7284 0.7268 -2.5106 44 1 2.0858 1.8137 -4.6237 45 1 0.7178 2.3410 -6.1191 46 1 0.7227 3.9456 -6.8901 47 1 2.1664 3.3708 -6.0224 48 1 -0.1361 4.7363 -2.4359 49 1 0.5027 3.6378 -0.3278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713967256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:20 Heat of formation + Delta-G solvation = -24.055757 kcal Electronic energy + Delta-G solvation = -28164.596776 eV Core-core repulsion = 24285.670390 eV Total energy + Delta-G solvation = -3878.926386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70411 -39.83421 -38.52321 -37.38190 -34.99254 -34.19743 -32.68900 -31.22283 -30.45243 -29.48286 -28.07936 -26.77889 -25.18900 -24.06296 -23.27736 -22.97208 -22.28306 -21.41751 -20.00256 -18.90252 -18.34576 -17.53497 -17.11860 -16.57865 -16.14090 -15.94020 -15.44516 -15.08605 -14.94322 -14.65222 -14.25354 -14.24374 -13.88473 -13.81864 -13.59023 -13.42870 -12.88274 -12.82323 -12.77897 -12.28905 -12.25253 -12.17927 -12.04503 -11.89923 -11.51330 -11.46301 -11.16013 -11.02860 -10.86679 -10.77151 -10.62503 -10.31006 -10.02549 -9.94398 -9.58784 -9.19250 -9.08810 -8.92412 -8.72016 -8.23469 -7.07772 -6.12396 -3.13442 1.21597 1.28433 2.71655 3.05791 3.26307 3.51652 3.56793 3.69836 3.70513 4.36260 4.49564 4.64545 4.67494 4.71246 4.75814 4.87547 4.90616 4.94481 5.00984 5.11482 5.17501 5.19253 5.20912 5.24102 5.29869 5.36301 5.45438 5.48494 5.54218 5.67145 5.80190 5.82103 5.82797 5.88707 5.95853 6.01541 6.09601 6.14301 6.22922 6.29178 6.48593 6.55285 6.59035 6.63193 6.72187 6.95651 7.19711 7.64672 7.80840 8.36095 8.72964 9.19163 10.05366 10.18978 11.35569 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.002366 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.589021 B =11832.197736 C =13123.532620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.065 4.065 4 H 0.102 0.898 5 C 0.512 3.488 6 O -0.528 6.528 7 N -0.718 5.718 8 C 0.127 3.873 9 H 0.109 0.891 10 C -0.183 4.183 11 C 0.177 3.823 12 H 0.069 0.931 13 N -0.717 5.717 14 C -0.336 4.336 15 H 0.067 0.933 16 C -0.044 4.044 17 N -0.941 5.941 18 Si 1.084 2.916 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.288 1.288 22 C -0.165 4.165 23 C -0.097 4.097 24 C -0.044 4.044 25 C -0.207 4.207 26 C 0.124 3.876 27 O -0.320 6.320 28 C 0.027 3.973 29 C -0.154 4.154 30 C -0.073 4.073 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.395 0.605 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.369 0.631 40 H 0.256 0.744 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.054 0.946 46 H 0.098 0.902 47 H 0.056 0.944 48 H 0.129 0.871 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.800 0.166 -4.192 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.086 4.086 4 H 0.120 0.880 5 C 0.297 3.703 6 O -0.403 6.403 7 N -0.368 5.368 8 C 0.023 3.977 9 H 0.127 0.873 10 C -0.226 4.226 11 C 0.064 3.936 12 H 0.087 0.913 13 N -0.357 5.357 14 C -0.467 4.467 15 H 0.085 0.915 16 C -0.241 4.241 17 N -0.586 5.586 18 Si 0.915 3.085 19 H -0.222 1.222 20 H -0.221 1.221 21 H -0.214 1.214 22 C -0.205 4.205 23 C -0.097 4.097 24 C -0.062 4.062 25 C -0.226 4.226 26 C 0.079 3.921 27 O -0.234 6.234 28 C -0.068 4.068 29 C -0.173 4.173 30 C -0.091 4.091 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.229 0.771 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.202 0.798 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.073 0.927 46 H 0.117 0.883 47 H 0.075 0.925 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.699 0.982 -4.914 25.202 hybrid contribution -1.784 -0.543 0.203 1.876 sum -26.483 0.439 -4.711 26.902 Atomic orbital electron populations 1.21771 0.94812 1.01931 1.02264 1.21551 0.96820 0.93650 1.02978 1.20343 0.92939 0.98119 0.97234 0.87951 1.20513 0.89854 0.78297 0.81653 1.90754 1.65054 1.43019 1.41478 1.46112 1.08034 1.59034 1.23651 1.22578 0.78034 0.97387 0.99685 0.87311 1.24296 0.99789 1.00431 0.98070 1.20840 0.85285 0.92074 0.95444 0.91309 1.42200 1.03036 1.80847 1.09579 1.20096 0.87044 1.43244 0.96318 0.91476 1.25828 1.01541 1.00573 0.96207 1.70844 1.28287 1.48110 1.11360 0.83180 0.75282 0.76115 0.73941 1.22243 1.22085 1.21353 1.23909 0.99589 0.97645 0.99316 1.19138 1.00075 0.96977 0.93537 1.20682 0.95685 0.98748 0.91109 1.21184 1.03628 0.98294 0.99450 1.19026 0.94876 0.92116 0.86071 1.86044 1.70947 1.53418 1.12984 1.23048 0.99707 0.99163 0.84870 1.20310 1.04913 1.02448 0.89635 1.20782 0.96737 0.94152 0.97423 0.92538 0.92153 0.92476 0.91211 0.91101 0.77056 0.91164 0.91176 0.79769 0.93282 0.91087 0.90178 0.86090 0.85586 0.92698 0.88330 0.92499 0.85336 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.80 37.15 0.36 -0.64 16 2 C -0.11 -0.89 5.24 -26.73 -0.14 -1.03 16 3 C -0.06 -0.65 2.38 -92.92 -0.22 -0.87 16 4 H 0.10 0.82 7.87 -51.93 -0.41 0.42 16 5 C 0.51 7.15 7.03 -10.99 -0.08 7.07 16 6 O -0.53 -9.95 14.84 5.55 0.08 -9.87 16 7 N -0.72 -9.10 5.15 -53.01 -0.27 -9.37 16 8 C 0.13 2.08 4.09 -67.11 -0.27 1.80 16 9 H 0.11 2.15 7.52 -51.93 -0.39 1.76 16 10 C -0.18 -3.27 7.68 -25.92 -0.20 -3.47 16 11 C 0.18 3.48 4.56 -67.12 -0.31 3.18 16 12 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 13 N -0.72 -18.06 5.31 -52.64 -0.28 -18.34 16 14 C -0.34 -9.51 9.97 -15.06 -0.15 -9.66 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 17 N -0.94 -29.51 13.70 55.49 0.76 -28.75 16 18 Si 1.08 26.18 29.92 -169.99 -5.09 21.09 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C -0.16 -2.56 7.58 -25.92 -0.20 -2.76 16 23 C -0.10 -1.10 3.30 -104.60 -0.35 -1.45 16 24 C -0.04 -0.54 7.90 -39.60 -0.31 -0.85 16 25 C -0.21 -2.39 9.04 -39.44 -0.36 -2.75 16 26 C 0.12 1.45 6.69 -39.22 -0.26 1.19 16 27 O -0.32 -3.51 10.50 -19.43 -0.20 -3.71 16 28 C 0.03 0.20 9.81 101.05 0.99 1.19 16 29 C -0.15 -1.69 9.99 -39.43 -0.39 -2.08 16 30 C -0.07 -0.76 9.66 -39.61 -0.38 -1.14 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.45 7.25 -51.93 -0.38 0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.61 7.22 -51.93 -0.38 0.24 16 35 H 0.07 0.48 7.34 -51.93 -0.38 0.09 16 36 H 0.40 3.67 8.04 -40.82 -0.33 3.34 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.37 9.66 6.73 -40.82 -0.27 9.39 16 40 H 0.26 7.93 6.77 -40.82 -0.28 7.66 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 43 H 0.12 1.49 7.53 -52.49 -0.40 1.10 16 44 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 45 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 46 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 48 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 49 H 0.13 1.01 7.94 -52.49 -0.42 0.60 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -35.30 397.74 -9.12 -44.42 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.76 Total: 12.17 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.36 Total: -13.63 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.21 Total: -56.47 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.12 Total: -13.58 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.30 -9.12 -44.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713967256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.364 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds