Wall clock time and date at job start Tue Mar 31 2020 16:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46794 * 2 1 4 4 H 1.08996 * 109.46922 * 54.58927 * 3 2 1 5 5 C 1.50703 * 109.47001 * 174.58330 * 3 2 1 6 6 O 1.21284 * 119.99858 * 123.08516 * 5 3 2 7 7 N 1.34773 * 120.00191 * 303.09052 * 5 3 2 8 8 C 1.46507 * 119.99813 * 175.42226 * 7 5 3 9 9 H 1.08989 * 112.90771 * 336.25172 * 8 7 5 10 10 C 1.53783 * 113.61227 * 107.50525 * 8 7 5 11 11 C 1.53780 * 87.08197 * 139.97940 * 10 8 7 12 12 H 1.09003 * 113.68978 * 220.01112 * 11 10 8 13 13 N 1.46492 * 113.61566 * 89.11321 * 11 10 8 14 14 C 1.36939 * 120.00236 * 107.50214 * 13 11 10 15 15 H 1.07999 * 119.99726 * 0.02562 * 14 13 11 16 16 C 1.38812 * 120.00370 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99682 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99932 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47067 * 269.99941 * 18 16 14 20 20 H 1.48497 * 109.47258 * 29.99710 * 18 16 14 21 21 H 1.48494 * 109.47194 * 150.00237 * 18 16 14 22 22 C 1.53783 * 113.61006 * 204.99694 * 8 7 5 23 23 C 1.50701 * 109.47380 * 294.58596 * 3 2 1 24 24 C 1.38268 * 119.94115 * 299.72654 * 23 3 2 25 25 C 1.38145 * 120.04945 * 179.72384 * 24 23 3 26 26 C 1.38724 * 119.94684 * 0.55135 * 25 24 23 27 27 O 1.35902 * 120.05724 * 179.74933 * 26 25 24 28 28 C 1.42894 * 116.99742 * 359.97392 * 27 26 25 29 29 C 1.38739 * 119.88790 * 359.72326 * 26 25 24 30 30 C 1.38141 * 119.94492 * 0.02562 * 29 26 25 31 31 H 1.08997 * 109.47593 * 295.28166 * 1 2 3 32 32 H 1.09001 * 109.47218 * 55.28161 * 1 2 3 33 33 H 1.08999 * 109.47060 * 175.27936 * 1 2 3 34 34 H 1.08996 * 109.47374 * 240.00558 * 2 1 3 35 35 H 1.08999 * 109.47579 * 120.00198 * 2 1 3 36 36 H 0.96997 * 120.00481 * 355.42056 * 7 5 3 37 37 H 1.08998 * 113.61730 * 25.42735 * 10 8 7 38 38 H 1.09000 * 113.60943 * 254.52929 * 10 8 7 39 39 H 0.97001 * 120.00525 * 287.50542 * 13 11 10 40 40 H 0.96997 * 120.00471 * 0.02562 * 17 16 14 41 41 H 1.09007 * 113.61327 * 105.47718 * 22 8 7 42 42 H 1.08994 * 113.62016 * 334.57319 * 22 8 7 43 43 H 1.07997 * 119.97289 * 0.02562 * 24 23 3 44 44 H 1.08005 * 120.02743 * 180.27398 * 25 24 23 45 45 H 1.08999 * 109.47293 * 60.00216 * 28 27 26 46 46 H 1.09006 * 109.46979 * 180.02562 * 28 27 26 47 47 H 1.08992 * 109.47214 * 299.99821 * 28 27 26 48 48 H 1.07995 * 120.02465 * 179.97438 * 29 26 25 49 49 H 1.07999 * 119.97447 * 180.02562 * 30 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5995 1.9835 0.8375 5 6 3.5409 1.4447 0.1341 6 8 4.2240 1.9910 -0.7061 7 7 4.1243 0.8396 1.1876 8 6 5.5847 0.7541 1.2670 9 1 6.0672 0.8221 0.2921 10 6 6.1996 1.6854 2.3250 11 6 7.1636 0.5359 2.6628 12 1 7.3528 0.4223 3.7302 13 7 8.3924 0.5470 1.8652 14 6 9.5803 0.9088 2.4427 15 1 9.6112 1.1854 3.4862 16 6 10.7445 0.9198 1.6869 17 7 10.7066 0.5831 0.4150 18 14 12.3649 1.4126 2.4748 19 1 12.5567 2.8787 2.3371 20 1 12.3461 1.0490 3.9145 21 1 13.4801 0.7020 1.7993 22 6 6.0873 -0.4206 2.1227 23 6 1.6500 2.1133 -1.2920 24 6 2.0991 1.6044 -2.4966 25 6 1.7384 2.2141 -3.6826 26 6 0.9343 3.3444 -3.6637 27 8 0.5823 3.9489 -4.8288 28 6 1.0765 3.3670 -6.0367 29 6 0.4897 3.8563 -2.4533 30 6 0.8489 3.2400 -1.2703 31 1 -0.3634 0.4389 0.9292 32 1 -0.3634 0.5853 -0.8447 33 1 -0.3633 -1.0242 -0.0846 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.5773 0.4606 1.8933 37 1 5.5165 1.9352 3.1368 38 1 6.6940 2.5601 1.9023 39 1 8.3647 0.2982 0.9281 40 1 9.8652 0.3276 0.0058 41 1 6.4913 -1.2462 1.5367 42 1 5.3736 -0.7466 2.8792 43 1 2.7284 0.7268 -2.5106 44 1 2.0858 1.8137 -4.6237 45 1 0.7178 2.3410 -6.1191 46 1 0.7227 3.9456 -6.8901 47 1 2.1664 3.3708 -6.0224 48 1 -0.1361 4.7363 -2.4359 49 1 0.5027 3.6378 -0.3278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713967256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:19 Heat of formation + Delta-G solvation = -47.478205 kcal Electronic energy + Delta-G solvation = -28165.612450 eV Core-core repulsion = 24285.670390 eV Total energy + Delta-G solvation = -3879.942060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67070 -40.86834 -39.76460 -38.39382 -36.06808 -35.76916 -34.16106 -32.05464 -31.41715 -31.17158 -28.81389 -27.60910 -26.60448 -25.90979 -24.61679 -24.04804 -23.01217 -22.45067 -21.06047 -20.31357 -19.54294 -19.14592 -18.13665 -17.66392 -17.19299 -16.79474 -16.67160 -16.40945 -15.98198 -15.81848 -15.48427 -15.42289 -15.28037 -15.02996 -14.59368 -14.45360 -14.22707 -13.83205 -13.53049 -13.48488 -13.35097 -13.13916 -12.93221 -12.91392 -12.68349 -12.63034 -12.51200 -12.13939 -11.91552 -11.87003 -11.86190 -11.68256 -11.61602 -11.48276 -11.27070 -10.92411 -10.70335 -10.00815 -9.93232 -9.15807 -9.07455 -8.42834 -5.37372 0.37805 0.41456 1.56884 1.62090 1.68162 1.82024 2.19910 2.35597 2.69496 2.82013 3.35526 3.53903 3.55120 3.67997 3.71315 3.79759 3.86872 3.95639 4.04943 4.18841 4.20896 4.25426 4.29952 4.32326 4.38953 4.49843 4.54385 4.61903 4.68189 4.71791 4.74565 4.75843 4.90748 4.91732 5.05130 5.05964 5.13195 5.16192 5.21786 5.25024 5.31059 5.37346 5.45317 5.56439 5.64275 5.66201 5.79380 6.40453 6.44228 6.61797 7.05385 7.31557 7.94845 8.06875 9.08527 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.002366 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.589021 B =11832.197736 C =13123.532620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.053 4.053 4 H 0.134 0.866 5 C 0.508 3.492 6 O -0.584 6.584 7 N -0.700 5.700 8 C 0.135 3.865 9 H 0.065 0.935 10 C -0.171 4.171 11 C 0.153 3.847 12 H 0.075 0.925 13 N -0.735 5.735 14 C -0.332 4.332 15 H 0.073 0.927 16 C -0.109 4.109 17 N -0.977 5.977 18 Si 1.132 2.868 19 H -0.288 1.288 20 H -0.267 1.267 21 H -0.293 1.293 22 C -0.136 4.136 23 C -0.107 4.107 24 C -0.063 4.063 25 C -0.219 4.219 26 C 0.111 3.889 27 O -0.334 6.334 28 C 0.020 3.980 29 C -0.164 4.164 30 C -0.073 4.073 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.418 0.582 37 H 0.107 0.893 38 H 0.028 0.972 39 H 0.357 0.643 40 H 0.242 0.758 41 H 0.060 0.940 42 H 0.129 0.871 43 H 0.109 0.891 44 H 0.135 0.865 45 H 0.064 0.936 46 H 0.122 0.878 47 H 0.053 0.947 48 H 0.144 0.856 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.245 0.004 -1.680 29.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.074 4.074 4 H 0.151 0.849 5 C 0.296 3.704 6 O -0.463 6.463 7 N -0.352 5.352 8 C 0.030 3.970 9 H 0.083 0.917 10 C -0.213 4.213 11 C 0.042 3.958 12 H 0.093 0.907 13 N -0.375 5.375 14 C -0.463 4.463 15 H 0.091 0.909 16 C -0.300 4.300 17 N -0.625 5.625 18 Si 0.956 3.044 19 H -0.215 1.215 20 H -0.192 1.192 21 H -0.220 1.220 22 C -0.175 4.175 23 C -0.108 4.108 24 C -0.082 4.082 25 C -0.237 4.237 26 C 0.066 3.934 27 O -0.248 6.248 28 C -0.075 4.075 29 C -0.182 4.182 30 C -0.091 4.091 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.257 0.743 37 H 0.126 0.874 38 H 0.047 0.953 39 H 0.189 0.811 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.147 0.853 43 H 0.127 0.873 44 H 0.153 0.847 45 H 0.083 0.917 46 H 0.140 0.860 47 H 0.072 0.928 48 H 0.162 0.838 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -27.237 0.796 -2.334 27.348 hybrid contribution -1.120 -0.467 -0.595 1.351 sum -28.356 0.329 -2.929 28.509 Atomic orbital electron populations 1.21730 0.93478 1.02398 1.02657 1.21565 0.97844 0.92020 1.03205 1.20373 0.89545 0.99892 0.97605 0.84871 1.21292 0.91494 0.76928 0.80709 1.90744 1.66669 1.45463 1.43439 1.45845 1.06473 1.58623 1.24213 1.22086 0.80075 0.97508 0.97379 0.91687 1.24172 0.99643 0.98176 0.99323 1.21201 0.84575 0.94774 0.95203 0.90668 1.42416 1.04283 1.81224 1.09586 1.20483 0.88196 1.41110 0.96489 0.90893 1.27312 1.05406 1.01148 0.96101 1.70965 1.27586 1.51111 1.12821 0.82576 0.71298 0.75974 0.74503 1.21480 1.19182 1.21982 1.23737 0.98316 0.95995 0.99487 1.19366 1.00214 0.97477 0.93733 1.20760 0.96277 0.98973 0.92150 1.21339 1.03958 0.98642 0.99800 1.19251 0.95095 0.92250 0.86848 1.86021 1.71237 1.53954 1.13605 1.23292 0.99664 1.00221 0.84298 1.20642 1.04965 1.02952 0.89655 1.21117 0.96024 0.93428 0.98489 0.90803 0.93324 0.91760 0.92750 0.89166 0.74339 0.87423 0.95270 0.81072 0.94790 0.92153 0.85274 0.87278 0.84731 0.91709 0.85985 0.92838 0.83817 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.80 71.98 0.71 -0.79 16 2 C -0.11 -1.44 5.24 30.59 0.16 -1.28 16 3 C -0.05 -0.94 2.38 -12.28 -0.03 -0.97 16 4 H 0.13 1.58 7.87 -2.39 -0.02 1.56 16 5 C 0.51 13.72 7.03 87.66 0.62 14.34 16 6 O -0.58 -22.74 14.84 -3.04 -0.05 -22.78 16 7 N -0.70 -16.17 5.15 -440.03 -2.27 -18.44 16 8 C 0.14 4.33 4.09 45.52 0.19 4.52 16 9 H 0.06 2.72 7.52 -2.39 -0.02 2.70 16 10 C -0.17 -5.94 7.68 31.12 0.24 -5.70 16 11 C 0.15 5.89 4.56 45.52 0.21 6.10 16 12 H 0.08 2.79 8.10 -2.39 -0.02 2.77 16 13 N -0.74 -37.93 5.31 -320.45 -1.70 -39.63 16 14 C -0.33 -18.95 9.97 84.03 0.84 -18.11 16 15 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 16 C -0.11 -6.50 5.50 84.86 0.47 -6.03 16 17 N -0.98 -63.39 13.70 21.65 0.30 -63.09 16 18 Si 1.13 53.04 29.92 68.60 2.05 55.09 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 C -0.14 -3.93 7.58 31.12 0.24 -3.69 16 23 C -0.11 -2.35 3.30 -19.85 -0.07 -2.42 16 24 C -0.06 -1.60 7.90 22.25 0.18 -1.43 16 25 C -0.22 -5.24 9.04 22.36 0.20 -5.04 16 26 C 0.11 2.60 6.69 22.51 0.15 2.75 16 27 O -0.33 -7.27 10.50 -92.45 -0.97 -8.24 16 28 C 0.02 0.28 9.81 113.37 1.11 1.39 16 29 C -0.16 -3.43 9.99 22.37 0.22 -3.21 16 30 C -0.07 -1.40 9.66 22.25 0.22 -1.18 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.63 7.25 -2.39 -0.02 0.61 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.90 7.22 -2.39 -0.02 0.88 16 35 H 0.09 0.85 7.34 -2.39 -0.02 0.83 16 36 H 0.42 5.90 8.04 -92.71 -0.75 5.16 16 37 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.36 19.71 6.73 -92.71 -0.62 19.08 16 40 H 0.24 15.79 6.77 -92.71 -0.63 15.16 16 41 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.13 2.52 8.12 -2.39 -0.02 2.50 16 43 H 0.11 2.90 7.53 -2.91 -0.02 2.88 16 44 H 0.13 2.77 6.30 -2.91 -0.02 2.75 16 45 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 46 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.05 0.79 7.66 -2.39 -0.02 0.78 16 48 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 49 H 0.16 1.97 7.94 -2.91 -0.02 1.95 16 Total: -1.00 -81.58 397.74 2.74 -78.84 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.27 Total: 38.99 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.64 Total: -20.75 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -3.67 Total: -121.16 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.02 Total: -31.02 kcal Atomic # 14 Polarization: 53.04 SS G_CDS: 2.05 Total: 55.09 kcal Total: -81.58 2.74 -78.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713967256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.364 kcal (2) G-P(sol) polarization free energy of solvation -81.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds