Wall clock time and date at job start Tue Mar 31 2020 16:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 H 1.09009 * 109.46695 * 55.00452 * 3 2 1 5 5 O 1.42896 * 109.47394 * 295.00260 * 3 2 1 6 6 C 1.35904 * 117.00087 * 96.55942 * 5 3 2 7 7 C 1.38753 * 120.05488 * 1.99933 * 6 5 3 8 8 C 1.38123 * 119.94320 * 179.69517 * 7 6 5 9 9 C 1.38287 * 120.05307 * 0.59799 * 8 7 6 10 10 C 1.38236 * 120.11470 * 359.67266 * 9 8 7 11 11 C 1.38170 * 120.05323 * 0.03207 * 10 9 8 12 12 C 1.50700 * 120.02511 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47463 * 174.99845 * 3 2 1 14 14 O 1.21286 * 119.99850 * 115.00251 * 13 3 2 15 15 N 1.34775 * 120.00206 * 295.00396 * 13 3 2 16 16 C 1.46499 * 120.00250 * 179.97438 * 15 13 3 17 17 H 1.09004 * 110.64191 * 323.31453 * 16 15 13 18 18 C 1.55156 * 110.87723 * 200.06461 * 16 15 13 19 19 C 1.55130 * 101.48810 * 205.89971 * 18 16 15 20 20 N 1.47420 * 104.72247 * 37.29086 * 19 18 16 21 21 C 1.36943 * 125.64874 * 155.81400 * 20 19 18 22 22 H 1.07999 * 120.00019 * 191.65907 * 21 20 19 23 23 C 1.38816 * 119.99473 * 11.66728 * 21 20 19 24 24 N 1.31621 * 119.99499 * 205.19112 * 23 21 20 25 25 Si 1.86797 * 120.00220 * 25.18810 * 23 21 20 26 26 H 1.48498 * 109.47162 * 269.99978 * 25 23 21 27 27 H 1.48502 * 109.47201 * 30.00381 * 25 23 21 28 28 H 1.48503 * 109.46990 * 150.00029 * 25 23 21 29 29 C 1.47026 * 108.70635 * 335.55665 * 20 19 18 30 30 H 1.09001 * 109.46665 * 299.99996 * 1 2 3 31 31 H 1.08996 * 109.47285 * 59.99573 * 1 2 3 32 32 H 1.08999 * 109.47167 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47281 * 240.00409 * 2 1 3 34 34 H 1.09000 * 109.47563 * 119.99997 * 2 1 3 35 35 H 1.08004 * 120.02870 * 359.96969 * 7 6 5 36 36 H 1.08006 * 119.97369 * 180.29529 * 8 7 6 37 37 H 1.08004 * 119.94303 * 179.70125 * 9 8 7 38 38 H 1.07998 * 119.97793 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.47321 * 269.97198 * 12 11 10 40 40 H 1.09002 * 109.47388 * 29.97353 * 12 11 10 41 41 H 1.09002 * 109.46831 * 149.97250 * 12 11 10 42 42 H 0.96996 * 120.00263 * 359.97438 * 15 13 3 43 43 H 1.08998 * 111.00022 * 324.13846 * 18 16 15 44 44 H 1.08996 * 111.00308 * 87.94716 * 18 16 15 45 45 H 1.08996 * 110.49117 * 278.45036 * 19 18 16 46 46 H 1.08998 * 110.33937 * 156.05833 * 19 18 16 47 47 H 0.96998 * 120.00100 * 354.93233 * 24 23 21 48 48 H 1.08998 * 109.88336 * 120.70266 * 29 20 19 49 49 H 1.09000 * 109.88048 * 241.71321 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 0.5328 2.8372 -1.1979 7 6 -0.1737 2.9951 -0.0142 8 6 -1.3176 3.7689 0.0080 9 6 -1.7657 4.3759 -1.1509 10 6 -1.0667 4.2157 -2.3327 11 6 0.0815 3.4476 -2.3588 12 6 0.8433 3.2737 -3.6474 13 6 3.5419 1.4443 0.1239 14 8 4.2250 1.8611 -0.7875 15 7 4.1260 0.9827 1.2473 16 6 5.5861 0.9839 1.3675 17 1 6.0507 0.7485 0.4100 18 6 6.0515 -0.0115 2.4629 19 6 7.4086 0.6087 2.8875 20 7 7.1872 2.0653 2.8364 21 6 7.8915 3.0048 3.5410 22 1 7.5383 4.0245 3.5839 23 6 9.0596 2.6465 4.1999 24 7 9.4681 3.3417 5.2402 25 14 10.0517 1.1778 3.6101 26 1 9.5796 -0.0485 4.3019 27 1 9.8760 1.0180 2.1442 28 1 11.4885 1.3962 3.9154 29 6 6.0890 2.3427 1.8990 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.1729 2.5169 0.8900 36 1 -1.8653 3.8960 0.9302 37 1 -2.6631 4.9767 -1.1326 38 1 -1.4184 4.6911 -3.2364 39 1 0.4658 2.3995 -4.1777 40 1 0.7132 4.1598 -4.2688 41 1 1.9021 3.1363 -3.4278 42 1 3.5797 0.6497 1.9764 43 1 5.3495 -0.0314 3.2964 44 1 6.1920 -1.0100 2.0492 45 1 8.1949 0.3198 2.1902 46 1 7.6661 0.2994 3.9004 47 1 8.9944 4.1468 5.5018 48 1 5.2814 2.8601 2.4168 49 1 6.4521 2.9549 1.0735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713981396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:42 Heat of formation + Delta-G solvation = -20.559241 kcal Electronic energy + Delta-G solvation = -28842.589970 eV Core-core repulsion = 24963.815204 eV Total energy + Delta-G solvation = -3878.774766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.05155 -39.65591 -38.01064 -37.19544 -34.55262 -33.89018 -32.76492 -32.10801 -30.46881 -29.57523 -28.48012 -27.28642 -26.77363 -23.95805 -23.40092 -22.12370 -21.81835 -21.20543 -20.38937 -19.89899 -18.53967 -17.78000 -17.18977 -16.43000 -16.11331 -15.92089 -15.74644 -15.32239 -14.84337 -14.55921 -14.38490 -14.15967 -13.76661 -13.57152 -13.43229 -13.37229 -13.17202 -12.92637 -12.58930 -12.48358 -12.44238 -12.30644 -12.14286 -11.87033 -11.66705 -11.52353 -11.47420 -11.27052 -11.14585 -11.06939 -10.77606 -10.74636 -10.02706 -9.77339 -9.58884 -9.26437 -9.07271 -9.01079 -8.49001 -8.31736 -7.09368 -6.33065 -3.20394 1.05271 1.18618 2.46748 2.51230 3.39199 3.39502 3.50933 3.53048 3.67141 4.26543 4.35456 4.44651 4.53643 4.58622 4.63005 4.77266 4.82839 4.93113 5.00159 5.03886 5.05484 5.13470 5.25171 5.30795 5.35765 5.40928 5.43890 5.52422 5.52882 5.53766 5.62566 5.66584 5.80676 5.84783 5.91781 6.03520 6.07446 6.11368 6.21502 6.27315 6.28214 6.47809 6.50897 6.55395 6.70926 6.77039 7.12383 7.46442 7.69904 8.16686 8.33810 9.03387 9.57715 10.24226 11.15243 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.002503 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.064458 B =11183.476625 C =11508.349655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.063 3.937 4 H 0.103 0.897 5 O -0.277 6.277 6 C 0.133 3.867 7 C -0.209 4.209 8 C -0.085 4.085 9 C -0.157 4.157 10 C -0.084 4.084 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.512 3.488 14 O -0.514 6.514 15 N -0.713 5.713 16 C 0.133 3.867 17 H 0.096 0.904 18 C -0.134 4.134 19 C 0.106 3.894 20 N -0.607 5.607 21 C -0.327 4.327 22 H 0.075 0.925 23 C -0.021 4.021 24 N -0.921 5.921 25 Si 1.064 2.936 26 H -0.293 1.293 27 H -0.286 1.286 28 H -0.298 1.298 29 C 0.127 3.873 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.399 0.601 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.065 0.935 47 H 0.262 0.738 48 H 0.030 0.970 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.146 -6.650 -12.366 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.175 4.175 3 C 0.003 3.997 4 H 0.120 0.880 5 O -0.189 6.189 6 C 0.087 3.913 7 C -0.228 4.228 8 C -0.103 4.103 9 C -0.175 4.175 10 C -0.102 4.102 11 C -0.116 4.116 12 C -0.165 4.165 13 C 0.296 3.704 14 O -0.388 6.388 15 N -0.366 5.366 16 C 0.028 3.972 17 H 0.114 0.886 18 C -0.173 4.173 19 C -0.020 4.020 20 N -0.335 5.335 21 C -0.454 4.454 22 H 0.093 0.907 23 C -0.221 4.221 24 N -0.562 5.562 25 Si 0.896 3.104 26 H -0.221 1.221 27 H -0.213 1.213 28 H -0.226 1.226 29 C 0.000 4.000 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.233 0.767 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -23.121 -7.208 -12.832 27.408 hybrid contribution -1.700 0.921 0.302 1.957 sum -24.821 -6.286 -12.529 28.506 Atomic orbital electron populations 1.21902 0.94393 1.02493 1.02478 1.21976 0.97386 0.93860 1.04238 1.22411 0.93349 0.95358 0.88577 0.87958 1.86213 1.39327 1.60618 1.32761 1.18877 0.86441 0.92044 0.93893 1.21295 0.98795 1.05252 0.97430 1.20906 0.95418 0.95647 0.98337 1.21031 1.01171 1.02425 0.92915 1.20895 0.93666 0.97317 0.98313 1.19287 0.97454 1.00594 0.94246 1.20643 1.00737 1.01754 0.93357 1.20170 0.89028 0.78265 0.82909 1.90758 1.64609 1.44564 1.38853 1.45917 1.08025 1.64809 1.17820 1.22098 0.78154 0.97144 0.99777 0.88605 1.23060 0.99079 0.97606 0.97591 1.22056 0.94227 0.85549 1.00155 1.44789 1.38935 1.00893 1.48903 1.20050 1.05450 0.92188 1.27746 0.90682 1.25883 0.95710 1.05173 0.95368 1.70909 1.46684 1.17811 1.20752 0.83859 0.76062 0.74876 0.75595 1.22118 1.21285 1.22595 1.21651 0.91740 0.93890 0.92696 0.92261 0.92023 0.91875 0.89986 0.89671 0.85144 0.85850 0.85996 0.85467 0.91465 0.91748 0.90584 0.76659 0.90677 0.90782 0.94764 0.91677 0.92721 0.95184 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.52 37.16 0.32 -0.77 16 2 C -0.14 -1.10 5.61 -26.73 -0.15 -1.25 16 3 C 0.06 0.68 2.55 -27.89 -0.07 0.61 16 4 H 0.10 0.93 5.26 -51.92 -0.27 0.65 16 5 O -0.28 -3.58 8.21 -39.30 -0.32 -3.90 16 6 C 0.13 1.53 5.35 -39.22 -0.21 1.32 16 7 C -0.21 -2.01 7.40 -39.43 -0.29 -2.31 16 8 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 9 C -0.16 -1.30 10.04 -39.56 -0.40 -1.70 16 10 C -0.08 -0.75 9.70 -39.61 -0.38 -1.13 16 11 C -0.12 -1.24 5.89 -104.47 -0.62 -1.85 16 12 C -0.11 -1.07 9.79 36.01 0.35 -0.71 16 13 C 0.51 7.33 7.18 -10.99 -0.08 7.25 16 14 O -0.51 -9.77 16.23 -14.31 -0.23 -10.00 16 15 N -0.71 -9.20 5.03 -52.03 -0.26 -9.46 16 16 C 0.13 2.19 3.23 -66.10 -0.21 1.98 16 17 H 0.10 1.68 7.69 -51.93 -0.40 1.28 16 18 C -0.13 -2.08 6.71 -24.46 -0.16 -2.24 16 19 C 0.11 2.23 4.70 -2.41 -0.01 2.22 16 20 N -0.61 -15.05 3.28 -169.93 -0.56 -15.61 16 21 C -0.33 -9.51 10.44 -15.06 -0.16 -9.66 16 22 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 23 C -0.02 -0.62 5.42 -17.43 -0.09 -0.71 16 24 N -0.92 -28.95 13.70 55.49 0.76 -28.19 16 25 Si 1.06 26.60 24.69 -169.99 -4.20 22.41 16 26 H -0.29 -6.80 6.58 56.52 0.37 -6.43 16 27 H -0.29 -6.84 6.22 56.52 0.35 -6.48 16 28 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 29 C 0.13 2.70 6.99 -3.06 -0.02 2.68 16 30 H 0.06 0.36 6.99 -51.93 -0.36 0.00 16 31 H 0.06 0.52 6.46 -51.93 -0.34 0.19 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.53 7.77 -51.93 -0.40 0.12 16 35 H 0.13 1.05 4.68 -52.48 -0.25 0.81 16 36 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 42 H 0.40 3.79 8.24 -40.82 -0.34 3.46 16 43 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.74 5.64 -51.93 -0.29 0.45 16 46 H 0.07 1.44 6.14 -51.93 -0.32 1.13 16 47 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 48 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 49 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 382.82 15.07 5.77 5.77 Total: -1.00 -35.56 382.82 -9.28 -44.84 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.65 Total: 1.57 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.59 Total: -7.42 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.06 Total: -53.26 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.55 Total: -13.90 kcal Atomic # 14 Polarization: 26.60 SS G_CDS: -4.20 Total: 22.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.56 -9.28 -44.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713981396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.278 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds