Wall clock time and date at job start Tue Mar 31 2020 16:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 H 1.09009 * 109.46695 * 55.00452 * 3 2 1 5 5 O 1.42896 * 109.47394 * 295.00260 * 3 2 1 6 6 C 1.35904 * 117.00087 * 96.55942 * 5 3 2 7 7 C 1.38753 * 120.05488 * 1.99933 * 6 5 3 8 8 C 1.38123 * 119.94320 * 179.69517 * 7 6 5 9 9 C 1.38287 * 120.05307 * 0.59799 * 8 7 6 10 10 C 1.38236 * 120.11470 * 359.67266 * 9 8 7 11 11 C 1.38170 * 120.05323 * 0.03207 * 10 9 8 12 12 C 1.50700 * 120.02511 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47463 * 174.99845 * 3 2 1 14 14 O 1.21286 * 119.99850 * 115.00251 * 13 3 2 15 15 N 1.34775 * 120.00206 * 295.00396 * 13 3 2 16 16 C 1.46499 * 120.00250 * 179.97438 * 15 13 3 17 17 H 1.09004 * 110.64191 * 323.31453 * 16 15 13 18 18 C 1.55156 * 110.87723 * 200.06461 * 16 15 13 19 19 C 1.55130 * 101.48810 * 205.89971 * 18 16 15 20 20 N 1.47420 * 104.72247 * 37.29086 * 19 18 16 21 21 C 1.36943 * 125.64874 * 155.81400 * 20 19 18 22 22 H 1.07999 * 120.00019 * 191.65907 * 21 20 19 23 23 C 1.38816 * 119.99473 * 11.66728 * 21 20 19 24 24 N 1.31621 * 119.99499 * 205.19112 * 23 21 20 25 25 Si 1.86797 * 120.00220 * 25.18810 * 23 21 20 26 26 H 1.48498 * 109.47162 * 269.99978 * 25 23 21 27 27 H 1.48502 * 109.47201 * 30.00381 * 25 23 21 28 28 H 1.48503 * 109.46990 * 150.00029 * 25 23 21 29 29 C 1.47026 * 108.70635 * 335.55665 * 20 19 18 30 30 H 1.09001 * 109.46665 * 299.99996 * 1 2 3 31 31 H 1.08996 * 109.47285 * 59.99573 * 1 2 3 32 32 H 1.08999 * 109.47167 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47281 * 240.00409 * 2 1 3 34 34 H 1.09000 * 109.47563 * 119.99997 * 2 1 3 35 35 H 1.08004 * 120.02870 * 359.96969 * 7 6 5 36 36 H 1.08006 * 119.97369 * 180.29529 * 8 7 6 37 37 H 1.08004 * 119.94303 * 179.70125 * 9 8 7 38 38 H 1.07998 * 119.97793 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.47321 * 269.97198 * 12 11 10 40 40 H 1.09002 * 109.47388 * 29.97353 * 12 11 10 41 41 H 1.09002 * 109.46831 * 149.97250 * 12 11 10 42 42 H 0.96996 * 120.00263 * 359.97438 * 15 13 3 43 43 H 1.08998 * 111.00022 * 324.13846 * 18 16 15 44 44 H 1.08996 * 111.00308 * 87.94716 * 18 16 15 45 45 H 1.08996 * 110.49117 * 278.45036 * 19 18 16 46 46 H 1.08998 * 110.33937 * 156.05833 * 19 18 16 47 47 H 0.96998 * 120.00100 * 354.93233 * 24 23 21 48 48 H 1.08998 * 109.88336 * 120.70266 * 29 20 19 49 49 H 1.09000 * 109.88048 * 241.71321 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 8 1.6620 2.0814 -1.2210 6 6 0.5328 2.8372 -1.1979 7 6 -0.1737 2.9951 -0.0142 8 6 -1.3176 3.7689 0.0080 9 6 -1.7657 4.3759 -1.1509 10 6 -1.0667 4.2157 -2.3327 11 6 0.0815 3.4476 -2.3588 12 6 0.8433 3.2737 -3.6474 13 6 3.5419 1.4443 0.1239 14 8 4.2250 1.8611 -0.7875 15 7 4.1260 0.9827 1.2473 16 6 5.5861 0.9839 1.3675 17 1 6.0507 0.7485 0.4100 18 6 6.0515 -0.0115 2.4629 19 6 7.4086 0.6087 2.8875 20 7 7.1872 2.0653 2.8364 21 6 7.8915 3.0048 3.5410 22 1 7.5383 4.0245 3.5839 23 6 9.0596 2.6465 4.1999 24 7 9.4681 3.3417 5.2402 25 14 10.0517 1.1778 3.6101 26 1 9.5796 -0.0485 4.3019 27 1 9.8760 1.0180 2.1442 28 1 11.4885 1.3962 3.9154 29 6 6.0890 2.3427 1.8990 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.1729 2.5169 0.8900 36 1 -1.8653 3.8960 0.9302 37 1 -2.6631 4.9767 -1.1326 38 1 -1.4184 4.6911 -3.2364 39 1 0.4658 2.3995 -4.1777 40 1 0.7132 4.1598 -4.2688 41 1 1.9021 3.1363 -3.4278 42 1 3.5797 0.6497 1.9764 43 1 5.3495 -0.0314 3.2964 44 1 6.1920 -1.0100 2.0492 45 1 8.1949 0.3198 2.1902 46 1 7.6661 0.2994 3.9004 47 1 8.9944 4.1468 5.5018 48 1 5.2814 2.8601 2.4168 49 1 6.4521 2.9549 1.0735 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713981396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:41 Heat of formation + Delta-G solvation = -44.168838 kcal Electronic energy + Delta-G solvation = -28843.613759 eV Core-core repulsion = 24963.815204 eV Total energy + Delta-G solvation = -3879.798555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.92959 -40.74998 -39.27313 -38.29382 -35.86701 -34.93765 -34.03957 -33.41180 -31.34118 -31.08647 -29.80967 -28.39278 -27.57482 -25.79273 -24.06759 -23.09825 -22.84153 -22.54020 -21.65841 -21.21101 -19.64570 -19.31581 -18.48237 -17.67618 -17.06436 -16.88289 -16.81369 -16.48609 -15.86985 -15.75491 -15.54925 -15.34147 -15.25447 -14.79839 -14.66173 -14.49504 -14.10839 -14.04487 -13.63153 -13.59028 -13.33985 -13.21028 -13.09071 -13.04801 -13.02153 -12.81096 -12.60746 -12.39760 -12.32214 -12.10045 -11.96095 -11.78272 -11.48353 -11.46861 -11.32646 -10.87136 -10.69833 -10.26757 -9.75292 -9.20453 -9.06082 -8.67713 -5.48655 0.37265 0.47964 1.38935 1.39090 1.51380 1.55366 1.71066 2.47524 2.50215 2.80591 3.03111 3.28963 3.50269 3.54339 3.59857 3.70961 3.82857 3.86361 3.95300 4.10073 4.17761 4.22518 4.32367 4.39229 4.41147 4.46555 4.47860 4.64611 4.73472 4.75038 4.75426 4.77070 4.82479 4.89089 4.94443 4.96542 5.00402 5.08356 5.14671 5.29347 5.31832 5.39198 5.40291 5.52221 5.52741 5.60557 5.85360 6.06904 6.31336 6.47962 6.79330 7.09107 7.41691 8.07387 8.80500 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.002503 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.064458 B =11183.476625 C =11508.349655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C 0.067 3.933 4 H 0.123 0.877 5 O -0.304 6.304 6 C 0.108 3.892 7 C -0.214 4.214 8 C -0.089 4.089 9 C -0.158 4.158 10 C -0.088 4.088 11 C -0.140 4.140 12 C -0.104 4.104 13 C 0.510 3.490 14 O -0.568 6.568 15 N -0.695 5.695 16 C 0.148 3.852 17 H 0.088 0.912 18 C -0.112 4.112 19 C 0.091 3.909 20 N -0.627 5.627 21 C -0.325 4.325 22 H 0.035 0.965 23 C -0.075 4.075 24 N -0.952 5.952 25 Si 1.107 2.893 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.306 1.306 29 C 0.125 3.875 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.420 0.580 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.038 0.962 46 H 0.058 0.942 47 H 0.247 0.753 48 H 0.025 0.975 49 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.850 -9.389 -12.254 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C 0.008 3.992 4 H 0.140 0.860 5 O -0.217 6.217 6 C 0.063 3.937 7 C -0.232 4.232 8 C -0.107 4.107 9 C -0.176 4.176 10 C -0.106 4.106 11 C -0.140 4.140 12 C -0.161 4.161 13 C 0.296 3.704 14 O -0.446 6.446 15 N -0.349 5.349 16 C 0.042 3.958 17 H 0.106 0.894 18 C -0.151 4.151 19 C -0.034 4.034 20 N -0.355 5.355 21 C -0.453 4.453 22 H 0.053 0.947 23 C -0.268 4.268 24 N -0.596 5.596 25 Si 0.932 3.068 26 H -0.183 1.183 27 H -0.197 1.197 28 H -0.234 1.234 29 C -0.002 4.002 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.259 0.741 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.043 0.957 49 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -25.906 -9.982 -12.704 30.531 hybrid contribution -0.962 1.946 0.228 2.183 sum -26.868 -8.036 -12.476 30.694 Atomic orbital electron populations 1.21864 0.93349 1.03303 1.02248 1.21996 0.98156 0.91711 1.04893 1.22517 0.90461 0.97388 0.88857 0.86002 1.86177 1.40364 1.61352 1.33826 1.19145 0.86625 0.92870 0.95039 1.21493 0.99035 1.05521 0.97193 1.21275 0.95044 0.94846 0.99511 1.21406 1.01696 1.02025 0.92506 1.21184 0.93008 0.96759 0.99633 1.19565 0.98525 1.01575 0.94365 1.20590 0.98885 1.02800 0.93793 1.20901 0.90560 0.76747 0.82159 1.90739 1.66132 1.46903 1.40830 1.45660 1.06701 1.64225 1.18288 1.21716 0.80070 0.94344 0.99640 0.89402 1.23014 0.95841 0.98528 0.97668 1.22302 0.97814 0.83270 0.99973 1.44853 1.39049 1.02295 1.49301 1.19911 1.05859 0.91768 1.27785 0.94661 1.27233 0.96724 1.07967 0.94916 1.71029 1.47407 1.18288 1.22843 0.83322 0.73985 0.73282 0.76206 1.18258 1.19726 1.23410 1.21732 0.90612 0.96727 0.91115 0.90910 0.93837 0.90496 0.91274 0.86990 0.83787 0.83389 0.83511 0.83467 0.90807 0.90235 0.93475 0.74109 0.88380 0.86426 0.94466 0.92409 0.94340 0.95656 0.97970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.52 71.98 0.61 -1.10 16 2 C -0.13 -1.77 5.61 30.59 0.17 -1.60 16 3 C 0.07 1.37 2.55 29.85 0.08 1.44 16 4 H 0.12 1.94 5.26 -2.38 -0.01 1.92 16 5 O -0.30 -7.95 8.21 -73.48 -0.60 -8.55 16 6 C 0.11 2.45 5.35 22.50 0.12 2.57 16 7 C -0.21 -3.76 7.40 22.37 0.17 -3.59 16 8 C -0.09 -1.29 10.04 22.25 0.22 -1.06 16 9 C -0.16 -2.23 10.04 22.28 0.22 -2.01 16 10 C -0.09 -1.44 9.70 22.25 0.22 -1.22 16 11 C -0.14 -2.98 5.89 -19.77 -0.12 -3.09 16 12 C -0.10 -2.12 9.79 71.24 0.70 -1.42 16 13 C 0.51 14.17 7.18 87.66 0.63 14.80 16 14 O -0.57 -22.14 16.23 15.94 0.26 -21.89 16 15 N -0.69 -16.27 5.03 -436.91 -2.20 -18.46 16 16 C 0.15 4.60 3.23 46.18 0.15 4.75 16 17 H 0.09 2.95 7.69 -2.39 -0.02 2.93 16 18 C -0.11 -2.98 6.71 32.06 0.22 -2.77 16 19 C 0.09 3.60 4.70 86.93 0.41 4.01 16 20 N -0.63 -31.15 3.28 -691.54 -2.27 -33.41 16 21 C -0.32 -19.51 10.44 84.03 0.88 -18.63 16 22 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 23 C -0.07 -4.50 5.42 84.86 0.46 -4.04 16 24 N -0.95 -61.76 13.70 21.65 0.30 -61.46 16 25 Si 1.11 53.25 24.69 68.60 1.69 54.95 16 26 H -0.26 -10.85 6.58 99.48 0.65 -10.19 16 27 H -0.27 -12.26 6.22 99.48 0.62 -11.65 16 28 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 29 C 0.12 5.36 6.99 86.73 0.61 5.96 16 30 H 0.07 0.63 6.99 -2.39 -0.02 0.61 16 31 H 0.04 0.67 6.46 -2.39 -0.02 0.66 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 0.91 7.77 -2.39 -0.02 0.89 16 35 H 0.14 1.95 4.68 -2.91 -0.01 1.94 16 36 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 41 H 0.05 1.21 7.53 -2.39 -0.02 1.19 16 42 H 0.42 6.30 8.24 -92.71 -0.76 5.53 16 43 H 0.10 2.21 8.01 -2.39 -0.02 2.19 16 44 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.04 1.49 5.64 -2.39 -0.01 1.47 16 46 H 0.06 2.39 6.14 -2.39 -0.01 2.38 16 47 H 0.25 16.20 8.73 -92.71 -0.81 15.39 16 48 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 49 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -83.50 382.82 2.94 -80.56 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.02 Total: 15.28 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 5.74 Total: -7.01 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.17 Total: -113.34 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.34 Total: -30.44 kcal Atomic # 14 Polarization: 53.25 SS G_CDS: 1.69 Total: 54.95 kcal Total: -83.50 2.94 -80.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713981396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.392 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds