Wall clock time and date at job start Tue Mar 31 2020 16:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46726 * 2 1 4 4 H 1.09000 * 109.47181 * 304.99633 * 3 2 1 5 5 O 1.42894 * 109.47349 * 64.99352 * 3 2 1 6 6 C 1.35896 * 117.00429 * 265.05016 * 5 3 2 7 7 C 1.38752 * 120.05407 * 357.19176 * 6 5 3 8 8 C 1.38132 * 119.94147 * 179.97438 * 7 6 5 9 9 C 1.38287 * 120.05668 * 359.96678 * 8 7 6 10 10 C 1.38239 * 120.11321 * 0.03029 * 9 8 7 11 11 C 1.38171 * 120.05750 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.03267 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47022 * 184.99854 * 3 2 1 14 14 O 1.21281 * 120.00124 * 244.99253 * 13 3 2 15 15 N 1.34781 * 120.00241 * 64.99877 * 13 3 2 16 16 C 1.46499 * 119.99997 * 179.97438 * 15 13 3 17 17 H 1.08997 * 110.89111 * 325.69854 * 16 15 13 18 18 C 1.55156 * 111.00280 * 201.81529 * 16 15 13 19 19 C 1.54325 * 102.94792 * 277.43269 * 18 16 15 20 20 N 1.47025 * 107.26504 * 337.80471 * 19 18 16 21 21 C 1.36940 * 125.64584 * 178.90919 * 20 19 18 22 22 H 1.07996 * 119.99703 * 186.13477 * 21 20 19 23 23 C 1.38815 * 119.99923 * 6.13477 * 21 20 19 24 24 N 1.31622 * 120.00031 * 353.15549 * 23 21 20 25 25 Si 1.86797 * 119.99893 * 173.15898 * 23 21 20 26 26 H 1.48498 * 109.46962 * 94.98284 * 25 23 21 27 27 H 1.48493 * 109.47194 * 214.98366 * 25 23 21 28 28 H 1.48498 * 109.47227 * 334.98638 * 25 23 21 29 29 C 1.47524 * 108.71795 * 358.94168 * 20 19 18 30 30 H 1.09009 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47796 * 300.00205 * 1 2 3 32 32 H 1.08999 * 109.47471 * 60.00651 * 1 2 3 33 33 H 1.08995 * 109.47316 * 240.00022 * 2 1 3 34 34 H 1.08996 * 109.46858 * 119.98954 * 2 1 3 35 35 H 1.07998 * 120.02697 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.96456 * 180.25110 * 8 7 6 37 37 H 1.07995 * 119.94367 * 180.02562 * 9 8 7 38 38 H 1.07996 * 119.97703 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.47162 * 89.99355 * 12 11 10 40 40 H 1.08992 * 109.47221 * 210.00089 * 12 11 10 41 41 H 1.09005 * 109.46425 * 329.99680 * 12 11 10 42 42 H 0.97003 * 119.99654 * 359.97438 * 15 13 3 43 43 H 1.09005 * 110.72027 * 35.79750 * 18 16 15 44 44 H 1.09000 * 110.72382 * 158.88382 * 18 16 15 45 45 H 1.08990 * 109.88468 * 97.21943 * 19 18 16 46 46 H 1.08996 * 109.88254 * 218.23968 * 19 18 16 47 47 H 0.96995 * 119.99720 * 180.02562 * 24 23 21 48 48 H 1.08995 * 110.37652 * 265.30613 * 29 20 19 49 49 H 1.08998 * 110.40959 * 142.95110 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6617 2.0815 1.2209 6 6 0.5144 2.8097 1.2066 7 6 -0.2015 2.9554 0.0271 8 6 -1.3676 3.6957 0.0153 9 6 -1.8221 4.2906 1.1780 10 6 -1.1107 4.1468 2.3545 11 6 0.0565 3.4075 2.3716 12 6 0.8318 3.2516 3.6543 13 6 3.5418 1.4444 -0.1238 14 8 4.2248 1.8614 0.7875 15 7 4.1260 0.9829 -1.2473 16 6 5.5860 0.9853 -1.3678 17 1 6.0168 1.8462 -0.8566 18 6 6.0212 0.9474 -2.8566 19 6 5.9371 -0.5541 -3.2033 20 7 6.0280 -1.2996 -1.9394 21 6 5.9714 -2.6617 -1.8104 22 1 5.9481 -3.1106 -0.8284 23 6 5.9440 -3.4655 -2.9418 24 7 5.8364 -2.9194 -4.1346 25 14 6.0597 -5.3221 -2.7716 26 1 4.6936 -5.9040 -2.7579 27 1 6.8230 -5.8776 -3.9178 28 1 6.7546 -5.6605 -1.5036 29 6 6.1895 -0.3374 -0.8328 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.1528 2.4905 -0.8811 36 1 -1.9273 3.8060 -0.9017 37 1 -2.7343 4.8686 1.1668 38 1 -1.4674 4.6128 3.2612 39 1 0.4796 2.3682 4.1867 40 1 1.8919 3.1402 3.4269 41 1 0.6847 4.1340 4.2772 42 1 3.5796 0.6492 -1.9761 43 1 5.3333 1.5249 -3.4743 44 1 7.0408 1.3157 -2.9699 45 1 4.9873 -0.7689 -3.6929 46 1 6.7628 -0.8299 -3.8592 47 1 5.8168 -3.4810 -4.9251 48 1 7.2452 -0.2044 -0.5965 49 1 5.6425 -0.6751 0.0475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713981397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:45 Heat of formation + Delta-G solvation = -23.391525 kcal Electronic energy + Delta-G solvation = -29244.189412 eV Core-core repulsion = 25365.291829 eV Total energy + Delta-G solvation = -3878.897583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89593 -39.46988 -37.81302 -36.91361 -34.22032 -33.57341 -32.63325 -31.74469 -30.35826 -29.28486 -28.07332 -27.02030 -26.59596 -24.46690 -23.24014 -22.08235 -21.71193 -20.46630 -20.12797 -19.72420 -18.39827 -17.47734 -16.74349 -16.17021 -15.99783 -15.72112 -15.48936 -14.72474 -14.65777 -14.53644 -14.02332 -13.96287 -13.82433 -13.57629 -13.30307 -13.25424 -12.75355 -12.51632 -12.41138 -12.32718 -12.05098 -11.96321 -11.95185 -11.84278 -11.54203 -11.29490 -11.08693 -11.01863 -10.90083 -10.74884 -10.59156 -10.39906 -10.16389 -10.02840 -9.70691 -9.50099 -8.98131 -8.79800 -8.55701 -8.20337 -6.85329 -5.77230 -3.08500 1.13969 1.27991 2.64913 2.76501 3.36852 3.43679 3.45476 3.55380 3.70620 4.44957 4.47176 4.60457 4.66210 4.67804 4.78227 4.93482 5.04517 5.11692 5.22768 5.24830 5.32310 5.40412 5.43035 5.46429 5.52431 5.56382 5.62918 5.71007 5.71779 5.78918 5.87216 5.95287 6.10729 6.12424 6.14740 6.18653 6.30698 6.32390 6.36512 6.43963 6.45704 6.61537 6.66707 6.97105 7.26581 7.45542 7.54709 7.74592 7.77554 8.20630 8.41420 9.18039 9.78106 10.44268 11.35149 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.002797 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.155817 B =10009.233065 C =10442.950238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.139 4.139 3 C 0.066 3.934 4 H 0.100 0.900 5 O -0.278 6.278 6 C 0.135 3.865 7 C -0.209 4.209 8 C -0.085 4.085 9 C -0.159 4.159 10 C -0.085 4.085 11 C -0.117 4.117 12 C -0.108 4.108 13 C 0.515 3.485 14 O -0.526 6.526 15 N -0.699 5.699 16 C 0.129 3.871 17 H 0.089 0.911 18 C -0.153 4.153 19 C 0.175 3.825 20 N -0.603 5.603 21 C -0.225 4.225 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.402 0.598 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.252 0.748 48 H 0.029 0.971 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 14.056 7.109 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.117 0.883 5 O -0.190 6.190 6 C 0.090 3.910 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.178 4.178 10 C -0.103 4.103 11 C -0.118 4.118 12 C -0.164 4.164 13 C 0.299 3.701 14 O -0.402 6.402 15 N -0.351 5.351 16 C 0.024 3.976 17 H 0.107 0.893 18 C -0.192 4.192 19 C 0.051 3.949 20 N -0.330 5.330 21 C -0.353 4.353 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.002 4.002 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.237 0.763 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.927 14.130 7.794 21.316 hybrid contribution -0.303 -1.285 -0.708 1.498 sum -14.230 12.845 7.085 20.438 Atomic orbital electron populations 1.21908 0.94606 1.02536 1.02028 1.21997 0.97102 0.93683 1.04942 1.22404 0.93597 0.95413 0.87995 0.88295 1.86212 1.37510 1.61790 1.33447 1.18898 0.86257 0.92067 0.93805 1.21329 0.98434 1.05369 0.97635 1.20896 0.95292 0.95895 0.98272 1.21006 1.01046 1.02735 0.92974 1.20873 0.93546 0.97575 0.98271 1.19286 0.97238 1.01032 0.94198 1.20634 1.00658 1.01701 0.93449 1.20058 0.88868 0.78265 0.82928 1.90708 1.64709 1.46315 1.38485 1.45736 1.08093 1.63405 1.17833 1.22174 0.78776 0.99070 0.97567 0.89260 1.23223 1.00950 1.01008 0.93989 1.21173 1.01063 0.84181 0.88524 1.44488 1.86038 1.01560 1.00926 1.19042 1.43476 0.79996 0.92826 0.90572 1.24789 1.02255 0.98013 0.95276 1.69956 1.56639 1.33376 0.96949 0.86149 0.77549 0.85349 0.77050 1.21747 1.21653 1.20659 1.21956 0.97116 0.88805 0.92314 0.91833 0.92286 0.92413 0.89072 0.89967 0.85054 0.85927 0.86109 0.85577 0.91442 0.90593 0.91871 0.76299 0.91595 0.90793 0.93993 0.93428 0.93804 0.95312 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.48 37.16 0.32 -1.28 16 2 C -0.14 -1.71 5.61 -26.73 -0.15 -1.86 16 3 C 0.07 0.86 2.57 -27.88 -0.07 0.79 16 4 H 0.10 1.07 5.31 -51.93 -0.28 0.79 16 5 O -0.28 -4.00 8.24 -39.27 -0.32 -4.33 16 6 C 0.14 1.69 5.30 -39.21 -0.21 1.48 16 7 C -0.21 -2.21 7.26 -39.43 -0.29 -2.50 16 8 C -0.09 -0.78 10.04 -39.60 -0.40 -1.18 16 9 C -0.16 -1.41 10.04 -39.56 -0.40 -1.80 16 10 C -0.08 -0.80 9.70 -39.61 -0.38 -1.19 16 11 C -0.12 -1.34 5.89 -104.47 -0.62 -1.96 16 12 C -0.11 -1.14 9.79 36.00 0.35 -0.79 16 13 C 0.51 8.39 7.18 -10.99 -0.08 8.31 16 14 O -0.53 -10.53 16.20 -14.30 -0.23 -10.76 16 15 N -0.70 -11.01 5.10 -51.73 -0.26 -11.27 16 16 C 0.13 2.25 3.37 -65.78 -0.22 2.03 16 17 H 0.09 1.53 7.63 -51.93 -0.40 1.13 16 18 C -0.15 -2.61 6.53 -24.90 -0.16 -2.77 16 19 C 0.18 3.95 5.37 -3.06 -0.02 3.93 16 20 N -0.60 -14.75 3.40 -169.99 -0.58 -15.33 16 21 C -0.23 -6.13 10.26 -15.06 -0.15 -6.28 16 22 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 23 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 24 N -0.92 -26.07 10.36 55.49 0.58 -25.50 16 25 Si 0.91 21.76 29.56 -169.99 -5.02 16.74 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 C 0.13 2.63 6.94 -2.47 -0.02 2.61 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.65 6.35 -51.93 -0.33 0.32 16 32 H 0.06 0.52 6.91 -51.93 -0.36 0.16 16 33 H 0.09 1.13 7.77 -51.93 -0.40 0.72 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.13 1.22 4.64 -52.49 -0.24 0.98 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.95 7.53 -51.93 -0.39 0.56 16 41 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.40 5.78 8.35 -40.82 -0.34 5.44 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.04 1.02 7.55 -51.93 -0.39 0.63 16 46 H 0.05 1.21 7.37 -51.93 -0.38 0.83 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -32.05 388.81 -10.28 -42.34 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.71 Total: 4.98 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.59 Total: -2.73 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.27 Total: -52.10 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.56 Total: -15.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.05 -10.28 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713981397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.944 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds