Wall clock time and date at job start Tue Mar 31 2020 16:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46726 * 2 1 4 4 H 1.09000 * 109.47181 * 304.99633 * 3 2 1 5 5 O 1.42894 * 109.47349 * 64.99352 * 3 2 1 6 6 C 1.35896 * 117.00429 * 265.05016 * 5 3 2 7 7 C 1.38752 * 120.05407 * 357.19176 * 6 5 3 8 8 C 1.38132 * 119.94147 * 179.97438 * 7 6 5 9 9 C 1.38287 * 120.05668 * 359.96678 * 8 7 6 10 10 C 1.38239 * 120.11321 * 0.03029 * 9 8 7 11 11 C 1.38171 * 120.05750 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.03267 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47022 * 184.99854 * 3 2 1 14 14 O 1.21281 * 120.00124 * 244.99253 * 13 3 2 15 15 N 1.34781 * 120.00241 * 64.99877 * 13 3 2 16 16 C 1.46499 * 119.99997 * 179.97438 * 15 13 3 17 17 H 1.08997 * 110.89111 * 325.69854 * 16 15 13 18 18 C 1.55156 * 111.00280 * 201.81529 * 16 15 13 19 19 C 1.54325 * 102.94792 * 277.43269 * 18 16 15 20 20 N 1.47025 * 107.26504 * 337.80471 * 19 18 16 21 21 C 1.36940 * 125.64584 * 178.90919 * 20 19 18 22 22 H 1.07996 * 119.99703 * 186.13477 * 21 20 19 23 23 C 1.38815 * 119.99923 * 6.13477 * 21 20 19 24 24 N 1.31622 * 120.00031 * 353.15549 * 23 21 20 25 25 Si 1.86797 * 119.99893 * 173.15898 * 23 21 20 26 26 H 1.48498 * 109.46962 * 94.98284 * 25 23 21 27 27 H 1.48493 * 109.47194 * 214.98366 * 25 23 21 28 28 H 1.48498 * 109.47227 * 334.98638 * 25 23 21 29 29 C 1.47524 * 108.71795 * 358.94168 * 20 19 18 30 30 H 1.09009 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47796 * 300.00205 * 1 2 3 32 32 H 1.08999 * 109.47471 * 60.00651 * 1 2 3 33 33 H 1.08995 * 109.47316 * 240.00022 * 2 1 3 34 34 H 1.08996 * 109.46858 * 119.98954 * 2 1 3 35 35 H 1.07998 * 120.02697 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.96456 * 180.25110 * 8 7 6 37 37 H 1.07995 * 119.94367 * 180.02562 * 9 8 7 38 38 H 1.07996 * 119.97703 * 179.97438 * 10 9 8 39 39 H 1.08994 * 109.47162 * 89.99355 * 12 11 10 40 40 H 1.08992 * 109.47221 * 210.00089 * 12 11 10 41 41 H 1.09005 * 109.46425 * 329.99680 * 12 11 10 42 42 H 0.97003 * 119.99654 * 359.97438 * 15 13 3 43 43 H 1.09005 * 110.72027 * 35.79750 * 18 16 15 44 44 H 1.09000 * 110.72382 * 158.88382 * 18 16 15 45 45 H 1.08990 * 109.88468 * 97.21943 * 19 18 16 46 46 H 1.08996 * 109.88254 * 218.23968 * 19 18 16 47 47 H 0.96995 * 119.99720 * 180.02562 * 24 23 21 48 48 H 1.08995 * 110.37652 * 265.30613 * 29 20 19 49 49 H 1.08998 * 110.40959 * 142.95110 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6617 2.0815 1.2209 6 6 0.5144 2.8097 1.2066 7 6 -0.2015 2.9554 0.0271 8 6 -1.3676 3.6957 0.0153 9 6 -1.8221 4.2906 1.1780 10 6 -1.1107 4.1468 2.3545 11 6 0.0565 3.4075 2.3716 12 6 0.8318 3.2516 3.6543 13 6 3.5418 1.4444 -0.1238 14 8 4.2248 1.8614 0.7875 15 7 4.1260 0.9829 -1.2473 16 6 5.5860 0.9853 -1.3678 17 1 6.0168 1.8462 -0.8566 18 6 6.0212 0.9474 -2.8566 19 6 5.9371 -0.5541 -3.2033 20 7 6.0280 -1.2996 -1.9394 21 6 5.9714 -2.6617 -1.8104 22 1 5.9481 -3.1106 -0.8284 23 6 5.9440 -3.4655 -2.9418 24 7 5.8364 -2.9194 -4.1346 25 14 6.0597 -5.3221 -2.7716 26 1 4.6936 -5.9040 -2.7579 27 1 6.8230 -5.8776 -3.9178 28 1 6.7546 -5.6605 -1.5036 29 6 6.1895 -0.3374 -0.8328 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.1528 2.4905 -0.8811 36 1 -1.9273 3.8060 -0.9017 37 1 -2.7343 4.8686 1.1668 38 1 -1.4674 4.6128 3.2612 39 1 0.4796 2.3682 4.1867 40 1 1.8919 3.1402 3.4269 41 1 0.6847 4.1340 4.2772 42 1 3.5796 0.6492 -1.9761 43 1 5.3333 1.5249 -3.4743 44 1 7.0408 1.3157 -2.9699 45 1 4.9873 -0.7689 -3.6929 46 1 6.7628 -0.8299 -3.8592 47 1 5.8168 -3.4810 -4.9251 48 1 7.2452 -0.2044 -0.5965 49 1 5.6425 -0.6751 0.0475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713981397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:44 Heat of formation + Delta-G solvation = -41.382262 kcal Electronic energy + Delta-G solvation = -29244.969549 eV Core-core repulsion = 25365.291829 eV Total energy + Delta-G solvation = -3879.677720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89654 -40.68270 -39.06477 -38.19363 -35.57859 -34.88084 -33.64524 -33.27854 -31.20367 -30.98400 -29.42397 -28.26849 -27.53503 -26.36483 -24.08522 -23.24227 -22.50116 -22.02190 -21.60770 -21.08539 -19.29824 -19.02225 -18.33770 -17.47585 -16.93814 -16.73243 -16.60832 -16.38888 -15.90451 -15.72077 -15.50391 -15.27761 -14.80848 -14.79986 -14.52108 -14.01532 -14.00916 -13.85134 -13.63578 -13.58089 -13.30174 -13.17310 -13.02637 -12.93521 -12.81088 -12.78693 -12.31837 -12.30955 -12.15978 -12.11049 -12.02266 -11.93481 -11.79434 -11.61837 -11.45091 -10.81204 -10.69918 -10.15107 -9.71545 -9.02903 -8.85528 -7.86804 -5.19208 0.40822 0.51390 1.42461 1.45153 1.46890 1.55707 1.62027 2.48695 2.56427 2.84687 3.32221 3.46166 3.57703 3.64945 3.70651 3.80532 3.89388 3.97956 4.06267 4.14248 4.24616 4.29548 4.35734 4.44548 4.48260 4.64361 4.66999 4.71157 4.72782 4.77996 4.79712 4.87888 4.95760 4.98364 5.00052 5.02973 5.03516 5.25655 5.32727 5.44188 5.44813 5.50161 5.56115 5.63757 5.68151 5.76954 5.89200 6.19928 6.36357 6.52113 7.11661 7.12558 7.76830 8.41559 9.23549 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017885 B = 0.002797 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.155817 B =10009.233065 C =10442.950238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.074 3.926 4 H 0.127 0.873 5 O -0.302 6.302 6 C 0.106 3.894 7 C -0.214 4.214 8 C -0.088 4.088 9 C -0.157 4.157 10 C -0.087 4.087 11 C -0.138 4.138 12 C -0.104 4.104 13 C 0.513 3.487 14 O -0.568 6.568 15 N -0.692 5.692 16 C 0.141 3.859 17 H 0.101 0.899 18 C -0.132 4.132 19 C 0.183 3.817 20 N -0.619 5.619 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.056 4.056 24 N -0.942 5.942 25 Si 0.970 3.030 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.122 3.878 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.411 0.589 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.020 0.980 46 H 0.012 0.988 47 H 0.248 0.752 48 H 0.031 0.969 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 15.447 6.687 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.014 3.986 4 H 0.144 0.856 5 O -0.215 6.215 6 C 0.062 3.938 7 C -0.232 4.232 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.105 4.105 11 C -0.139 4.139 12 C -0.161 4.161 13 C 0.299 3.701 14 O -0.446 6.446 15 N -0.344 5.344 16 C 0.036 3.964 17 H 0.118 0.882 18 C -0.170 4.170 19 C 0.058 3.942 20 N -0.345 5.345 21 C -0.370 4.370 22 H 0.089 0.911 23 C -0.249 4.249 24 N -0.591 5.591 25 Si 0.799 3.201 26 H -0.212 1.212 27 H -0.219 1.219 28 H -0.201 1.201 29 C -0.004 4.004 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.247 0.753 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.039 0.961 46 H 0.031 0.969 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.095 15.533 7.374 23.552 hybrid contribution 0.329 -1.679 -0.516 1.787 sum -15.766 13.854 6.858 22.080 Atomic orbital electron populations 1.21850 0.92743 1.03050 1.02593 1.21947 0.98646 0.92945 1.03706 1.22347 0.91111 0.96147 0.88974 0.85561 1.86179 1.38889 1.62580 1.33897 1.19193 0.86332 0.93154 0.95156 1.21486 0.98836 1.05683 0.97205 1.21265 0.94760 0.94949 0.99564 1.21403 1.01599 1.02038 0.92441 1.21181 0.92711 0.96872 0.99691 1.19556 0.98322 1.01898 0.94132 1.20591 0.98860 1.02749 0.93902 1.20666 0.90288 0.77010 0.82101 1.90683 1.65978 1.48152 1.39805 1.45681 1.07541 1.63055 1.18128 1.21985 0.79695 0.97179 0.97589 0.88160 1.23080 1.02971 0.97193 0.93796 1.20974 0.98424 0.87527 0.87241 1.44698 1.85847 1.01403 1.02600 1.19290 1.43242 0.81730 0.92723 0.91143 1.25496 1.02471 1.01867 0.95095 1.70135 1.57345 1.34365 0.97235 0.85198 0.77457 0.80648 0.76842 1.21247 1.21892 1.20138 1.22055 0.97290 0.90024 0.91033 0.91333 0.93008 0.90468 0.89198 0.92263 0.84092 0.83345 0.83374 0.83340 0.91286 0.93383 0.89881 0.75299 0.88416 0.89087 0.96140 0.96935 0.94278 0.95146 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.48 71.98 0.61 -2.22 16 2 C -0.13 -3.28 5.61 30.60 0.17 -3.11 16 3 C 0.07 1.91 2.57 29.85 0.08 1.98 16 4 H 0.13 2.51 5.31 -2.39 -0.01 2.50 16 5 O -0.30 -8.86 8.24 -73.39 -0.60 -9.46 16 6 C 0.11 2.59 5.30 22.51 0.12 2.71 16 7 C -0.21 -4.08 7.26 22.37 0.16 -3.92 16 8 C -0.09 -1.32 10.04 22.26 0.22 -1.10 16 9 C -0.16 -2.25 10.04 22.28 0.22 -2.02 16 10 C -0.09 -1.44 9.70 22.25 0.22 -1.23 16 11 C -0.14 -3.07 5.89 -19.77 -0.12 -3.19 16 12 C -0.10 -2.23 9.79 71.23 0.70 -1.53 16 13 C 0.51 16.74 7.18 87.65 0.63 17.37 16 14 O -0.57 -23.17 16.20 15.96 0.26 -22.91 16 15 N -0.69 -21.32 5.10 -435.96 -2.23 -23.55 16 16 C 0.14 4.79 3.37 46.38 0.16 4.95 16 17 H 0.10 3.29 7.63 -2.39 -0.02 3.27 16 18 C -0.13 -4.27 6.53 31.78 0.21 -4.06 16 19 C 0.18 8.30 5.37 86.73 0.47 8.76 16 20 N -0.62 -30.76 3.40 -691.74 -2.35 -33.11 16 21 C -0.24 -13.35 10.26 84.03 0.86 -12.49 16 22 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 23 C -0.06 -3.08 5.48 84.86 0.47 -2.62 16 24 N -0.94 -54.17 10.36 21.65 0.22 -53.95 16 25 Si 0.97 45.19 29.56 68.60 2.03 47.21 16 26 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 29 C 0.12 5.20 6.94 86.84 0.60 5.80 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.10 6.35 -2.39 -0.02 1.08 16 32 H 0.08 1.19 6.91 -2.39 -0.02 1.18 16 33 H 0.09 2.19 7.77 -2.39 -0.02 2.17 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.14 2.26 4.64 -2.91 -0.01 2.25 16 36 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 37 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.27 7.53 -2.39 -0.02 1.26 16 41 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 42 H 0.41 11.34 8.35 -92.71 -0.77 10.57 16 43 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 44 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.02 1.00 7.55 -2.39 -0.02 0.99 16 46 H 0.01 0.65 7.37 -2.39 -0.02 0.63 16 47 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 48 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -71.52 388.81 3.28 -68.24 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.18 Total: 23.43 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.77 Total: 4.09 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -4.35 Total: -110.61 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.35 Total: -32.37 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.52 3.28 -68.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713981397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.858 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds