Wall clock time and date at job start Tue Mar 31 2020 16:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47134 * 2 1 4 4 N 1.46504 * 109.47213 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99729 * 270.00127 * 4 3 2 6 6 H 1.07996 * 120.00381 * 38.12928 * 5 4 3 7 7 C 1.38819 * 119.99790 * 218.12677 * 5 4 3 8 8 N 1.31623 * 119.99836 * 21.28736 * 7 5 4 9 9 Si 1.86797 * 119.99924 * 201.28523 * 7 5 4 10 10 H 1.48497 * 109.47321 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46848 * 120.00250 * 9 7 5 12 12 H 1.48500 * 109.46887 * 240.00106 * 9 7 5 13 13 C 1.46507 * 120.00160 * 89.99304 * 4 3 2 14 14 C 1.52991 * 109.47316 * 264.50603 * 13 4 3 15 15 N 1.46495 * 109.47109 * 180.02562 * 14 13 4 16 16 C 1.34782 * 120.00246 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99535 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00147 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.69692 * 60.55798 * 18 16 15 20 20 C 1.53405 * 109.69903 * 300.00145 * 18 16 15 21 21 O 1.42818 * 108.38859 * 175.58962 * 20 18 16 22 22 C 1.35848 * 117.86688 * 49.20987 * 21 20 18 23 23 C 1.39144 * 118.50238 * 162.86398 * 22 21 20 24 24 C 1.37971 * 120.21338 * 179.52149 * 23 22 21 25 25 C 1.38293 * 119.95648 * 0.03455 * 24 23 22 26 26 C 1.38110 * 119.98452 * 0.08131 * 25 24 23 27 27 C 1.38369 * 121.79631 * 342.58699 * 22 21 20 28 28 C 1.50762 * 121.40364 * 0.82589 * 27 22 21 29 29 H 1.08994 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46959 * 300.00199 * 1 2 3 31 31 H 1.09003 * 109.47362 * 60.00026 * 1 2 3 32 32 H 1.09003 * 109.47474 * 239.99825 * 2 1 3 33 33 H 1.09001 * 109.47325 * 119.99429 * 2 1 3 34 34 H 1.08995 * 109.47670 * 59.99755 * 3 2 1 35 35 H 1.08997 * 109.46855 * 299.99499 * 3 2 1 36 36 H 0.96994 * 119.99842 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46906 * 144.50305 * 13 4 3 38 38 H 1.09002 * 109.46608 * 24.50398 * 13 4 3 39 39 H 1.09001 * 109.47377 * 59.99990 * 14 13 4 40 40 H 1.09009 * 109.47020 * 299.99822 * 14 13 4 41 41 H 0.97003 * 120.00392 * 359.97438 * 15 14 13 42 42 H 1.08999 * 109.67848 * 55.85974 * 20 18 16 43 43 H 1.09003 * 109.67573 * 295.31265 * 20 18 16 44 44 H 1.08001 * 119.89253 * 359.52803 * 23 22 21 45 45 H 1.07996 * 120.02311 * 180.02562 * 24 23 22 46 46 H 1.08003 * 120.00419 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.84021 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.43979 * 101.99114 * 28 27 22 49 49 H 1.08995 * 109.44055 * 221.86614 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3562 2.1846 1.3129 8 7 5.5892 3.1900 0.4961 9 14 6.5945 1.7565 2.6443 10 1 6.1009 0.5931 3.4239 11 1 7.8969 1.4152 2.0177 12 1 6.7706 2.9207 3.5493 13 6 4.2370 1.4426 -1.2697 14 6 4.6115 0.0068 -1.6425 15 7 5.3440 0.0070 -2.9112 16 6 5.7772 -1.1548 -3.4394 17 8 5.5610 -2.2004 -2.8641 18 6 6.5302 -1.1547 -4.7448 19 1 7.4427 -0.5673 -4.6425 20 6 5.6505 -0.5551 -5.8492 21 8 6.4242 -0.4731 -7.0468 22 6 7.1091 -1.5794 -7.4372 23 6 7.5634 -1.6501 -8.7505 24 6 8.2713 -2.7529 -9.1819 25 6 8.5303 -3.7926 -8.3076 26 6 8.0788 -3.7269 -7.0040 27 6 7.3667 -2.6228 -6.5657 28 6 6.8821 -2.5919 -5.1384 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.4042 3.7084 0.5852 37 1 5.1433 2.0393 -1.1663 38 1 3.6085 1.8689 -2.0516 39 1 3.7052 -0.5899 -1.7459 40 1 5.2400 -0.4195 -0.8605 41 1 5.5166 0.8432 -3.3715 42 1 5.3214 0.4417 -5.5557 43 1 4.7833 -1.1944 -6.0153 44 1 7.3614 -0.8389 -9.4343 45 1 8.6229 -2.8044 -10.2018 46 1 9.0847 -4.6561 -8.6444 47 1 8.2820 -4.5404 -6.3233 48 1 5.9979 -3.2219 -5.0417 49 1 7.6667 -2.9660 -4.4807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714653980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:58 Heat of formation + Delta-G solvation = -46.093345 kcal Electronic energy + Delta-G solvation = -28361.877496 eV Core-core repulsion = 24481.995488 eV Total energy + Delta-G solvation = -3879.882007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08948 -39.30893 -37.63033 -36.55266 -34.43020 -34.23604 -32.92702 -31.25869 -30.66322 -30.43775 -28.16087 -25.90900 -25.60518 -24.73185 -23.26141 -22.73463 -21.21639 -20.80764 -20.21727 -19.59670 -18.05892 -17.54492 -16.70703 -16.49210 -15.79790 -15.47123 -15.32891 -14.98364 -14.85717 -14.46433 -14.31232 -14.03226 -13.83831 -13.77637 -13.47317 -13.30550 -13.15953 -12.89132 -12.81048 -12.51044 -11.97866 -11.68840 -11.62996 -11.54683 -11.33964 -11.20763 -11.05413 -10.98730 -10.78152 -10.77832 -10.46942 -10.39033 -10.11231 -9.93212 -9.81492 -9.55709 -9.00449 -8.63541 -8.52953 -8.37569 -6.66218 -5.86280 -3.47775 1.09044 1.20255 2.75129 3.02289 3.30447 3.39775 3.41121 3.44644 3.55539 4.31169 4.41244 4.43902 4.56673 4.63678 4.81637 4.87034 5.03201 5.11821 5.22037 5.23736 5.28352 5.34934 5.43340 5.50400 5.62502 5.71876 5.74651 5.76293 5.91087 5.97757 6.05988 6.07067 6.16346 6.24962 6.25580 6.30856 6.37311 6.49071 6.54103 6.57807 6.62232 6.78392 6.93089 6.96788 7.12803 7.20641 7.49551 7.77065 7.80322 8.42323 8.45824 9.10200 9.71879 10.29736 11.12032 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.002592 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.091403 B =10799.944534 C =11715.330155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.718 5.718 16 C 0.516 3.484 17 O -0.540 6.540 18 C -0.148 4.148 19 H 0.111 0.889 20 C 0.074 3.926 21 O -0.311 6.311 22 C 0.128 3.872 23 C -0.148 4.148 24 C -0.092 4.092 25 C -0.153 4.153 26 C -0.084 4.084 27 C -0.153 4.153 28 C -0.059 4.059 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.397 0.603 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.090 0.910 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -8.615 -17.675 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.007 3.993 14 C -0.027 4.027 15 N -0.368 5.368 16 C 0.300 3.700 17 O -0.418 6.418 18 C -0.170 4.170 19 H 0.129 0.871 20 C -0.002 4.002 21 O -0.224 6.224 22 C 0.083 3.917 23 C -0.167 4.167 24 C -0.110 4.110 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.154 4.154 28 C -0.097 4.097 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.231 0.769 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.109 0.891 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.915 -9.012 -17.290 19.591 hybrid contribution 0.858 0.013 0.672 1.090 sum 2.773 -8.999 -16.617 19.100 Atomic orbital electron populations 1.21720 0.97296 1.00412 1.01043 1.22201 0.93871 1.00976 1.01485 1.20953 0.85014 0.92863 0.99028 1.43611 0.99430 1.85077 1.01814 1.19050 1.06035 1.22634 0.91318 0.92058 1.25197 1.00847 0.94637 0.97965 1.69977 1.25925 1.17121 1.39791 0.86349 0.81496 0.78120 0.81581 1.19956 1.21402 1.21547 1.21080 0.99609 0.91707 0.86875 1.22458 0.94928 1.02512 0.82808 1.46187 1.56959 1.08340 1.25319 1.20088 0.79523 0.84344 0.86048 1.90699 1.57077 1.31509 1.62470 1.22043 1.00973 0.99871 0.94140 0.87092 1.22950 0.92224 1.03251 0.81772 1.86024 1.60442 1.33518 1.42436 1.18752 0.93672 0.86537 0.92772 1.20600 1.02785 1.00049 0.93232 1.20921 0.97408 0.93024 0.99646 1.21027 1.02640 0.99530 0.93889 1.20929 0.96359 0.96833 0.96074 1.19920 1.03536 0.95969 0.96010 1.20308 1.02858 0.95032 0.91454 0.93813 0.93174 0.93443 0.93041 0.92384 0.93243 0.94973 0.93555 0.88465 0.95183 0.92870 0.91592 0.76920 0.86716 0.90987 0.85234 0.85514 0.85912 0.85669 0.89139 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.15 0.37 -1.75 16 2 C -0.15 -2.59 6.26 -26.73 -0.17 -2.75 16 3 C 0.15 2.99 5.71 -4.04 -0.02 2.97 16 4 N -0.58 -13.65 2.43 -173.23 -0.42 -14.07 16 5 C -0.26 -6.85 9.42 -15.06 -0.14 -6.99 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.37 5.00 -17.43 -0.09 0.29 16 8 N -0.89 -24.28 11.44 55.49 0.63 -23.65 16 9 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.13 2.88 5.50 -4.04 -0.02 2.85 16 14 C 0.10 1.91 5.97 -4.05 -0.02 1.89 16 15 N -0.72 -11.23 5.43 -60.30 -0.33 -11.56 16 16 C 0.52 8.04 7.16 -10.98 -0.08 7.97 16 17 O -0.54 -10.50 15.81 5.56 0.09 -10.42 16 18 C -0.15 -1.79 2.76 -91.51 -0.25 -2.04 16 19 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.07 0.78 6.25 37.37 0.23 1.01 16 21 O -0.31 -3.66 10.27 -19.26 -0.20 -3.85 16 22 C 0.13 1.49 6.47 -39.20 -0.25 1.24 16 23 C -0.15 -1.49 9.94 -39.34 -0.39 -1.88 16 24 C -0.09 -0.79 10.04 -39.66 -0.40 -1.19 16 25 C -0.15 -1.33 10.04 -39.61 -0.40 -1.73 16 26 C -0.08 -0.83 9.67 -39.53 -0.38 -1.21 16 27 C -0.15 -1.75 5.75 -104.44 -0.60 -2.35 16 28 C -0.06 -0.71 4.66 -27.80 -0.13 -0.84 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.93 6.65 -51.93 -0.35 0.59 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 35 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.10 2.35 5.53 -51.93 -0.29 2.07 16 38 H 0.03 0.59 7.83 -51.93 -0.41 0.18 16 39 H 0.05 1.06 6.65 -51.93 -0.35 0.72 16 40 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 41 H 0.40 5.17 7.87 -40.82 -0.32 4.85 16 42 H 0.11 1.01 7.49 -51.93 -0.39 0.62 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.09 1.15 7.72 -51.93 -0.40 0.75 16 49 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -30.50 396.04 -9.98 -40.48 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.95 Total: 5.46 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.75 Total: -4.52 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.11 Total: -49.28 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.11 Total: -14.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.50 -9.98 -40.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714653980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.609 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds