Wall clock time and date at job start Tue Mar 31 2020 16:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47134 * 2 1 4 4 N 1.46504 * 109.47213 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99729 * 270.00127 * 4 3 2 6 6 H 1.07996 * 120.00381 * 38.12928 * 5 4 3 7 7 C 1.38819 * 119.99790 * 218.12677 * 5 4 3 8 8 N 1.31623 * 119.99836 * 21.28736 * 7 5 4 9 9 Si 1.86797 * 119.99924 * 201.28523 * 7 5 4 10 10 H 1.48497 * 109.47321 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46848 * 120.00250 * 9 7 5 12 12 H 1.48500 * 109.46887 * 240.00106 * 9 7 5 13 13 C 1.46507 * 120.00160 * 89.99304 * 4 3 2 14 14 C 1.52991 * 109.47316 * 264.50603 * 13 4 3 15 15 N 1.46495 * 109.47109 * 180.02562 * 14 13 4 16 16 C 1.34782 * 120.00246 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99535 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00147 * 179.97438 * 16 15 14 19 19 H 1.09004 * 109.69692 * 60.55798 * 18 16 15 20 20 C 1.53405 * 109.69903 * 300.00145 * 18 16 15 21 21 O 1.42818 * 108.38859 * 175.58962 * 20 18 16 22 22 C 1.35848 * 117.86688 * 49.20987 * 21 20 18 23 23 C 1.39144 * 118.50238 * 162.86398 * 22 21 20 24 24 C 1.37971 * 120.21338 * 179.52149 * 23 22 21 25 25 C 1.38293 * 119.95648 * 0.03455 * 24 23 22 26 26 C 1.38110 * 119.98452 * 0.08131 * 25 24 23 27 27 C 1.38369 * 121.79631 * 342.58699 * 22 21 20 28 28 C 1.50762 * 121.40364 * 0.82589 * 27 22 21 29 29 H 1.08994 * 109.47540 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46959 * 300.00199 * 1 2 3 31 31 H 1.09003 * 109.47362 * 60.00026 * 1 2 3 32 32 H 1.09003 * 109.47474 * 239.99825 * 2 1 3 33 33 H 1.09001 * 109.47325 * 119.99429 * 2 1 3 34 34 H 1.08995 * 109.47670 * 59.99755 * 3 2 1 35 35 H 1.08997 * 109.46855 * 299.99499 * 3 2 1 36 36 H 0.96994 * 119.99842 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46906 * 144.50305 * 13 4 3 38 38 H 1.09002 * 109.46608 * 24.50398 * 13 4 3 39 39 H 1.09001 * 109.47377 * 59.99990 * 14 13 4 40 40 H 1.09009 * 109.47020 * 299.99822 * 14 13 4 41 41 H 0.97003 * 120.00392 * 359.97438 * 15 14 13 42 42 H 1.08999 * 109.67848 * 55.85974 * 20 18 16 43 43 H 1.09003 * 109.67573 * 295.31265 * 20 18 16 44 44 H 1.08001 * 119.89253 * 359.52803 * 23 22 21 45 45 H 1.07996 * 120.02311 * 180.02562 * 24 23 22 46 46 H 1.08003 * 120.00419 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.84021 * 179.97438 * 26 25 24 48 48 H 1.08997 * 109.43979 * 101.99114 * 28 27 22 49 49 H 1.08995 * 109.44055 * 221.86614 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.4424 1.1850 6 1 3.8233 0.8648 2.0206 7 6 5.3562 2.1846 1.3129 8 7 5.5892 3.1900 0.4961 9 14 6.5945 1.7565 2.6443 10 1 6.1009 0.5931 3.4239 11 1 7.8969 1.4152 2.0177 12 1 6.7706 2.9207 3.5493 13 6 4.2370 1.4426 -1.2697 14 6 4.6115 0.0068 -1.6425 15 7 5.3440 0.0070 -2.9112 16 6 5.7772 -1.1548 -3.4394 17 8 5.5610 -2.2004 -2.8641 18 6 6.5302 -1.1547 -4.7448 19 1 7.4427 -0.5673 -4.6425 20 6 5.6505 -0.5551 -5.8492 21 8 6.4242 -0.4731 -7.0468 22 6 7.1091 -1.5794 -7.4372 23 6 7.5634 -1.6501 -8.7505 24 6 8.2713 -2.7529 -9.1819 25 6 8.5303 -3.7926 -8.3076 26 6 8.0788 -3.7269 -7.0040 27 6 7.3667 -2.6228 -6.5657 28 6 6.8821 -2.5919 -5.1384 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.4042 3.7084 0.5852 37 1 5.1433 2.0393 -1.1663 38 1 3.6085 1.8689 -2.0516 39 1 3.7052 -0.5899 -1.7459 40 1 5.2400 -0.4195 -0.8605 41 1 5.5166 0.8432 -3.3715 42 1 5.3214 0.4417 -5.5557 43 1 4.7833 -1.1944 -6.0153 44 1 7.3614 -0.8389 -9.4343 45 1 8.6229 -2.8044 -10.2018 46 1 9.0847 -4.6561 -8.6444 47 1 8.2820 -4.5404 -6.3233 48 1 5.9979 -3.2219 -5.0417 49 1 7.6667 -2.9660 -4.4807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714653980.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:57 Heat of formation + Delta-G solvation = -62.890285 kcal Electronic energy + Delta-G solvation = -28362.605866 eV Core-core repulsion = 24481.995488 eV Total energy + Delta-G solvation = -3880.610377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.00765 -40.53873 -38.44066 -38.24654 -35.83658 -35.27382 -34.61511 -32.70585 -31.87826 -31.19320 -29.69163 -27.35245 -26.77624 -25.91054 -24.67236 -23.52377 -22.67545 -22.11468 -21.72836 -20.73386 -18.92757 -18.83498 -18.28357 -17.51817 -17.03421 -16.73162 -16.64029 -16.42221 -16.00435 -15.84698 -15.60715 -15.22690 -15.04944 -14.82214 -14.70472 -14.38760 -14.31325 -14.27967 -13.97083 -13.85956 -13.36801 -13.06787 -12.92288 -12.73838 -12.67580 -12.52010 -12.50596 -12.24518 -12.15636 -12.02947 -11.89721 -11.86290 -11.69004 -11.63704 -11.34301 -10.94886 -10.56248 -10.08557 -9.75209 -9.15893 -8.59876 -7.85206 -5.50921 0.34830 0.45442 1.40311 1.45741 1.47755 1.54345 2.02915 2.27700 2.48518 2.79814 3.20140 3.35233 3.49236 3.58680 3.78556 3.83083 3.94830 4.07240 4.21474 4.26361 4.33545 4.35116 4.38655 4.40632 4.49844 4.53592 4.60233 4.67488 4.70667 4.73859 4.84949 4.86016 4.92197 4.99506 5.08593 5.16283 5.22496 5.26245 5.33612 5.37787 5.43318 5.51696 5.59693 5.61822 5.64635 5.75695 5.84627 6.39389 6.43115 6.52058 7.12266 7.17659 7.81814 8.33615 9.08154 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.002592 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.091403 B =10799.944534 C =11715.330155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.268 4.268 6 H 0.050 0.950 7 C -0.027 4.027 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.142 3.858 14 C 0.121 3.879 15 N -0.709 5.709 16 C 0.519 3.481 17 O -0.580 6.580 18 C -0.136 4.136 19 H 0.121 0.879 20 C 0.076 3.924 21 O -0.317 6.317 22 C 0.104 3.896 23 C -0.158 4.158 24 C -0.088 4.088 25 C -0.152 4.152 26 C -0.095 4.095 27 C -0.169 4.169 28 C -0.055 4.055 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.028 0.972 41 H 0.413 0.587 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.141 0.859 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.136 0.864 48 H 0.077 0.923 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 -9.075 -19.718 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.318 5.318 5 C -0.398 4.398 6 H 0.067 0.933 7 C -0.225 4.225 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.014 3.986 14 C -0.006 4.006 15 N -0.361 5.361 16 C 0.305 3.695 17 O -0.460 6.460 18 C -0.158 4.158 19 H 0.139 0.861 20 C 0.001 3.999 21 O -0.231 6.231 22 C 0.060 3.940 23 C -0.176 4.176 24 C -0.106 4.106 25 C -0.170 4.170 26 C -0.113 4.113 27 C -0.170 4.170 28 C -0.093 4.093 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.249 0.751 42 H 0.152 0.848 43 H 0.090 0.910 44 H 0.159 0.841 45 H 0.174 0.826 46 H 0.167 0.833 47 H 0.154 0.846 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.981 -9.461 -19.358 21.637 hybrid contribution 0.828 0.104 1.243 1.497 sum 2.809 -9.357 -18.115 20.582 Atomic orbital electron populations 1.21655 0.94274 1.01761 1.02027 1.22025 0.96421 0.98758 1.00241 1.21063 0.83287 0.94464 0.99163 1.43849 1.00870 1.85354 1.01699 1.19144 1.06563 1.21998 0.92097 0.93260 1.25728 1.02114 0.94804 0.99851 1.70061 1.26194 1.17823 1.41059 0.85543 0.79480 0.77760 0.79675 1.19879 1.21687 1.21311 1.20960 0.98745 0.92157 0.86697 1.21910 0.94285 1.00933 0.83445 1.46000 1.56569 1.09415 1.24104 1.20644 0.78709 0.83359 0.86743 1.90682 1.58560 1.32921 1.63834 1.21958 1.00991 1.00500 0.92344 0.86101 1.23006 0.91687 1.04210 0.81020 1.86015 1.60723 1.33860 1.42492 1.19035 0.94612 0.86728 0.93667 1.20892 1.02846 1.01040 0.92824 1.21319 0.96168 0.92124 1.00999 1.21387 1.01957 1.00367 0.93243 1.21176 0.96234 0.96724 0.97125 1.19921 1.04718 0.96880 0.95452 1.20223 1.02191 0.94590 0.92277 0.92307 0.92678 0.91985 0.93461 0.94450 0.94391 0.93412 0.93724 0.90959 0.93119 0.93165 0.95351 0.75104 0.84785 0.90973 0.84085 0.82556 0.83339 0.84649 0.90438 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 16 2 C -0.13 -4.72 6.26 30.59 0.19 -4.52 16 3 C 0.15 5.84 5.71 86.38 0.49 6.34 16 4 N -0.60 -28.41 2.43 -701.99 -1.71 -30.12 16 5 C -0.27 -14.33 9.42 84.04 0.79 -13.54 16 6 H 0.05 2.71 7.92 -2.91 -0.02 2.69 16 7 C -0.03 -1.44 5.00 84.86 0.42 -1.02 16 8 N -0.91 -50.32 11.44 21.65 0.25 -50.07 16 9 Si 0.95 44.21 29.60 68.60 2.03 46.24 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 C 0.14 6.06 5.50 86.37 0.47 6.54 16 14 C 0.12 4.78 5.97 86.38 0.52 5.30 16 15 N -0.71 -22.07 5.43 -463.07 -2.52 -24.58 16 16 C 0.52 16.23 7.16 87.66 0.63 16.86 16 17 O -0.58 -23.06 15.81 -3.03 -0.05 -23.11 16 18 C -0.14 -3.22 2.76 -11.37 -0.03 -3.25 16 19 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 20 C 0.08 1.53 6.25 72.12 0.45 1.98 16 21 O -0.32 -7.09 10.27 -91.84 -0.94 -8.04 16 22 C 0.10 2.32 6.47 22.52 0.15 2.46 16 23 C -0.16 -2.87 9.94 22.42 0.22 -2.65 16 24 C -0.09 -1.27 10.04 22.22 0.22 -1.05 16 25 C -0.15 -2.25 10.04 22.25 0.22 -2.03 16 26 C -0.09 -1.75 9.67 22.30 0.22 -1.53 16 27 C -0.17 -3.73 5.75 -19.75 -0.11 -3.84 16 28 C -0.06 -1.33 4.66 29.90 0.14 -1.19 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.68 6.65 -2.39 -0.02 1.67 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 35 H 0.05 1.76 7.86 -2.39 -0.02 1.74 16 36 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 37 H 0.07 3.54 5.53 -2.39 -0.01 3.53 16 38 H 0.05 1.93 7.83 -2.39 -0.02 1.92 16 39 H 0.05 2.02 6.65 -2.39 -0.02 2.01 16 40 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.41 10.35 7.87 -92.71 -0.73 9.62 16 42 H 0.13 2.11 7.49 -2.39 -0.02 2.10 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 46 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 48 H 0.08 2.03 7.72 -2.39 -0.02 2.01 16 49 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -66.59 396.04 2.98 -63.61 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.21 Total: 24.25 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.71 Total: 1.83 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.97 Total: -104.78 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.99 Total: -31.15 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -66.59 2.98 -63.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714653980.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.716 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds