Wall clock time and date at job start Tue Mar 31 2020 16:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46915 * 2 1 4 4 N 1.46497 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99638 * 270.31823 * 4 3 2 6 6 H 1.07999 * 120.00246 * 326.14647 * 5 4 3 7 7 C 1.38811 * 119.99790 * 146.14662 * 5 4 3 8 8 N 1.31630 * 120.00210 * 336.89997 * 7 5 4 9 9 Si 1.86802 * 120.00059 * 156.90281 * 7 5 4 10 10 H 1.48500 * 109.47088 * 90.00334 * 9 7 5 11 11 H 1.48506 * 109.47160 * 209.99652 * 9 7 5 12 12 H 1.48498 * 109.47105 * 329.99940 * 9 7 5 13 13 C 1.46498 * 120.00286 * 90.32076 * 4 3 2 14 14 C 1.53004 * 109.47197 * 89.99664 * 13 4 3 15 15 N 1.46498 * 109.47197 * 179.97438 * 14 13 4 16 16 C 1.34774 * 120.00345 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99689 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00399 * 180.02562 * 16 15 14 19 19 H 1.08994 * 109.69099 * 300.00162 * 18 16 15 20 20 C 1.53409 * 109.69676 * 60.55522 * 18 16 15 21 21 O 1.42900 * 108.33328 * 184.40713 * 20 18 16 22 22 C 1.35845 * 117.88188 * 310.83208 * 21 20 18 23 23 C 1.39153 * 118.49819 * 196.96432 * 22 21 20 24 24 C 1.37964 * 120.21597 * 180.39834 * 23 22 21 25 25 C 1.38288 * 119.95789 * 0.02562 * 24 23 22 26 26 C 1.38100 * 119.98554 * 359.92877 * 25 24 23 27 27 C 1.38371 * 121.80626 * 17.25044 * 22 21 20 28 28 C 1.50766 * 121.40141 * 359.48223 * 27 22 21 29 29 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47412 * 299.99763 * 1 2 3 31 31 H 1.09004 * 109.46966 * 60.00953 * 1 2 3 32 32 H 1.08998 * 109.47231 * 239.99739 * 2 1 3 33 33 H 1.09000 * 109.46849 * 119.99804 * 2 1 3 34 34 H 1.09003 * 109.47237 * 59.99373 * 3 2 1 35 35 H 1.09004 * 109.47075 * 300.00086 * 3 2 1 36 36 H 0.96998 * 119.99924 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46943 * 330.00011 * 13 4 3 38 38 H 1.09001 * 109.47511 * 209.99989 * 13 4 3 39 39 H 1.09000 * 109.46891 * 60.00315 * 14 13 4 40 40 H 1.08992 * 109.47309 * 300.00482 * 14 13 4 41 41 H 0.97003 * 120.00198 * 0.02562 * 15 14 13 42 42 H 1.08996 * 109.68390 * 304.17726 * 20 18 16 43 43 H 1.08999 * 109.68206 * 64.73367 * 20 18 16 44 44 H 1.07998 * 119.88514 * 0.40319 * 23 22 21 45 45 H 1.08003 * 120.02099 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.00695 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.84520 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.43470 * 257.75599 * 28 27 22 49 49 H 1.09007 * 109.39993 * 137.87402 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.4362 1.1868 6 1 3.7860 1.9526 2.0455 7 6 5.4006 0.7660 1.2856 8 7 5.6828 -0.2104 0.4493 9 14 6.6307 1.2498 2.6056 10 1 6.3753 0.4566 3.8348 11 1 8.0084 0.9813 2.1207 12 1 6.4863 2.6959 2.9107 13 6 4.2380 1.4495 -1.2677 14 6 4.4931 2.8944 -1.7015 15 7 5.2267 2.9014 -2.9695 16 6 5.5644 4.0717 -3.5464 17 8 5.2605 5.1192 -3.0158 18 6 6.3186 4.0789 -4.8510 19 1 7.2716 3.5647 -4.7272 20 6 5.4881 3.3753 -5.9321 21 8 6.2701 3.3071 -7.1262 22 6 6.8732 4.4457 -7.5566 23 6 7.3286 4.5001 -8.8704 24 6 7.9536 5.6360 -9.3421 25 6 8.1293 6.7246 -8.5076 26 6 7.6779 6.6745 -7.2034 27 6 7.0478 5.5377 -6.7248 28 6 6.5651 5.5224 -5.2966 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.5293 -0.6790 0.5186 37 1 3.6493 0.9398 -2.0304 38 1 5.1904 0.9350 -1.1398 39 1 5.0818 3.4042 -0.9388 40 1 3.5408 3.4089 -1.8294 41 1 5.4695 2.0636 -3.3940 42 1 5.2323 2.3687 -5.6015 43 1 4.5770 3.9424 -6.1223 44 1 7.1921 3.6504 -9.5228 45 1 8.3054 5.6750 -10.3625 46 1 8.6189 7.6141 -8.8759 47 1 7.8159 7.5262 -6.5538 48 1 5.6368 6.0888 -5.2214 49 1 7.3199 5.9764 -4.6544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714653981.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:01 Heat of formation + Delta-G solvation = -45.248963 kcal Electronic energy + Delta-G solvation = -28201.591904 eV Core-core repulsion = 24321.746511 eV Total energy + Delta-G solvation = -3879.845392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.08806 -39.31405 -37.62680 -36.51737 -34.46672 -34.24470 -32.86252 -31.27165 -30.66436 -30.43674 -28.14548 -25.91318 -25.59107 -24.72737 -23.13249 -22.71459 -21.44425 -20.89388 -19.97298 -19.55773 -18.05884 -17.55281 -16.68580 -16.50822 -15.78700 -15.47934 -15.35463 -14.95372 -14.85140 -14.41599 -14.28039 -14.03692 -13.87231 -13.78346 -13.47307 -13.31821 -13.13763 -12.95598 -12.65081 -12.50547 -12.00646 -11.94639 -11.68505 -11.35305 -11.28454 -11.09293 -11.03011 -10.91568 -10.79113 -10.76793 -10.52492 -10.31606 -10.01455 -9.98571 -9.72918 -9.59980 -9.00488 -8.66290 -8.54303 -8.37500 -6.72167 -5.87832 -3.41066 1.09009 1.20290 2.74097 3.01815 3.30973 3.39292 3.40836 3.45315 3.55479 4.31146 4.41641 4.44231 4.56497 4.63519 4.81428 4.86904 5.03040 5.11827 5.22142 5.24265 5.28113 5.34687 5.43520 5.50058 5.71966 5.74485 5.75948 5.79909 5.90943 6.04188 6.06019 6.10486 6.14322 6.24903 6.25424 6.30812 6.46059 6.48835 6.54025 6.59009 6.65987 6.77340 6.97051 7.01822 7.20430 7.21856 7.53302 7.75506 7.79632 8.40103 8.44094 9.09050 9.72834 10.28006 11.12727 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.002486 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.413600 B =11258.419890 C =12238.088964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.286 1.286 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.133 3.867 14 C 0.098 3.902 15 N -0.717 5.717 16 C 0.516 3.484 17 O -0.540 6.540 18 C -0.148 4.148 19 H 0.111 0.889 20 C 0.074 3.926 21 O -0.311 6.311 22 C 0.128 3.872 23 C -0.148 4.148 24 C -0.092 4.092 25 C -0.153 4.153 26 C -0.084 4.084 27 C -0.154 4.154 28 C -0.059 4.059 29 H 0.042 0.958 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.255 0.745 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.398 0.602 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.090 0.910 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 7.731 -17.785 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.081 0.919 7 C -0.191 4.191 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.005 3.995 14 C -0.027 4.027 15 N -0.367 5.367 16 C 0.300 3.700 17 O -0.418 6.418 18 C -0.170 4.170 19 H 0.129 0.871 20 C -0.002 4.002 21 O -0.224 6.224 22 C 0.083 3.917 23 C -0.167 4.167 24 C -0.110 4.110 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.155 4.155 28 C -0.097 4.097 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.231 0.769 42 H 0.133 0.867 43 H 0.090 0.910 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.109 0.891 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.439 8.174 -17.432 19.307 hybrid contribution 0.836 -0.161 0.694 1.099 sum 2.275 8.013 -16.738 18.696 Atomic orbital electron populations 1.21761 0.97754 1.00342 1.00713 1.22074 0.93058 1.00744 1.02079 1.20975 0.85012 0.93544 0.98359 1.43704 0.99484 1.84838 1.01967 1.19076 1.02782 1.26541 0.90272 0.91854 1.25068 1.00631 0.95178 0.98176 1.69963 1.23624 1.20035 1.39357 0.86421 0.80870 0.78750 0.81535 1.21242 1.21482 1.20291 1.21107 1.00809 0.90889 0.86689 1.22385 0.94763 1.02784 0.82778 1.46158 1.57524 1.07754 1.25284 1.20093 0.79727 0.84367 0.85804 1.90700 1.54674 1.31607 1.64808 1.22031 1.01371 0.99459 0.94150 0.87096 1.22962 0.92450 1.02756 0.82017 1.86036 1.63032 1.30829 1.42537 1.18754 0.94526 0.85798 0.92638 1.20600 1.03292 0.99746 0.93036 1.20919 0.97789 0.92601 0.99685 1.21022 1.02791 0.99131 0.94147 1.20927 0.96585 0.96855 0.95826 1.19921 1.04271 0.95054 0.96219 1.20307 1.03154 0.94940 0.91260 0.93863 0.93384 0.93678 0.93103 0.91849 0.93839 0.94841 0.93540 0.95381 0.87690 0.91585 0.93173 0.76851 0.86688 0.90974 0.85234 0.85514 0.85913 0.85670 0.89122 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.14 -2.65 6.26 -26.73 -0.17 -2.81 16 3 C 0.15 2.98 5.67 -4.04 -0.02 2.95 16 4 N -0.58 -13.63 2.45 -173.24 -0.42 -14.05 16 5 C -0.26 -6.73 9.48 -15.06 -0.14 -6.87 16 6 H 0.06 1.67 7.93 -52.49 -0.42 1.26 16 7 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 8 N -0.89 -24.09 11.31 55.49 0.63 -23.47 16 9 Si 0.90 21.10 29.61 -169.99 -5.03 16.07 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.13 2.83 5.41 -4.04 -0.02 2.81 16 14 C 0.10 1.90 6.00 -4.04 -0.02 1.88 16 15 N -0.72 -11.15 5.44 -60.30 -0.33 -11.47 16 16 C 0.52 7.98 7.16 -10.99 -0.08 7.90 16 17 O -0.54 -10.42 15.79 5.55 0.09 -10.34 16 18 C -0.15 -1.77 2.75 -91.53 -0.25 -2.02 16 19 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 20 C 0.07 0.78 6.26 37.37 0.23 1.01 16 21 O -0.31 -3.65 10.27 -19.25 -0.20 -3.85 16 22 C 0.13 1.49 6.47 -39.19 -0.25 1.23 16 23 C -0.15 -1.49 9.94 -39.34 -0.39 -1.88 16 24 C -0.09 -0.79 10.04 -39.66 -0.40 -1.19 16 25 C -0.15 -1.33 10.04 -39.61 -0.40 -1.72 16 26 C -0.08 -0.83 9.67 -39.53 -0.38 -1.21 16 27 C -0.15 -1.74 5.75 -104.44 -0.60 -2.34 16 28 C -0.06 -0.70 4.66 -27.82 -0.13 -0.83 16 29 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 35 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 36 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 38 H 0.11 2.54 5.31 -51.93 -0.28 2.26 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.40 5.17 7.91 -40.82 -0.32 4.85 16 42 H 0.12 1.01 7.53 -51.93 -0.39 0.62 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 47 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 48 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 49 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -30.25 399.15 -10.12 -40.36 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.12 Total: 5.51 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.75 Total: -4.78 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.12 Total: -48.99 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.11 Total: -14.19 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.25 -10.12 -40.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714653981.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.888 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds