Wall clock time and date at job start Tue Mar 31 2020 16:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46915 * 2 1 4 4 N 1.46497 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.36936 * 119.99638 * 270.31823 * 4 3 2 6 6 H 1.07999 * 120.00246 * 326.14647 * 5 4 3 7 7 C 1.38811 * 119.99790 * 146.14662 * 5 4 3 8 8 N 1.31630 * 120.00210 * 336.89997 * 7 5 4 9 9 Si 1.86802 * 120.00059 * 156.90281 * 7 5 4 10 10 H 1.48500 * 109.47088 * 90.00334 * 9 7 5 11 11 H 1.48506 * 109.47160 * 209.99652 * 9 7 5 12 12 H 1.48498 * 109.47105 * 329.99940 * 9 7 5 13 13 C 1.46498 * 120.00286 * 90.32076 * 4 3 2 14 14 C 1.53004 * 109.47197 * 89.99664 * 13 4 3 15 15 N 1.46498 * 109.47197 * 179.97438 * 14 13 4 16 16 C 1.34774 * 120.00345 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99689 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00399 * 180.02562 * 16 15 14 19 19 H 1.08994 * 109.69099 * 300.00162 * 18 16 15 20 20 C 1.53409 * 109.69676 * 60.55522 * 18 16 15 21 21 O 1.42900 * 108.33328 * 184.40713 * 20 18 16 22 22 C 1.35845 * 117.88188 * 310.83208 * 21 20 18 23 23 C 1.39153 * 118.49819 * 196.96432 * 22 21 20 24 24 C 1.37964 * 120.21597 * 180.39834 * 23 22 21 25 25 C 1.38288 * 119.95789 * 0.02562 * 24 23 22 26 26 C 1.38100 * 119.98554 * 359.92877 * 25 24 23 27 27 C 1.38371 * 121.80626 * 17.25044 * 22 21 20 28 28 C 1.50766 * 121.40141 * 359.48223 * 27 22 21 29 29 H 1.09007 * 109.46888 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47412 * 299.99763 * 1 2 3 31 31 H 1.09004 * 109.46966 * 60.00953 * 1 2 3 32 32 H 1.08998 * 109.47231 * 239.99739 * 2 1 3 33 33 H 1.09000 * 109.46849 * 119.99804 * 2 1 3 34 34 H 1.09003 * 109.47237 * 59.99373 * 3 2 1 35 35 H 1.09004 * 109.47075 * 300.00086 * 3 2 1 36 36 H 0.96998 * 119.99924 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46943 * 330.00011 * 13 4 3 38 38 H 1.09001 * 109.47511 * 209.99989 * 13 4 3 39 39 H 1.09000 * 109.46891 * 60.00315 * 14 13 4 40 40 H 1.08992 * 109.47309 * 300.00482 * 14 13 4 41 41 H 0.97003 * 120.00198 * 0.02562 * 15 14 13 42 42 H 1.08996 * 109.68390 * 304.17726 * 20 18 16 43 43 H 1.08999 * 109.68206 * 64.73367 * 20 18 16 44 44 H 1.07998 * 119.88514 * 0.40319 * 23 22 21 45 45 H 1.08003 * 120.02099 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.00695 * 179.97438 * 25 24 23 47 47 H 1.08005 * 119.84520 * 180.02562 * 26 25 24 48 48 H 1.09005 * 109.43470 * 257.75599 * 28 27 22 49 49 H 1.09007 * 109.39993 * 137.87402 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.4362 1.1868 6 1 3.7860 1.9526 2.0455 7 6 5.4006 0.7660 1.2856 8 7 5.6828 -0.2104 0.4493 9 14 6.6307 1.2498 2.6056 10 1 6.3753 0.4566 3.8348 11 1 8.0084 0.9813 2.1207 12 1 6.4863 2.6959 2.9107 13 6 4.2380 1.4495 -1.2677 14 6 4.4931 2.8944 -1.7015 15 7 5.2267 2.9014 -2.9695 16 6 5.5644 4.0717 -3.5464 17 8 5.2605 5.1192 -3.0158 18 6 6.3186 4.0789 -4.8510 19 1 7.2716 3.5647 -4.7272 20 6 5.4881 3.3753 -5.9321 21 8 6.2701 3.3071 -7.1262 22 6 6.8732 4.4457 -7.5566 23 6 7.3286 4.5001 -8.8704 24 6 7.9536 5.6360 -9.3421 25 6 8.1293 6.7246 -8.5076 26 6 7.6779 6.6745 -7.2034 27 6 7.0478 5.5377 -6.7248 28 6 6.5651 5.5224 -5.2966 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.5293 -0.6790 0.5186 37 1 3.6493 0.9398 -2.0304 38 1 5.1904 0.9350 -1.1398 39 1 5.0818 3.4042 -0.9388 40 1 3.5408 3.4089 -1.8294 41 1 5.4695 2.0636 -3.3940 42 1 5.2323 2.3687 -5.6015 43 1 4.5770 3.9424 -6.1223 44 1 7.1921 3.6504 -9.5228 45 1 8.3054 5.6750 -10.3625 46 1 8.6189 7.6141 -8.8759 47 1 7.8159 7.5262 -6.5538 48 1 5.6368 6.0888 -5.2214 49 1 7.3199 5.9764 -4.6544 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714653981.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:00 Heat of formation + Delta-G solvation = -61.716683 kcal Electronic energy + Delta-G solvation = -28202.305998 eV Core-core repulsion = 24321.746511 eV Total energy + Delta-G solvation = -3880.559486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00137 -40.53232 -38.43054 -38.22265 -35.87673 -35.27028 -34.55822 -32.73396 -31.86421 -31.18904 -29.67576 -27.33310 -26.77534 -25.88841 -24.55789 -23.51826 -23.00988 -22.00239 -21.56129 -20.71823 -18.93585 -18.84012 -18.24625 -17.53552 -16.95295 -16.74724 -16.65234 -16.41757 -15.97276 -15.84938 -15.61080 -15.24621 -15.09156 -14.79336 -14.67367 -14.42514 -14.31853 -14.13722 -13.98570 -13.83220 -13.64443 -13.04666 -12.74883 -12.73147 -12.57567 -12.52849 -12.49491 -12.19055 -12.15238 -12.04022 -11.87720 -11.80999 -11.72827 -11.63112 -11.32560 -10.95983 -10.56069 -10.09967 -9.74899 -9.15506 -8.64266 -7.86796 -5.42739 0.35142 0.45778 1.42077 1.46764 1.47930 1.55113 2.02721 2.27681 2.50486 2.80148 3.21463 3.35829 3.49215 3.58808 3.79034 3.83458 3.95222 4.07608 4.26512 4.27355 4.34733 4.37330 4.38426 4.40827 4.50640 4.54995 4.60686 4.68529 4.70894 4.79274 4.82939 4.85562 4.92583 4.97190 5.08923 5.16593 5.23644 5.28299 5.33875 5.37372 5.46983 5.51989 5.59989 5.61488 5.66407 5.81367 5.84865 6.39585 6.42452 6.51996 7.11960 7.17398 7.83396 8.32806 9.09974 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.002486 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.413600 B =11258.419890 C =12238.088964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.144 3.856 4 N -0.597 5.597 5 C -0.266 4.266 6 H 0.054 0.946 7 C -0.031 4.031 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.140 3.860 14 C 0.120 3.880 15 N -0.709 5.709 16 C 0.520 3.480 17 O -0.580 6.580 18 C -0.136 4.136 19 H 0.121 0.879 20 C 0.076 3.924 21 O -0.317 6.317 22 C 0.104 3.896 23 C -0.158 4.158 24 C -0.088 4.088 25 C -0.152 4.152 26 C -0.094 4.094 27 C -0.169 4.169 28 C -0.056 4.056 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.048 0.952 41 H 0.413 0.587 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.141 0.859 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.136 0.864 48 H 0.078 0.922 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 8.121 -19.784 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.396 4.396 6 H 0.072 0.928 7 C -0.229 4.229 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.013 3.987 14 C -0.007 4.007 15 N -0.360 5.360 16 C 0.306 3.694 17 O -0.460 6.460 18 C -0.158 4.158 19 H 0.139 0.861 20 C 0.001 3.999 21 O -0.231 6.231 22 C 0.060 3.940 23 C -0.176 4.176 24 C -0.106 4.106 25 C -0.170 4.170 26 C -0.112 4.112 27 C -0.170 4.170 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.249 0.751 42 H 0.152 0.848 43 H 0.090 0.910 44 H 0.159 0.841 45 H 0.174 0.826 46 H 0.167 0.833 47 H 0.154 0.846 48 H 0.096 0.904 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.441 8.548 -19.456 21.300 hybrid contribution 0.821 -0.219 1.253 1.514 sum 2.262 8.329 -18.203 20.146 Atomic orbital electron populations 1.21670 0.94299 1.01686 1.01953 1.21911 0.96023 0.99105 0.99965 1.21104 0.83303 0.94570 0.99178 1.43937 1.00926 1.85068 1.01843 1.19213 1.03346 1.25974 0.91067 0.92822 1.25599 1.01841 0.95409 1.00044 1.70057 1.23727 1.20770 1.40632 0.85610 0.79023 0.78113 0.79709 1.21008 1.21550 1.20517 1.20972 0.99682 0.91638 0.86433 1.21853 0.94366 1.00935 0.83519 1.45975 1.57152 1.08817 1.24064 1.20634 0.78915 0.83383 0.86478 1.90683 1.56204 1.32974 1.66101 1.21947 1.01358 1.00129 0.92345 0.86102 1.23019 0.91968 1.03602 0.81336 1.86027 1.63320 1.31185 1.42616 1.19038 0.95544 0.85912 0.93537 1.20889 1.03302 1.00821 0.92625 1.21315 0.96527 0.91771 1.01003 1.21383 1.01944 1.00114 0.93519 1.21176 0.96470 0.96763 0.96826 1.19926 1.05453 0.95900 0.95708 1.20224 1.02472 0.94539 0.92065 0.92511 0.92674 0.91891 0.94072 0.95068 0.94109 0.92807 0.93813 0.93735 0.90138 0.95050 0.93353 0.75107 0.84820 0.90954 0.84125 0.82579 0.83340 0.84616 0.90401 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.13 -4.86 6.26 30.60 0.19 -4.67 16 3 C 0.14 5.74 5.67 86.38 0.49 6.23 16 4 N -0.60 -28.32 2.45 -702.00 -1.72 -30.05 16 5 C -0.27 -14.16 9.48 84.03 0.80 -13.36 16 6 H 0.05 2.91 7.93 -2.91 -0.02 2.88 16 7 C -0.03 -1.68 4.95 84.86 0.42 -1.26 16 8 N -0.91 -50.04 11.31 21.65 0.24 -49.79 16 9 Si 0.95 44.03 29.61 68.60 2.03 46.06 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.14 6.00 5.41 86.38 0.47 6.47 16 14 C 0.12 4.69 6.00 86.38 0.52 5.21 16 15 N -0.71 -21.84 5.44 -463.07 -2.52 -24.36 16 16 C 0.52 16.06 7.16 87.66 0.63 16.68 16 17 O -0.58 -22.76 15.79 -3.05 -0.05 -22.81 16 18 C -0.14 -3.19 2.75 -11.38 -0.03 -3.22 16 19 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 20 C 0.08 1.53 6.26 72.12 0.45 1.98 16 21 O -0.32 -7.11 10.27 -91.81 -0.94 -8.05 16 22 C 0.10 2.32 6.47 22.52 0.15 2.46 16 23 C -0.16 -2.88 9.94 22.42 0.22 -2.66 16 24 C -0.09 -1.27 10.04 22.22 0.22 -1.05 16 25 C -0.15 -2.24 10.04 22.25 0.22 -2.02 16 26 C -0.09 -1.73 9.67 22.30 0.22 -1.52 16 27 C -0.17 -3.71 5.75 -19.75 -0.11 -3.82 16 28 C -0.06 -1.32 4.66 29.89 0.14 -1.18 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 35 H 0.05 1.92 8.07 -2.38 -0.02 1.90 16 36 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 37 H 0.04 1.74 8.07 -2.39 -0.02 1.72 16 38 H 0.08 3.95 5.31 -2.39 -0.01 3.93 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.41 10.35 7.91 -92.71 -0.73 9.62 16 42 H 0.13 2.12 7.53 -2.39 -0.02 2.10 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 45 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 46 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 47 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.08 2.02 7.70 -2.38 -0.02 2.00 16 49 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -66.12 399.15 2.95 -63.18 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.20 Total: 24.66 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.70 Total: 1.17 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -3.99 Total: -104.20 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.99 Total: -30.87 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.12 2.95 -63.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714653981.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.460 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds