Wall clock time and date at job start Tue Mar 31 2020 16:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47431 * 2 1 4 4 N 1.46500 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00216 * 269.99309 * 4 3 2 6 6 H 1.08001 * 119.99288 * 37.25193 * 5 4 3 7 7 C 1.38809 * 120.00277 * 217.24842 * 5 4 3 8 8 N 1.31619 * 120.00059 * 21.83287 * 7 5 4 9 9 Si 1.86804 * 120.00042 * 201.83316 * 7 5 4 10 10 H 1.48498 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47193 * 120.00024 * 9 7 5 12 12 H 1.48501 * 109.46953 * 240.00044 * 9 7 5 13 13 C 1.46501 * 120.00044 * 90.00222 * 4 3 2 14 14 C 1.53006 * 109.46821 * 264.77929 * 13 4 3 15 15 N 1.46494 * 109.47295 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00563 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99316 * 5.06144 * 16 15 14 18 18 C 1.50702 * 120.00553 * 185.06171 * 16 15 14 19 19 H 1.09002 * 109.39655 * 25.78230 * 18 16 15 20 20 C 1.53056 * 109.43688 * 145.67154 * 18 16 15 21 21 C 1.53407 * 108.31696 * 168.24050 * 20 18 16 22 22 O 1.42831 * 108.37287 * 295.31119 * 21 20 18 23 23 C 1.35838 * 117.85010 * 49.24633 * 22 21 20 24 24 C 1.39138 * 118.50041 * 162.72860 * 23 22 21 25 25 C 1.37970 * 120.21785 * 179.73900 * 24 23 22 26 26 C 1.38290 * 119.95294 * 359.72242 * 25 24 23 27 27 C 1.38109 * 119.98703 * 0.60584 * 26 25 24 28 28 C 1.38376 * 121.80218 * 342.62321 * 23 22 21 29 29 H 1.09001 * 109.47133 * 60.00543 * 1 2 3 30 30 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47088 * 300.00385 * 1 2 3 32 32 H 1.08992 * 109.47377 * 239.99476 * 2 1 3 33 33 H 1.09008 * 109.47223 * 119.99858 * 2 1 3 34 34 H 1.09000 * 109.47298 * 59.99744 * 3 2 1 35 35 H 1.09003 * 109.46831 * 299.99390 * 3 2 1 36 36 H 0.96999 * 120.00135 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47385 * 144.77924 * 13 4 3 38 38 H 1.09008 * 109.47193 * 24.77487 * 13 4 3 39 39 H 1.08997 * 109.47145 * 59.99848 * 14 13 4 40 40 H 1.08999 * 109.47267 * 300.00219 * 14 13 4 41 41 H 0.97007 * 119.99761 * 0.02562 * 15 14 13 42 42 H 1.09008 * 109.69147 * 48.53377 * 20 18 16 43 43 H 1.09005 * 109.72930 * 287.97128 * 20 18 16 44 44 H 1.08999 * 109.68179 * 175.58669 * 21 20 18 45 45 H 1.08998 * 109.68113 * 55.02801 * 21 20 18 46 46 H 1.08003 * 119.89709 * 359.75756 * 24 23 22 47 47 H 1.07998 * 120.02895 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.01031 * 180.35618 * 26 25 24 49 49 H 1.07993 * 119.84275 * 179.76833 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8140 0.8767 2.0266 7 6 5.3650 2.1702 1.3097 8 7 5.6072 3.1726 0.4919 9 14 6.6035 1.7267 2.6359 10 1 6.0981 0.5702 3.4184 11 1 7.8988 1.3691 2.0039 12 1 6.7980 2.8885 3.5401 13 6 4.2381 1.4422 -1.2678 14 6 4.6068 0.0055 -1.6435 15 7 5.3393 0.0052 -2.9121 16 6 5.7678 -1.1573 -3.4427 17 8 5.4687 -2.2095 -2.9189 18 6 6.6187 -1.1498 -4.6865 19 1 7.1536 -0.2024 -4.7534 20 6 7.6262 -2.3000 -4.6213 21 6 8.2709 -2.4553 -6.0047 22 8 7.2584 -2.8508 -6.9314 23 6 6.1004 -2.1409 -6.9473 24 6 5.2648 -2.2584 -8.0536 25 6 4.0775 -1.5575 -8.1045 26 6 3.7127 -0.7397 -7.0507 27 6 4.5428 -0.6154 -5.9540 28 6 5.7370 -1.3148 -5.8983 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9562 -0.8901 36 1 6.4286 3.6813 0.5780 37 1 5.1468 2.0348 -1.1624 38 1 3.6120 1.8728 -2.0494 39 1 3.6981 -0.5871 -1.7489 40 1 5.2328 -0.4251 -0.8620 41 1 5.5159 0.8417 -3.3704 42 1 7.1133 -3.2227 -4.3494 43 1 8.3943 -2.0750 -3.8813 44 1 9.0491 -3.2173 -5.9637 45 1 8.7032 -1.5047 -6.3170 46 1 5.5464 -2.9005 -8.8751 47 1 3.4314 -1.6506 -8.9649 48 1 2.7808 -0.1951 -7.0871 49 1 4.2574 0.0269 -5.1340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714659822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:12 Heat of formation + Delta-G solvation = -42.754077 kcal Electronic energy + Delta-G solvation = -29006.998946 eV Core-core repulsion = 25127.261740 eV Total energy + Delta-G solvation = -3879.737206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.12773 -39.09726 -37.63066 -36.53779 -34.31083 -34.24758 -32.90637 -30.93409 -30.71169 -30.34480 -28.44743 -26.30234 -25.59267 -24.01372 -23.40485 -22.63398 -21.12768 -20.69324 -20.18475 -19.66510 -18.09167 -17.12207 -16.83375 -16.53609 -16.14596 -15.54929 -15.14650 -15.05446 -14.69937 -14.35041 -14.27320 -13.95090 -13.87549 -13.71666 -13.38984 -13.25890 -13.05054 -12.78874 -12.61688 -12.44119 -12.04808 -11.64850 -11.61921 -11.53315 -11.23222 -11.13942 -11.02510 -10.98306 -10.77467 -10.76040 -10.46144 -10.37475 -10.10533 -9.91752 -9.80720 -9.57450 -8.90867 -8.60852 -8.49937 -8.29185 -6.66561 -5.85991 -3.46122 1.13837 1.29693 2.84372 3.09962 3.30354 3.39955 3.41505 3.44639 3.70798 4.37409 4.43131 4.48736 4.55029 4.77801 4.94305 4.96318 5.03367 5.12413 5.23650 5.26984 5.32227 5.38962 5.41403 5.47025 5.64120 5.71016 5.73628 5.84398 5.97346 6.00671 6.09417 6.13440 6.19109 6.26379 6.29111 6.39618 6.40290 6.51424 6.59495 6.62530 6.64166 6.83586 6.94396 6.98505 7.14402 7.27142 7.51675 7.77307 7.86143 8.43427 8.51788 9.10601 9.72756 10.30156 11.12374 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003311 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.377904 B = 8453.644622 C = 9931.921474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.135 3.865 14 C 0.098 3.902 15 N -0.719 5.719 16 C 0.520 3.480 17 O -0.539 6.539 18 C -0.066 4.066 19 H 0.101 0.899 20 C -0.147 4.147 21 C 0.064 3.936 22 O -0.316 6.316 23 C 0.140 3.860 24 C -0.152 4.152 25 C -0.086 4.086 26 C -0.149 4.149 27 C -0.080 4.080 28 C -0.146 4.146 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.254 0.746 37 H 0.099 0.901 38 H 0.029 0.971 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.126 0.874 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -6.391 -16.663 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.007 3.993 14 C -0.027 4.027 15 N -0.370 5.370 16 C 0.304 3.696 17 O -0.416 6.416 18 C -0.087 4.087 19 H 0.119 0.881 20 C -0.185 4.185 21 C -0.011 4.011 22 O -0.230 6.230 23 C 0.094 3.906 24 C -0.170 4.170 25 C -0.104 4.104 26 C -0.168 4.168 27 C -0.099 4.099 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.888 -7.150 -16.323 17.842 hybrid contribution 0.841 0.338 0.720 1.158 sum 1.729 -6.812 -15.603 17.112 Atomic orbital electron populations 1.21718 0.97294 1.00419 1.01013 1.22200 0.93876 1.00951 1.01520 1.20949 0.85003 0.92891 0.99004 1.43617 0.99437 1.85036 1.01838 1.19069 1.05383 1.23414 0.91100 0.92022 1.25153 1.00790 0.94720 0.97991 1.69980 1.25450 1.17601 1.39839 0.86356 0.81514 0.78170 0.81567 1.19961 1.21421 1.21566 1.21087 0.99662 0.91714 0.86798 1.22439 0.95052 1.02457 0.82732 1.46244 1.57301 1.08227 1.25226 1.20122 0.80379 0.84343 0.84736 1.90682 1.57286 1.31074 1.62519 1.20201 0.95697 1.01298 0.91509 0.88077 1.22158 0.98761 0.99769 0.97817 1.23001 0.88901 1.01686 0.87484 1.85976 1.23664 1.54408 1.58975 1.18630 0.86871 0.91808 0.93255 1.20565 0.95598 1.03687 0.97193 1.20945 0.95423 0.95566 0.98502 1.21030 1.00354 1.01049 0.94335 1.21072 0.92758 0.97760 0.98274 1.19392 0.98031 1.02339 0.94985 0.93447 0.93807 0.93192 0.92998 0.92398 0.93266 0.94971 0.93587 0.88367 0.95262 0.92915 0.91724 0.76972 0.88719 0.89244 0.87081 0.91590 0.85217 0.85387 0.85651 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.15 0.37 -1.79 16 2 C -0.15 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.15 3.03 5.71 -4.04 -0.02 3.00 16 4 N -0.58 -13.75 2.44 -173.23 -0.42 -14.18 16 5 C -0.26 -6.87 9.43 -15.06 -0.14 -7.01 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.37 4.99 -17.43 -0.09 0.28 16 8 N -0.89 -24.24 11.41 55.49 0.63 -23.61 16 9 Si 0.89 21.13 29.61 -169.99 -5.03 16.10 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.13 2.91 5.49 -4.04 -0.02 2.89 16 14 C 0.10 1.96 5.98 -4.04 -0.02 1.94 16 15 N -0.72 -11.74 4.79 -60.30 -0.29 -12.03 16 16 C 0.52 8.65 5.85 -10.98 -0.06 8.58 16 17 O -0.54 -11.17 16.04 5.56 0.09 -11.08 16 18 C -0.07 -0.84 2.70 -92.86 -0.25 -1.09 16 19 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 20 C -0.15 -1.71 5.34 -26.49 -0.14 -1.85 16 21 C 0.06 0.61 7.03 37.37 0.26 0.87 16 22 O -0.32 -3.83 10.27 -19.23 -0.20 -4.03 16 23 C 0.14 1.78 6.47 -39.20 -0.25 1.52 16 24 C -0.15 -1.68 9.94 -39.35 -0.39 -2.08 16 25 C -0.09 -0.87 10.04 -39.66 -0.40 -1.27 16 26 C -0.15 -1.64 10.04 -39.61 -0.40 -2.04 16 27 C -0.08 -1.02 9.10 -39.53 -0.36 -1.38 16 28 C -0.15 -1.92 5.42 -104.44 -0.57 -2.48 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.97 6.63 -51.93 -0.34 0.62 16 33 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 36 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.10 2.39 5.49 -51.93 -0.28 2.10 16 38 H 0.03 0.58 7.84 -51.92 -0.41 0.17 16 39 H 0.05 1.09 6.63 -51.93 -0.34 0.75 16 40 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.40 5.44 8.35 -40.82 -0.34 5.10 16 42 H 0.09 1.32 7.45 -51.92 -0.39 0.94 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 47 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 49 H 0.13 1.59 6.64 -52.49 -0.35 1.24 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -31.27 394.18 -9.84 -41.11 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.91 Total: 6.48 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.66 Total: -4.71 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.08 Total: -49.81 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.11 Total: -15.11 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.27 -9.84 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714659822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.642 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds