Wall clock time and date at job start Tue Mar 31 2020 16:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47431 * 2 1 4 4 N 1.46500 * 109.47119 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00216 * 269.99309 * 4 3 2 6 6 H 1.08001 * 119.99288 * 37.25193 * 5 4 3 7 7 C 1.38809 * 120.00277 * 217.24842 * 5 4 3 8 8 N 1.31619 * 120.00059 * 21.83287 * 7 5 4 9 9 Si 1.86804 * 120.00042 * 201.83316 * 7 5 4 10 10 H 1.48498 * 109.46996 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47193 * 120.00024 * 9 7 5 12 12 H 1.48501 * 109.46953 * 240.00044 * 9 7 5 13 13 C 1.46501 * 120.00044 * 90.00222 * 4 3 2 14 14 C 1.53006 * 109.46821 * 264.77929 * 13 4 3 15 15 N 1.46494 * 109.47295 * 179.97438 * 14 13 4 16 16 C 1.34777 * 120.00563 * 180.02562 * 15 14 13 17 17 O 1.21279 * 119.99316 * 5.06144 * 16 15 14 18 18 C 1.50702 * 120.00553 * 185.06171 * 16 15 14 19 19 H 1.09002 * 109.39655 * 25.78230 * 18 16 15 20 20 C 1.53056 * 109.43688 * 145.67154 * 18 16 15 21 21 C 1.53407 * 108.31696 * 168.24050 * 20 18 16 22 22 O 1.42831 * 108.37287 * 295.31119 * 21 20 18 23 23 C 1.35838 * 117.85010 * 49.24633 * 22 21 20 24 24 C 1.39138 * 118.50041 * 162.72860 * 23 22 21 25 25 C 1.37970 * 120.21785 * 179.73900 * 24 23 22 26 26 C 1.38290 * 119.95294 * 359.72242 * 25 24 23 27 27 C 1.38109 * 119.98703 * 0.60584 * 26 25 24 28 28 C 1.38376 * 121.80218 * 342.62321 * 23 22 21 29 29 H 1.09001 * 109.47133 * 60.00543 * 1 2 3 30 30 H 1.08998 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47088 * 300.00385 * 1 2 3 32 32 H 1.08992 * 109.47377 * 239.99476 * 2 1 3 33 33 H 1.09008 * 109.47223 * 119.99858 * 2 1 3 34 34 H 1.09000 * 109.47298 * 59.99744 * 3 2 1 35 35 H 1.09003 * 109.46831 * 299.99390 * 3 2 1 36 36 H 0.96999 * 120.00135 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47385 * 144.77924 * 13 4 3 38 38 H 1.09008 * 109.47193 * 24.77487 * 13 4 3 39 39 H 1.08997 * 109.47145 * 59.99848 * 14 13 4 40 40 H 1.08999 * 109.47267 * 300.00219 * 14 13 4 41 41 H 0.97007 * 119.99761 * 0.02562 * 15 14 13 42 42 H 1.09008 * 109.69147 * 48.53377 * 20 18 16 43 43 H 1.09005 * 109.72930 * 287.97128 * 20 18 16 44 44 H 1.08999 * 109.68179 * 175.58669 * 21 20 18 45 45 H 1.08998 * 109.68113 * 55.02801 * 21 20 18 46 46 H 1.08003 * 119.89709 * 359.75756 * 24 23 22 47 47 H 1.07998 * 120.02895 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.01031 * 180.35618 * 26 25 24 49 49 H 1.07993 * 119.84275 * 179.76833 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4427 1.1868 6 1 3.8140 0.8767 2.0266 7 6 5.3650 2.1702 1.3097 8 7 5.6072 3.1726 0.4919 9 14 6.6035 1.7267 2.6359 10 1 6.0981 0.5702 3.4184 11 1 7.8988 1.3691 2.0039 12 1 6.7980 2.8885 3.5401 13 6 4.2381 1.4422 -1.2678 14 6 4.6068 0.0055 -1.6435 15 7 5.3393 0.0052 -2.9121 16 6 5.7678 -1.1573 -3.4427 17 8 5.4687 -2.2095 -2.9189 18 6 6.6187 -1.1498 -4.6865 19 1 7.1536 -0.2024 -4.7534 20 6 7.6262 -2.3000 -4.6213 21 6 8.2709 -2.4553 -6.0047 22 8 7.2584 -2.8508 -6.9314 23 6 6.1004 -2.1409 -6.9473 24 6 5.2648 -2.2584 -8.0536 25 6 4.0775 -1.5575 -8.1045 26 6 3.7127 -0.7397 -7.0507 27 6 4.5428 -0.6154 -5.9540 28 6 5.7370 -1.3148 -5.8983 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9562 -0.8901 36 1 6.4286 3.6813 0.5780 37 1 5.1468 2.0348 -1.1624 38 1 3.6120 1.8728 -2.0494 39 1 3.6981 -0.5871 -1.7489 40 1 5.2328 -0.4251 -0.8620 41 1 5.5159 0.8417 -3.3704 42 1 7.1133 -3.2227 -4.3494 43 1 8.3943 -2.0750 -3.8813 44 1 9.0491 -3.2173 -5.9637 45 1 8.7032 -1.5047 -6.3170 46 1 5.5464 -2.9005 -8.8751 47 1 3.4314 -1.6506 -8.9649 48 1 2.7808 -0.1951 -7.0871 49 1 4.2574 0.0269 -5.1340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714659822.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:11 Heat of formation + Delta-G solvation = -60.403856 kcal Electronic energy + Delta-G solvation = -29007.764298 eV Core-core repulsion = 25127.261740 eV Total energy + Delta-G solvation = -3880.502558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.10618 -40.39197 -38.46582 -38.27823 -35.80570 -35.30869 -34.62339 -32.62045 -31.65969 -31.20665 -30.01282 -27.40079 -27.34220 -25.21570 -24.63826 -23.62693 -22.65539 -22.08998 -21.69793 -20.77251 -19.12354 -18.64575 -17.98670 -17.74247 -17.16521 -17.00824 -16.87276 -16.22162 -15.96279 -15.81198 -15.64107 -15.13643 -15.10056 -14.79947 -14.74277 -14.41426 -14.32334 -14.22817 -14.00828 -13.43309 -13.37431 -13.08066 -12.95032 -12.92010 -12.68273 -12.51721 -12.50767 -12.23174 -12.09884 -12.02055 -11.89715 -11.86599 -11.70700 -11.65228 -11.36424 -10.96068 -10.56532 -10.08668 -9.81315 -9.16600 -8.61575 -7.85840 -5.50305 0.26575 0.42426 1.40532 1.45696 1.50938 1.54732 2.08740 2.34741 2.48626 2.77296 3.19754 3.39282 3.54667 3.63166 3.72709 3.87294 4.06949 4.09180 4.19198 4.20070 4.30744 4.34839 4.36803 4.48559 4.50177 4.51680 4.52824 4.63861 4.66281 4.71756 4.84176 4.87952 4.97538 4.99160 5.04566 5.14321 5.20472 5.24740 5.29035 5.37773 5.41421 5.42945 5.55693 5.60081 5.63986 5.74638 5.82054 6.42080 6.42471 6.52448 7.12030 7.18381 7.81008 8.32841 9.08097 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.003311 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.377904 B = 8453.644622 C = 9931.921474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.597 5.597 5 C -0.271 4.271 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.286 1.286 13 C 0.143 3.857 14 C 0.122 3.878 15 N -0.710 5.710 16 C 0.521 3.479 17 O -0.584 6.584 18 C -0.059 4.059 19 H 0.126 0.874 20 C -0.147 4.147 21 C 0.066 3.934 22 O -0.327 6.327 23 C 0.124 3.876 24 C -0.158 4.158 25 C -0.080 4.080 26 C -0.155 4.155 27 C -0.099 4.099 28 C -0.164 4.164 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.411 0.589 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.137 0.863 45 H 0.086 0.914 46 H 0.148 0.852 47 H 0.161 0.839 48 H 0.144 0.856 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.756 -6.466 -18.640 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.401 4.401 6 H 0.068 0.932 7 C -0.223 4.223 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.213 1.213 13 C 0.016 3.984 14 C -0.005 4.005 15 N -0.361 5.361 16 C 0.308 3.692 17 O -0.464 6.464 18 C -0.080 4.080 19 H 0.143 0.857 20 C -0.185 4.185 21 C -0.009 4.009 22 O -0.242 6.242 23 C 0.078 3.922 24 C -0.177 4.177 25 C -0.098 4.098 26 C -0.173 4.173 27 C -0.118 4.118 28 C -0.166 4.166 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.248 0.752 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.155 0.845 45 H 0.104 0.896 46 H 0.165 0.835 47 H 0.178 0.822 48 H 0.162 0.838 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.718 -7.207 -18.323 19.703 hybrid contribution 0.830 0.345 1.295 1.576 sum 1.548 -6.862 -17.028 18.424 Atomic orbital electron populations 1.21651 0.94195 1.01750 1.02069 1.22024 0.96497 0.98814 1.00118 1.21058 0.83328 0.94394 0.99175 1.43847 1.00849 1.85305 1.01711 1.19170 1.06068 1.22999 0.91855 0.93247 1.25687 1.01965 0.94802 0.99873 1.70061 1.25736 1.18241 1.41075 0.85542 0.79517 0.77772 0.79622 1.19987 1.21480 1.21272 1.20954 0.98827 0.92017 0.86605 1.21893 0.94225 1.00966 0.83392 1.46074 1.56809 1.09248 1.24017 1.20818 0.79781 0.83304 0.85345 1.90657 1.58982 1.32637 1.64109 1.20216 0.95378 1.03093 0.89301 0.85658 1.22162 0.98599 0.97848 0.99875 1.23220 0.88541 1.03714 0.85398 1.85957 1.23917 1.54729 1.59558 1.18888 0.87560 0.91912 0.93793 1.20917 0.95665 1.03855 0.97243 1.21334 0.95245 0.94191 0.99035 1.21334 1.00759 1.01196 0.94012 1.21184 0.93286 0.98297 0.98990 1.19449 0.98547 1.03354 0.95220 0.91994 0.92363 0.92539 0.93750 0.94448 0.94254 0.93472 0.93660 0.90654 0.93427 0.93730 0.95290 0.75229 0.91622 0.88055 0.84516 0.89624 0.83455 0.82186 0.83795 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.13 -4.86 6.26 30.59 0.19 -4.67 16 3 C 0.15 5.96 5.71 86.38 0.49 6.45 16 4 N -0.60 -28.76 2.44 -701.98 -1.71 -30.47 16 5 C -0.27 -14.60 9.43 84.03 0.79 -13.81 16 6 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 7 C -0.03 -1.35 4.99 84.86 0.42 -0.92 16 8 N -0.91 -50.16 11.41 21.65 0.25 -49.91 16 9 Si 0.95 44.01 29.61 68.60 2.03 46.04 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 C 0.14 6.26 5.49 86.38 0.47 6.73 16 14 C 0.12 5.00 5.98 86.38 0.52 5.52 16 15 N -0.71 -23.44 4.79 -463.07 -2.22 -25.66 16 16 C 0.52 17.59 5.85 87.66 0.51 18.11 16 17 O -0.58 -25.08 16.04 -3.03 -0.05 -25.13 16 18 C -0.06 -1.48 2.70 -12.25 -0.03 -1.51 16 19 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 20 C -0.15 -3.33 5.34 30.75 0.16 -3.17 16 21 C 0.07 1.11 7.03 72.12 0.51 1.62 16 22 O -0.33 -7.44 10.27 -91.73 -0.94 -8.39 16 23 C 0.12 2.99 6.47 22.52 0.15 3.14 16 24 C -0.16 -3.19 9.94 22.42 0.22 -2.96 16 25 C -0.08 -1.40 10.04 22.22 0.22 -1.18 16 26 C -0.15 -3.12 10.04 22.25 0.22 -2.89 16 27 C -0.10 -2.43 9.10 22.30 0.20 -2.23 16 28 C -0.16 -4.18 5.42 -19.75 -0.11 -4.29 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.65 6.63 -2.39 -0.02 1.64 16 33 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 35 H 0.05 1.77 7.86 -2.39 -0.02 1.75 16 36 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 37 H 0.08 3.72 5.49 -2.39 -0.01 3.71 16 38 H 0.05 1.88 7.84 -2.38 -0.02 1.86 16 39 H 0.04 1.90 6.63 -2.39 -0.02 1.89 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 11.16 8.35 -92.70 -0.77 10.39 16 42 H 0.07 1.88 7.45 -2.38 -0.02 1.87 16 43 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 47 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 48 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 49 H 0.12 2.99 6.64 -2.91 -0.02 2.97 16 Total: -1.00 -69.11 394.18 3.19 -65.92 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.17 Total: 26.79 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.67 Total: 0.81 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -3.68 Total: -106.04 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.99 Total: -33.51 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -69.11 3.19 -65.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714659822.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.517 kcal (2) G-P(sol) polarization free energy of solvation -69.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds