Wall clock time and date at job start Tue Mar 31 2020 16:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 N 1.46496 * 109.47301 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99844 * 89.99621 * 4 3 2 6 6 H 1.08001 * 120.00063 * 217.77653 * 5 4 3 7 7 C 1.38807 * 119.99757 * 37.77913 * 5 4 3 8 8 N 1.31612 * 120.00392 * 20.81587 * 7 5 4 9 9 Si 1.86803 * 119.99633 * 200.81488 * 7 5 4 10 10 H 1.48500 * 109.47267 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46967 * 120.00215 * 9 7 5 12 12 H 1.48504 * 109.47042 * 240.00083 * 9 7 5 13 13 C 1.46500 * 120.00138 * 270.00294 * 4 3 2 14 14 C 1.53001 * 109.47093 * 95.32359 * 13 4 3 15 15 N 1.46502 * 109.46776 * 180.02562 * 14 13 4 16 16 C 1.34776 * 120.00195 * 180.02562 * 15 14 13 17 17 O 1.21286 * 119.99410 * 354.99798 * 16 15 14 18 18 C 1.50697 * 120.00278 * 174.99902 * 16 15 14 19 19 H 1.08996 * 109.43736 * 335.89478 * 18 16 15 20 20 C 1.53078 * 109.43607 * 215.97607 * 18 16 15 21 21 C 1.53411 * 108.29106 * 191.74707 * 20 18 16 22 22 O 1.42834 * 108.37149 * 64.74908 * 21 20 18 23 23 C 1.35850 * 117.85715 * 310.84924 * 22 21 20 24 24 C 1.39147 * 118.49538 * 197.02107 * 23 22 21 25 25 C 1.37970 * 120.21629 * 180.18342 * 24 23 22 26 26 C 1.38291 * 119.95811 * 0.02562 * 25 24 23 27 27 C 1.38103 * 119.97991 * 359.92380 * 26 25 24 28 28 C 1.38369 * 121.80985 * 17.07830 * 23 22 21 29 29 H 1.08998 * 109.47267 * 59.99868 * 1 2 3 30 30 H 1.09005 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47252 * 300.00044 * 1 2 3 32 32 H 1.08994 * 109.47168 * 240.00190 * 2 1 3 33 33 H 1.08994 * 109.47502 * 119.99416 * 2 1 3 34 34 H 1.08998 * 109.47258 * 300.00137 * 3 2 1 35 35 H 1.09003 * 109.47193 * 59.99920 * 3 2 1 36 36 H 0.97004 * 120.00151 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47154 * 215.32244 * 13 4 3 38 38 H 1.08996 * 109.46958 * 335.32286 * 13 4 3 39 39 H 1.08994 * 109.47366 * 299.99555 * 14 13 4 40 40 H 1.08996 * 109.47278 * 60.00123 * 14 13 4 41 41 H 0.97000 * 120.00444 * 359.97438 * 15 14 13 42 42 H 1.08997 * 109.70210 * 311.44904 * 20 18 16 43 43 H 1.09001 * 109.69772 * 72.04795 * 20 18 16 44 44 H 1.08997 * 109.68498 * 184.47070 * 21 20 18 45 45 H 1.09007 * 109.68167 * 304.99289 * 21 20 18 46 46 H 1.08005 * 119.89074 * 0.15641 * 24 23 22 47 47 H 1.07995 * 120.01958 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00767 * 179.89782 * 26 25 24 49 49 H 1.08001 * 119.84242 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1901 1.4425 -1.1851 6 1 5.1004 0.8695 -1.2826 7 6 3.7146 2.1787 -2.2615 8 7 2.8778 3.1743 -2.0596 9 14 4.2625 1.7562 -3.9967 10 1 5.1990 0.6046 -3.9536 11 1 3.0770 1.4005 -4.8173 12 1 4.9475 2.9283 -4.5986 13 6 4.2369 1.4428 1.2696 14 6 4.6078 0.0066 1.6447 15 7 5.3392 0.0068 2.9140 16 6 5.7702 -1.1552 3.4437 17 8 5.4750 -2.2075 2.9179 18 6 6.6188 -1.1468 4.6889 19 1 7.1281 -0.1870 4.7744 20 6 7.6570 -2.2687 4.6054 21 6 8.3034 -2.4303 5.9872 22 8 7.3009 -2.8700 6.9047 23 6 6.1227 -2.1941 6.9293 24 6 5.2862 -2.3581 8.0292 25 6 4.0796 -1.6917 8.0893 26 6 3.6987 -0.8581 7.0537 27 6 4.5269 -0.6923 5.9611 28 6 5.7403 -1.3570 5.8961 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 2.5453 3.6885 -2.8119 37 1 5.1447 2.0370 1.1654 38 1 3.6095 1.8719 2.0509 39 1 3.7000 -0.5876 1.7490 40 1 5.2351 -0.4225 0.8635 41 1 5.5140 0.8433 3.3730 42 1 7.1694 -3.1998 4.3167 43 1 8.4196 -2.0096 3.8710 44 1 9.1026 -3.1697 5.9345 45 1 8.7094 -1.4738 6.3168 46 1 5.5823 -3.0095 8.8382 47 1 3.4331 -1.8209 8.9446 48 1 2.7537 -0.3374 7.0992 49 1 4.2274 -0.0404 5.1537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714659824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:15 Heat of formation + Delta-G solvation = -42.329314 kcal Electronic energy + Delta-G solvation = -28754.369937 eV Core-core repulsion = 24874.651150 eV Total energy + Delta-G solvation = -3879.718787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.20806 -39.22214 -37.69202 -36.53449 -34.46833 -34.35683 -32.42753 -31.34134 -30.84490 -30.40945 -28.28768 -26.34351 -25.56572 -24.08944 -23.48686 -22.69326 -21.07013 -20.84394 -20.14076 -19.71499 -18.15835 -17.10654 -16.90603 -16.67704 -16.25175 -15.74351 -15.16690 -15.01327 -14.76440 -14.38950 -14.14205 -14.04225 -13.84666 -13.82794 -13.45731 -13.30521 -13.08039 -12.78245 -12.63444 -12.52673 -12.12611 -11.71945 -11.66168 -11.34595 -11.30679 -11.16401 -11.09852 -10.88804 -10.84442 -10.81478 -10.62697 -10.28683 -10.00932 -9.86495 -9.76126 -9.49997 -8.98263 -8.72407 -8.51906 -8.35406 -6.64545 -5.84025 -3.44473 1.07541 1.23912 2.71482 3.02977 3.28207 3.32776 3.41738 3.45327 3.62226 4.28242 4.40332 4.43940 4.47322 4.69355 4.87478 4.89387 4.94766 5.03575 5.20068 5.25327 5.26127 5.30837 5.33756 5.49344 5.62695 5.76165 5.79622 5.81811 5.89425 5.90568 5.99795 6.07521 6.20612 6.22493 6.27524 6.34603 6.51370 6.56513 6.60346 6.62812 6.65631 6.83492 6.91057 6.97198 7.20972 7.26417 7.68221 7.71617 7.78803 8.36857 8.47499 9.13793 9.74579 10.31936 11.15806 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.002731 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.373340 B =10248.330403 C =11295.807116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.146 3.854 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.060 0.940 7 C 0.016 3.984 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.140 3.860 14 C 0.094 3.906 15 N -0.723 5.723 16 C 0.520 3.480 17 O -0.535 6.535 18 C -0.064 4.064 19 H 0.101 0.899 20 C -0.148 4.148 21 C 0.064 3.936 22 O -0.316 6.316 23 C 0.140 3.860 24 C -0.151 4.151 25 C -0.085 4.085 26 C -0.149 4.149 27 C -0.080 4.080 28 C -0.148 4.148 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.396 0.604 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.066 0.934 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.126 0.874 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.918 -6.520 19.550 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.393 4.393 6 H 0.078 0.922 7 C -0.185 4.185 8 N -0.527 5.527 9 Si 0.726 3.274 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.216 1.216 13 C 0.012 3.988 14 C -0.031 4.031 15 N -0.374 5.374 16 C 0.305 3.695 17 O -0.411 6.411 18 C -0.085 4.085 19 H 0.119 0.881 20 C -0.185 4.185 21 C -0.011 4.011 22 O -0.230 6.230 23 C 0.095 3.905 24 C -0.170 4.170 25 C -0.103 4.103 26 C -0.167 4.167 27 C -0.098 4.098 28 C -0.150 4.150 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.230 0.770 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.148 0.852 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.692 -7.280 19.093 21.212 hybrid contribution 0.288 0.359 -1.004 1.104 sum 5.980 -6.921 18.089 20.270 Atomic orbital electron populations 1.21697 0.97558 0.99997 1.01021 1.22172 0.93724 1.01574 1.00778 1.21025 0.83123 0.92317 1.01476 1.43670 1.00974 1.85055 1.00156 1.19034 1.08645 1.23091 0.88566 0.92194 1.25176 0.99428 0.94699 0.99194 1.70002 1.34853 1.17771 1.30117 0.86338 0.78224 0.78048 0.84838 1.19990 1.21329 1.21598 1.20961 0.96614 0.91542 0.89728 1.22475 0.95688 1.02093 0.82839 1.46220 1.57608 1.08363 1.25230 1.20138 0.80340 0.84268 0.84777 1.90704 1.57083 1.30998 1.62314 1.20186 0.95570 1.01339 0.91452 0.88134 1.22171 0.98398 1.00072 0.97903 1.22999 0.89194 1.01272 0.87612 1.85986 1.22569 1.54710 1.59725 1.18630 0.86491 0.92054 0.93326 1.20577 0.95295 1.03844 0.97290 1.20958 0.95260 0.95546 0.98568 1.21037 1.00366 1.00845 0.94498 1.21047 0.92669 0.97973 0.98155 1.19374 0.97759 1.02605 0.95222 0.93084 0.94134 0.93685 0.92442 0.93975 0.88734 0.96013 0.93539 0.93217 0.94159 0.91971 0.91698 0.77011 0.88694 0.89227 0.87050 0.91580 0.85170 0.85332 0.85604 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.88 6.26 -26.73 -0.17 -3.05 16 3 C 0.15 3.34 5.33 -4.04 -0.02 3.32 16 4 N -0.58 -13.78 2.43 -173.24 -0.42 -14.20 16 5 C -0.26 -6.99 9.46 -15.06 -0.14 -7.13 16 6 H 0.06 1.60 7.91 -52.49 -0.42 1.19 16 7 C 0.02 0.42 4.97 -17.43 -0.09 0.34 16 8 N -0.89 -24.80 11.45 55.49 0.64 -24.17 16 9 Si 0.90 21.25 29.60 -169.99 -5.03 16.22 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.14 2.71 5.83 -4.04 -0.02 2.69 16 14 C 0.09 1.70 5.97 -4.04 -0.02 1.68 16 15 N -0.72 -10.25 4.86 -60.30 -0.29 -10.55 16 16 C 0.52 7.82 5.78 -10.99 -0.06 7.76 16 17 O -0.53 -10.41 16.08 5.55 0.09 -10.32 16 18 C -0.06 -0.73 2.70 -92.85 -0.25 -0.98 16 19 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 20 C -0.15 -1.53 5.35 -26.48 -0.14 -1.67 16 21 C 0.06 0.54 7.03 37.37 0.26 0.80 16 22 O -0.32 -3.57 10.27 -19.27 -0.20 -3.77 16 23 C 0.14 1.67 6.47 -39.20 -0.25 1.42 16 24 C -0.15 -1.59 9.94 -39.34 -0.39 -1.98 16 25 C -0.09 -0.81 10.04 -39.66 -0.40 -1.21 16 26 C -0.15 -1.55 10.04 -39.61 -0.40 -1.94 16 27 C -0.08 -0.94 9.10 -39.53 -0.36 -1.30 16 28 C -0.15 -1.80 5.43 -104.44 -0.57 -2.36 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.04 0.83 6.64 -51.93 -0.34 0.49 16 34 H 0.09 2.46 5.51 -51.93 -0.29 2.17 16 35 H 0.02 0.47 7.86 -51.93 -0.41 0.06 16 36 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 38 H 0.04 0.72 7.83 -51.93 -0.41 0.31 16 39 H 0.06 1.22 6.64 -51.93 -0.34 0.88 16 40 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.40 4.41 8.44 -40.82 -0.34 4.06 16 42 H 0.09 1.22 7.46 -51.93 -0.39 0.84 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 46 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.13 1.45 6.79 -52.49 -0.36 1.09 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -31.91 394.53 -9.85 -41.77 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.92 Total: 4.80 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.66 Total: -5.73 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.08 Total: -48.92 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.11 Total: -14.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.91 -9.85 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714659824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.562 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds