Wall clock time and date at job start Tue Mar 31 2020 16:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 N 1.46496 * 109.47301 * 179.97438 * 3 2 1 5 5 C 1.36941 * 119.99844 * 89.99621 * 4 3 2 6 6 H 1.08001 * 120.00063 * 217.77653 * 5 4 3 7 7 C 1.38807 * 119.99757 * 37.77913 * 5 4 3 8 8 N 1.31612 * 120.00392 * 20.81587 * 7 5 4 9 9 Si 1.86803 * 119.99633 * 200.81488 * 7 5 4 10 10 H 1.48500 * 109.47267 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46967 * 120.00215 * 9 7 5 12 12 H 1.48504 * 109.47042 * 240.00083 * 9 7 5 13 13 C 1.46500 * 120.00138 * 270.00294 * 4 3 2 14 14 C 1.53001 * 109.47093 * 95.32359 * 13 4 3 15 15 N 1.46502 * 109.46776 * 180.02562 * 14 13 4 16 16 C 1.34776 * 120.00195 * 180.02562 * 15 14 13 17 17 O 1.21286 * 119.99410 * 354.99798 * 16 15 14 18 18 C 1.50697 * 120.00278 * 174.99902 * 16 15 14 19 19 H 1.08996 * 109.43736 * 335.89478 * 18 16 15 20 20 C 1.53078 * 109.43607 * 215.97607 * 18 16 15 21 21 C 1.53411 * 108.29106 * 191.74707 * 20 18 16 22 22 O 1.42834 * 108.37149 * 64.74908 * 21 20 18 23 23 C 1.35850 * 117.85715 * 310.84924 * 22 21 20 24 24 C 1.39147 * 118.49538 * 197.02107 * 23 22 21 25 25 C 1.37970 * 120.21629 * 180.18342 * 24 23 22 26 26 C 1.38291 * 119.95811 * 0.02562 * 25 24 23 27 27 C 1.38103 * 119.97991 * 359.92380 * 26 25 24 28 28 C 1.38369 * 121.80985 * 17.07830 * 23 22 21 29 29 H 1.08998 * 109.47267 * 59.99868 * 1 2 3 30 30 H 1.09005 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47252 * 300.00044 * 1 2 3 32 32 H 1.08994 * 109.47168 * 240.00190 * 2 1 3 33 33 H 1.08994 * 109.47502 * 119.99416 * 2 1 3 34 34 H 1.08998 * 109.47258 * 300.00137 * 3 2 1 35 35 H 1.09003 * 109.47193 * 59.99920 * 3 2 1 36 36 H 0.97004 * 120.00151 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47154 * 215.32244 * 13 4 3 38 38 H 1.08996 * 109.46958 * 335.32286 * 13 4 3 39 39 H 1.08994 * 109.47366 * 299.99555 * 14 13 4 40 40 H 1.08996 * 109.47278 * 60.00123 * 14 13 4 41 41 H 0.97000 * 120.00444 * 359.97438 * 15 14 13 42 42 H 1.08997 * 109.70210 * 311.44904 * 20 18 16 43 43 H 1.09001 * 109.69772 * 72.04795 * 20 18 16 44 44 H 1.08997 * 109.68498 * 184.47070 * 21 20 18 45 45 H 1.09007 * 109.68167 * 304.99289 * 21 20 18 46 46 H 1.08005 * 119.89074 * 0.15641 * 24 23 22 47 47 H 1.07995 * 120.01958 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00767 * 179.89782 * 26 25 24 49 49 H 1.08001 * 119.84242 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1901 1.4425 -1.1851 6 1 5.1004 0.8695 -1.2826 7 6 3.7146 2.1787 -2.2615 8 7 2.8778 3.1743 -2.0596 9 14 4.2625 1.7562 -3.9967 10 1 5.1990 0.6046 -3.9536 11 1 3.0770 1.4005 -4.8173 12 1 4.9475 2.9283 -4.5986 13 6 4.2369 1.4428 1.2696 14 6 4.6078 0.0066 1.6447 15 7 5.3392 0.0068 2.9140 16 6 5.7702 -1.1552 3.4437 17 8 5.4750 -2.2075 2.9179 18 6 6.6188 -1.1468 4.6889 19 1 7.1281 -0.1870 4.7744 20 6 7.6570 -2.2687 4.6054 21 6 8.3034 -2.4303 5.9872 22 8 7.3009 -2.8700 6.9047 23 6 6.1227 -2.1941 6.9293 24 6 5.2862 -2.3581 8.0292 25 6 4.0796 -1.6917 8.0893 26 6 3.6987 -0.8581 7.0537 27 6 4.5269 -0.6923 5.9611 28 6 5.7403 -1.3570 5.8961 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 2.5453 3.6885 -2.8119 37 1 5.1447 2.0370 1.1654 38 1 3.6095 1.8719 2.0509 39 1 3.7000 -0.5876 1.7490 40 1 5.2351 -0.4225 0.8635 41 1 5.5140 0.8433 3.3730 42 1 7.1694 -3.1998 4.3167 43 1 8.4196 -2.0096 3.8710 44 1 9.1026 -3.1697 5.9345 45 1 8.7094 -1.4738 6.3168 46 1 5.5823 -3.0095 8.8382 47 1 3.4331 -1.8209 8.9446 48 1 2.7537 -0.3374 7.0992 49 1 4.2274 -0.0404 5.1537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714659824.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:14 Heat of formation + Delta-G solvation = -60.723727 kcal Electronic energy + Delta-G solvation = -28755.167578 eV Core-core repulsion = 24874.651150 eV Total energy + Delta-G solvation = -3880.516428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.09823 -40.39511 -38.45783 -38.27104 -35.92223 -35.30574 -34.19578 -33.07546 -31.64449 -31.20297 -29.80550 -27.41017 -27.35479 -25.26953 -24.64656 -23.61869 -22.59722 -22.12865 -21.69606 -20.74297 -19.06958 -18.64989 -18.06820 -17.73657 -17.23328 -17.05639 -16.62851 -16.30915 -15.93748 -15.80629 -15.57134 -15.12986 -15.10087 -14.82930 -14.76580 -14.43302 -14.25296 -14.21475 -14.05684 -13.42206 -13.29582 -13.20659 -12.94481 -12.87813 -12.74388 -12.53421 -12.48527 -12.32419 -12.08132 -12.04413 -11.85085 -11.77230 -11.64702 -11.58356 -11.32950 -10.97917 -10.54052 -10.10390 -9.80945 -9.15953 -8.60889 -7.85629 -5.49947 0.26996 0.42933 1.42160 1.46732 1.51436 1.55892 2.06833 2.35487 2.50145 2.77708 3.21258 3.40386 3.56016 3.64428 3.73260 3.88200 4.08034 4.10764 4.18828 4.20127 4.26973 4.34086 4.37180 4.49508 4.50620 4.51230 4.52508 4.63787 4.65250 4.69936 4.87969 4.89087 4.99587 5.04531 5.06079 5.09725 5.17885 5.25911 5.29252 5.34839 5.42828 5.44077 5.54917 5.56205 5.66583 5.82363 5.86445 6.43608 6.45394 6.50997 7.14677 7.18994 7.82136 8.33622 9.10182 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016424 B = 0.002731 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.373340 B =10248.330403 C =11295.807116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C 0.148 3.852 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.051 0.949 7 C -0.028 4.028 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 C 0.144 3.856 14 C 0.118 3.882 15 N -0.710 5.710 16 C 0.521 3.479 17 O -0.583 6.583 18 C -0.057 4.057 19 H 0.131 0.869 20 C -0.147 4.147 21 C 0.064 3.936 22 O -0.329 6.329 23 C 0.124 3.876 24 C -0.160 4.160 25 C -0.082 4.082 26 C -0.157 4.157 27 C -0.098 4.098 28 C -0.165 4.165 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.036 0.964 41 H 0.414 0.586 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.136 0.864 45 H 0.087 0.913 46 H 0.146 0.854 47 H 0.158 0.842 48 H 0.143 0.857 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -6.554 21.567 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.022 3.978 4 N -0.317 5.317 5 C -0.400 4.400 6 H 0.069 0.931 7 C -0.226 4.226 8 N -0.555 5.555 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.214 1.214 13 C 0.017 3.983 14 C -0.009 4.009 15 N -0.362 5.362 16 C 0.308 3.692 17 O -0.463 6.463 18 C -0.078 4.078 19 H 0.149 0.851 20 C -0.185 4.185 21 C -0.010 4.010 22 O -0.243 6.243 23 C 0.079 3.921 24 C -0.178 4.178 25 C -0.099 4.099 26 C -0.175 4.175 27 C -0.116 4.116 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.123 0.877 44 H 0.153 0.847 45 H 0.105 0.895 46 H 0.164 0.836 47 H 0.176 0.824 48 H 0.161 0.839 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.114 -7.295 21.149 23.192 hybrid contribution 0.163 0.342 -1.547 1.592 sum 6.277 -6.953 19.602 21.725 Atomic orbital electron populations 1.21636 0.94859 1.01500 1.01590 1.22007 0.96060 0.99472 0.99668 1.20949 0.82843 0.93580 1.00405 1.43868 1.01572 1.85348 1.00900 1.19163 1.08410 1.22404 0.90068 0.93146 1.25768 0.99986 0.94819 1.02049 1.70101 1.36066 1.18636 1.30691 0.85476 0.77657 0.77727 0.81162 1.19753 1.21495 1.21351 1.20988 0.96547 0.92194 0.88547 1.21900 0.94710 1.00498 0.83780 1.46003 1.56853 1.09400 1.23924 1.20810 0.79741 0.83309 0.85329 1.90683 1.58903 1.32750 1.63977 1.20216 0.95164 1.03341 0.89073 0.85130 1.22173 0.98365 0.98163 0.99813 1.23237 0.88805 1.03249 0.85707 1.85964 1.22833 1.55122 1.60407 1.18883 0.87147 0.92190 0.93878 1.20913 0.95467 1.04053 0.97408 1.21324 0.95144 0.94369 0.99090 1.21334 1.00838 1.01010 0.94276 1.21180 0.93114 0.98511 0.98823 1.19472 0.98261 1.03375 0.95552 0.93611 0.92165 0.92020 0.94944 0.93605 0.91812 0.94932 0.93780 0.93237 0.92024 0.93634 0.94576 0.74865 0.91837 0.87664 0.84664 0.89457 0.83619 0.82392 0.83910 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.91 71.98 0.71 -3.81 16 2 C -0.13 -5.35 6.26 30.60 0.19 -5.16 16 3 C 0.15 6.79 5.33 86.38 0.46 7.25 16 4 N -0.60 -28.68 2.43 -702.00 -1.71 -30.38 16 5 C -0.27 -14.55 9.46 84.03 0.79 -13.75 16 6 H 0.05 2.76 7.91 -2.91 -0.02 2.74 16 7 C -0.03 -1.53 4.97 84.86 0.42 -1.11 16 8 N -0.91 -51.79 11.45 21.65 0.25 -51.54 16 9 Si 0.95 44.28 29.60 68.60 2.03 46.31 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 12 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.14 5.55 5.83 86.38 0.50 6.05 16 14 C 0.12 4.28 5.97 86.38 0.52 4.80 16 15 N -0.71 -19.70 4.86 -463.06 -2.25 -21.95 16 16 C 0.52 15.58 5.78 87.66 0.51 16.09 16 17 O -0.58 -23.32 16.08 -3.05 -0.05 -23.37 16 18 C -0.06 -1.23 2.70 -12.24 -0.03 -1.27 16 19 H 0.13 1.98 8.12 -2.39 -0.02 1.96 16 20 C -0.15 -2.91 5.35 30.76 0.16 -2.74 16 21 C 0.06 0.95 7.03 72.12 0.51 1.45 16 22 O -0.33 -6.96 10.27 -91.86 -0.94 -7.90 16 23 C 0.12 2.81 6.47 22.52 0.15 2.95 16 24 C -0.16 -3.06 9.94 22.42 0.22 -2.83 16 25 C -0.08 -1.36 10.04 22.22 0.22 -1.13 16 26 C -0.16 -2.96 10.04 22.25 0.22 -2.73 16 27 C -0.10 -2.19 9.10 22.30 0.20 -1.99 16 28 C -0.17 -3.83 5.43 -19.75 -0.11 -3.93 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.80 6.64 -2.39 -0.02 1.78 16 34 H 0.06 3.38 5.51 -2.39 -0.01 3.37 16 35 H 0.03 1.39 7.86 -2.39 -0.02 1.37 16 36 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 38 H 0.06 2.11 7.83 -2.39 -0.02 2.09 16 39 H 0.05 1.82 6.64 -2.39 -0.02 1.80 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.41 8.56 8.44 -92.71 -0.78 7.77 16 42 H 0.06 1.67 7.46 -2.39 -0.02 1.65 16 43 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 47 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 48 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 49 H 0.12 2.71 6.79 -2.91 -0.02 2.69 16 Total: -1.00 -70.85 394.53 3.14 -67.70 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.16 Total: 23.00 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.66 Total: -1.86 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -3.71 Total: -103.88 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.99 Total: -31.27 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.85 3.14 -67.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714659824.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.979 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds