Wall clock time and date at job start Tue Mar 31 2020 16:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47464 * 2 1 4 4 H 1.09000 * 109.47042 * 54.99672 * 3 2 1 5 5 O 1.42902 * 109.46497 * 294.99605 * 3 2 1 6 6 C 1.35905 * 116.99678 * 99.57801 * 5 3 2 7 7 C 1.38752 * 120.05595 * 354.32275 * 6 5 3 8 8 C 1.38127 * 119.94306 * 180.27728 * 7 6 5 9 9 C 1.38288 * 120.05501 * 359.77403 * 8 7 6 10 10 C 1.38245 * 120.11052 * 359.97438 * 9 8 7 11 11 C 1.38167 * 120.05773 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02664 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47232 * 175.00065 * 3 2 1 14 14 O 1.21285 * 120.00110 * 119.99458 * 13 3 2 15 15 N 1.34780 * 120.00046 * 299.99673 * 13 3 2 16 16 C 1.46499 * 119.99900 * 180.02562 * 15 13 3 17 17 C 1.50703 * 109.46879 * 179.97438 * 16 15 13 18 18 C 1.30994 * 120.00110 * 124.99931 * 17 16 15 19 19 C 1.50703 * 120.00110 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47199 * 124.99900 * 19 18 17 21 21 C 1.36941 * 119.99899 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00053 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99954 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00019 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47229 * 89.99630 * 25 23 21 27 27 H 1.48503 * 109.47049 * 210.00037 * 25 23 21 28 28 H 1.48499 * 109.46717 * 329.99530 * 25 23 21 29 29 H 1.09003 * 109.47010 * 60.00007 * 1 2 3 30 30 H 1.08998 * 109.47550 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47088 * 300.00558 * 1 2 3 32 32 H 1.08995 * 109.47576 * 239.99457 * 2 1 3 33 33 H 1.09002 * 109.47396 * 119.99616 * 2 1 3 34 34 H 1.08001 * 120.03278 * 0.02669 * 7 6 5 35 35 H 1.08001 * 119.97030 * 179.75107 * 8 7 6 36 36 H 1.07996 * 119.94483 * 180.02562 * 9 8 7 37 37 H 1.07997 * 119.96976 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46674 * 90.00281 * 12 11 10 39 39 H 1.08998 * 109.47372 * 330.00425 * 12 11 10 40 40 H 1.08998 * 109.46946 * 210.00370 * 12 11 10 41 41 H 0.96999 * 119.99715 * 359.97438 * 15 13 3 42 42 H 1.09001 * 109.46776 * 299.99497 * 16 15 13 43 43 H 1.08998 * 109.47683 * 59.99720 * 16 15 13 44 44 H 1.07997 * 120.00073 * 304.99845 * 17 16 15 45 45 H 1.08006 * 120.00129 * 359.97438 * 18 17 16 46 46 H 1.08996 * 109.46959 * 244.99638 * 19 18 17 47 47 H 1.08999 * 109.47176 * 5.00104 * 19 18 17 48 48 H 0.96999 * 119.99995 * 359.97438 * 20 19 18 49 49 H 0.96992 * 119.99900 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6621 2.0813 -1.2212 6 6 0.5686 2.8875 -1.1829 7 6 -0.1948 2.9687 -0.0272 8 6 -1.3089 3.7845 0.0073 9 6 -1.6610 4.5234 -1.1074 10 6 -0.8990 4.4482 -2.2584 11 6 0.2164 3.6337 -2.2979 12 6 1.0462 3.5517 -3.5532 13 6 3.5419 1.4443 0.1238 14 8 4.2217 1.9434 -0.7478 15 7 4.1298 0.8911 1.2032 16 6 5.5898 0.8933 1.3238 17 6 5.9884 0.2200 2.6118 18 6 6.8261 -0.7868 2.5926 19 6 7.2243 -1.4605 3.8805 20 7 6.9507 -2.8966 3.7854 21 6 7.2330 -3.7189 4.8434 22 1 7.6569 -3.3087 5.7480 23 6 6.9732 -5.0795 4.7535 24 7 6.4551 -5.5792 3.6514 25 14 7.3576 -6.2012 6.1969 26 1 6.1722 -6.2862 7.0872 27 1 7.6972 -7.5565 5.6938 28 1 8.5093 -5.6525 6.9570 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0795 2.3916 0.8435 35 1 -1.9058 3.8450 0.9053 36 1 -2.5322 5.1610 -1.0784 37 1 -1.1758 5.0265 -3.1274 38 1 1.8273 4.3114 -3.5226 39 1 0.4093 3.7203 -4.4215 40 1 1.5023 2.5642 -3.6234 41 1 3.5861 0.4922 1.9004 42 1 6.0246 0.3544 0.4820 43 1 5.9529 1.9210 1.3239 44 1 5.5834 0.5677 3.5506 45 1 7.2308 -1.1348 1.6536 46 1 8.2883 -1.3044 4.0583 47 1 6.6519 -1.0354 4.7049 48 1 6.5689 -3.2648 2.9733 49 1 6.2733 -6.5299 3.5888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716349591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:05 Heat of formation + Delta-G solvation = -24.939314 kcal Electronic energy + Delta-G solvation = -27401.345393 eV Core-core repulsion = 23522.380693 eV Total energy + Delta-G solvation = -3878.964700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09388 -39.60556 -37.72988 -36.28843 -34.85975 -34.21544 -32.94460 -32.61756 -30.70889 -30.46778 -28.43769 -27.06958 -26.55594 -24.16539 -23.41734 -22.24754 -21.87720 -21.73424 -20.49522 -19.46524 -18.61510 -17.66904 -17.13873 -16.32224 -16.15506 -15.97271 -15.60010 -15.13865 -14.98308 -14.76645 -14.28528 -14.16589 -13.97136 -13.64945 -13.58109 -13.42598 -13.28557 -12.98400 -12.86999 -12.58631 -12.51540 -12.30684 -12.15870 -12.05054 -11.88886 -11.68377 -11.48341 -11.24954 -11.07358 -10.86251 -10.82980 -10.66999 -10.12086 -9.96986 -9.84067 -9.34581 -9.12317 -9.05107 -8.77522 -8.37429 -6.99263 -5.82016 -3.11806 1.00183 1.12582 2.09573 2.38825 2.63870 3.40062 3.42178 3.45183 3.45735 3.47251 4.24331 4.34781 4.42900 4.49461 4.55619 4.57710 4.76754 4.80365 4.90443 4.98782 5.04252 5.09821 5.19775 5.26903 5.33204 5.38144 5.50749 5.51705 5.55154 5.57221 5.61839 5.71551 5.74139 5.89470 5.93868 5.98138 6.02560 6.08298 6.16128 6.20868 6.23238 6.41710 6.47048 6.52334 6.84195 7.06187 7.08682 7.32910 7.64384 8.01297 8.36247 9.47615 10.03479 10.38724 11.40615 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.001855 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.676891 B =15089.700960 C =15721.333599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.065 3.935 4 H 0.104 0.896 5 O -0.278 6.278 6 C 0.131 3.869 7 C -0.209 4.209 8 C -0.086 4.086 9 C -0.156 4.156 10 C -0.085 4.085 11 C -0.114 4.114 12 C -0.107 4.107 13 C 0.511 3.489 14 O -0.521 6.521 15 N -0.719 5.719 16 C 0.157 3.843 17 C -0.204 4.204 18 C -0.104 4.104 19 C 0.172 3.828 20 N -0.729 5.729 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.404 0.596 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.110 0.890 46 H 0.032 0.968 47 H 0.026 0.974 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.068 20.715 -10.143 28.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.005 3.995 4 H 0.121 0.879 5 O -0.190 6.190 6 C 0.086 3.914 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.174 4.174 10 C -0.103 4.103 11 C -0.115 4.115 12 C -0.163 4.163 13 C 0.296 3.704 14 O -0.396 6.396 15 N -0.372 5.372 16 C 0.034 3.966 17 C -0.223 4.223 18 C -0.123 4.123 19 C 0.045 3.955 20 N -0.374 5.374 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.238 0.762 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.219 0.781 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.355 20.966 -10.800 28.700 hybrid contribution -0.274 -1.047 1.188 1.607 sum -16.629 19.919 -9.612 27.671 Atomic orbital electron populations 1.21922 0.94332 1.02793 1.02244 1.22010 0.97522 0.93558 1.04647 1.22408 0.92996 0.95659 0.88431 0.87885 1.86200 1.42573 1.58105 1.32146 1.18882 0.87208 0.91057 0.94254 1.21360 0.98594 1.04630 0.98191 1.20915 0.95842 0.95275 0.98391 1.21040 1.01057 1.01740 0.93604 1.20899 0.93699 0.97347 0.98330 1.19312 0.98296 0.98563 0.95321 1.20626 0.98838 1.03432 0.93435 1.20257 0.89280 0.78651 0.82248 1.90740 1.64960 1.44284 1.39572 1.45970 1.08341 1.60089 1.22813 1.20345 0.78972 1.00839 0.96400 1.22669 1.02337 0.99910 0.97374 1.23357 0.95291 0.93394 1.00264 1.19832 0.97735 0.86108 0.91833 1.42292 1.76632 1.00723 1.17737 1.19242 1.35002 0.89012 0.94139 0.91058 1.24773 1.01728 0.96898 0.97555 1.69667 1.49524 1.12582 1.26286 0.86157 0.77909 0.80306 0.81613 1.21664 1.21697 1.20696 0.92053 0.91613 0.92308 0.89828 0.89360 0.84998 0.85834 0.85985 0.85461 0.91238 0.91804 0.90887 0.76151 0.90994 0.90963 0.86690 0.87210 0.95085 0.95652 0.78136 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.49 37.16 0.32 -0.88 16 2 C -0.14 -1.21 5.58 -26.73 -0.15 -1.36 16 3 C 0.07 0.66 2.54 -27.88 -0.07 0.58 16 4 H 0.10 0.82 5.42 -51.93 -0.28 0.54 16 5 O -0.28 -3.35 8.15 -39.35 -0.32 -3.67 16 6 C 0.13 1.40 5.63 -39.22 -0.22 1.18 16 7 C -0.21 -1.83 7.38 -39.43 -0.29 -2.12 16 8 C -0.09 -0.66 10.04 -39.60 -0.40 -1.06 16 9 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 10 C -0.08 -0.69 9.70 -39.60 -0.38 -1.07 16 11 C -0.11 -1.14 5.89 -104.47 -0.62 -1.75 16 12 C -0.11 -0.97 9.80 36.01 0.35 -0.62 16 13 C 0.51 6.50 7.23 -10.99 -0.08 6.42 16 14 O -0.52 -8.80 16.50 -14.36 -0.24 -9.03 16 15 N -0.72 -7.91 5.41 -61.47 -0.33 -8.24 16 16 C 0.16 1.91 6.11 -5.19 -0.03 1.88 16 17 C -0.20 -2.63 9.24 -36.02 -0.33 -2.96 16 18 C -0.10 -1.62 9.24 -36.02 -0.33 -1.95 16 19 C 0.17 3.35 6.70 -5.19 -0.03 3.32 16 20 N -0.73 -18.26 5.59 -61.09 -0.34 -18.60 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.37 6.74 -51.92 -0.35 0.02 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.67 7.43 -51.93 -0.39 0.28 16 34 H 0.13 0.94 4.29 -52.49 -0.23 0.72 16 35 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 40 H 0.07 0.76 7.52 -51.93 -0.39 0.37 16 41 H 0.40 3.54 7.82 -40.82 -0.32 3.23 16 42 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.12 1.38 7.84 -52.49 -0.41 0.97 16 45 H 0.11 1.70 7.84 -52.48 -0.41 1.29 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 48 H 0.39 10.14 7.66 -40.82 -0.31 9.83 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -33.73 402.49 -9.97 -43.70 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.59 Total: 9.23 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.92 Total: -9.33 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.05 Total: -54.05 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.56 Total: -12.71 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.73 -9.97 -43.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716349591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.760 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds