Wall clock time and date at job start Tue Mar 31 2020 16:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47464 * 2 1 4 4 H 1.09000 * 109.47042 * 54.99672 * 3 2 1 5 5 O 1.42902 * 109.46497 * 294.99605 * 3 2 1 6 6 C 1.35905 * 116.99678 * 99.57801 * 5 3 2 7 7 C 1.38752 * 120.05595 * 354.32275 * 6 5 3 8 8 C 1.38127 * 119.94306 * 180.27728 * 7 6 5 9 9 C 1.38288 * 120.05501 * 359.77403 * 8 7 6 10 10 C 1.38245 * 120.11052 * 359.97438 * 9 8 7 11 11 C 1.38167 * 120.05773 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.02664 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47232 * 175.00065 * 3 2 1 14 14 O 1.21285 * 120.00110 * 119.99458 * 13 3 2 15 15 N 1.34780 * 120.00046 * 299.99673 * 13 3 2 16 16 C 1.46499 * 119.99900 * 180.02562 * 15 13 3 17 17 C 1.50703 * 109.46879 * 179.97438 * 16 15 13 18 18 C 1.30994 * 120.00110 * 124.99931 * 17 16 15 19 19 C 1.50703 * 120.00110 * 180.02562 * 18 17 16 20 20 N 1.46500 * 109.47199 * 124.99900 * 19 18 17 21 21 C 1.36941 * 119.99899 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00053 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99954 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00019 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00136 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47229 * 89.99630 * 25 23 21 27 27 H 1.48503 * 109.47049 * 210.00037 * 25 23 21 28 28 H 1.48499 * 109.46717 * 329.99530 * 25 23 21 29 29 H 1.09003 * 109.47010 * 60.00007 * 1 2 3 30 30 H 1.08998 * 109.47550 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.47088 * 300.00558 * 1 2 3 32 32 H 1.08995 * 109.47576 * 239.99457 * 2 1 3 33 33 H 1.09002 * 109.47396 * 119.99616 * 2 1 3 34 34 H 1.08001 * 120.03278 * 0.02669 * 7 6 5 35 35 H 1.08001 * 119.97030 * 179.75107 * 8 7 6 36 36 H 1.07996 * 119.94483 * 180.02562 * 9 8 7 37 37 H 1.07997 * 119.96976 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46674 * 90.00281 * 12 11 10 39 39 H 1.08998 * 109.47372 * 330.00425 * 12 11 10 40 40 H 1.08998 * 109.46946 * 210.00370 * 12 11 10 41 41 H 0.96999 * 119.99715 * 359.97438 * 15 13 3 42 42 H 1.09001 * 109.46776 * 299.99497 * 16 15 13 43 43 H 1.08998 * 109.47683 * 59.99720 * 16 15 13 44 44 H 1.07997 * 120.00073 * 304.99845 * 17 16 15 45 45 H 1.08006 * 120.00129 * 359.97438 * 18 17 16 46 46 H 1.08996 * 109.46959 * 244.99638 * 19 18 17 47 47 H 1.08999 * 109.47176 * 5.00104 * 19 18 17 48 48 H 0.96999 * 119.99995 * 359.97438 * 20 19 18 49 49 H 0.96992 * 119.99900 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6621 2.0813 -1.2212 6 6 0.5686 2.8875 -1.1829 7 6 -0.1948 2.9687 -0.0272 8 6 -1.3089 3.7845 0.0073 9 6 -1.6610 4.5234 -1.1074 10 6 -0.8990 4.4482 -2.2584 11 6 0.2164 3.6337 -2.2979 12 6 1.0462 3.5517 -3.5532 13 6 3.5419 1.4443 0.1238 14 8 4.2217 1.9434 -0.7478 15 7 4.1298 0.8911 1.2032 16 6 5.5898 0.8933 1.3238 17 6 5.9884 0.2200 2.6118 18 6 6.8261 -0.7868 2.5926 19 6 7.2243 -1.4605 3.8805 20 7 6.9507 -2.8966 3.7854 21 6 7.2330 -3.7189 4.8434 22 1 7.6569 -3.3087 5.7480 23 6 6.9732 -5.0795 4.7535 24 7 6.4551 -5.5792 3.6514 25 14 7.3576 -6.2012 6.1969 26 1 6.1722 -6.2862 7.0872 27 1 7.6972 -7.5565 5.6938 28 1 8.5093 -5.6525 6.9570 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.0795 2.3916 0.8435 35 1 -1.9058 3.8450 0.9053 36 1 -2.5322 5.1610 -1.0784 37 1 -1.1758 5.0265 -3.1274 38 1 1.8273 4.3114 -3.5226 39 1 0.4093 3.7203 -4.4215 40 1 1.5023 2.5642 -3.6234 41 1 3.5861 0.4922 1.9004 42 1 6.0246 0.3544 0.4820 43 1 5.9529 1.9210 1.3239 44 1 5.5834 0.5677 3.5506 45 1 7.2308 -1.1348 1.6536 46 1 8.2883 -1.3044 4.0583 47 1 6.6519 -1.0354 4.7049 48 1 6.5689 -3.2648 2.9733 49 1 6.2733 -6.5299 3.5888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716349591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:04 Heat of formation + Delta-G solvation = -45.011550 kcal Electronic energy + Delta-G solvation = -27402.215791 eV Core-core repulsion = 23522.380693 eV Total energy + Delta-G solvation = -3879.835097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88340 -40.50659 -38.48182 -37.64062 -36.28830 -35.10833 -34.27054 -33.41458 -32.39670 -31.15641 -29.48636 -28.03803 -27.52226 -25.78234 -24.09850 -23.70539 -22.73867 -22.51880 -21.45351 -20.64220 -19.32721 -19.13224 -18.56328 -17.25206 -16.93638 -16.82086 -16.60401 -16.33971 -16.11337 -15.79939 -15.51675 -15.21202 -15.06746 -14.85888 -14.81526 -14.50091 -14.20056 -14.03245 -13.65915 -13.51839 -13.39469 -13.28096 -13.18726 -13.02951 -12.88313 -12.79097 -12.74711 -12.30750 -12.19818 -12.10902 -12.00063 -11.93152 -11.79207 -11.49612 -11.07906 -10.94047 -10.41717 -10.02837 -9.73831 -9.06037 -9.01336 -7.96249 -5.26049 0.38805 0.48173 0.98868 1.38728 1.48537 1.50046 1.58701 1.75578 2.56474 2.57970 2.82260 3.37659 3.47075 3.59079 3.68556 3.71523 3.87653 3.95104 4.08005 4.14242 4.23323 4.23449 4.35772 4.42726 4.44793 4.46429 4.64315 4.65194 4.69936 4.70543 4.76012 4.77636 4.92485 4.97996 4.98916 5.00563 5.05311 5.22607 5.28333 5.30419 5.41672 5.47798 5.54012 5.62181 5.64776 5.82175 5.86644 6.25877 6.31367 6.47012 7.05675 7.32077 8.06270 8.30012 9.27126 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.001855 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.676891 B =15089.700960 C =15721.333599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.070 3.930 4 H 0.129 0.871 5 O -0.304 6.304 6 C 0.106 3.894 7 C -0.213 4.213 8 C -0.089 4.089 9 C -0.157 4.157 10 C -0.089 4.089 11 C -0.139 4.139 12 C -0.103 4.103 13 C 0.510 3.490 14 O -0.569 6.569 15 N -0.707 5.707 16 C 0.158 3.842 17 C -0.160 4.160 18 C -0.130 4.130 19 C 0.173 3.827 20 N -0.744 5.744 21 C -0.248 4.248 22 H 0.079 0.921 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.976 3.024 26 H -0.285 1.285 27 H -0.296 1.296 28 H -0.269 1.269 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.417 0.583 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.106 0.894 46 H 0.030 0.970 47 H 0.035 0.965 48 H 0.374 0.626 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.858 22.085 -8.403 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.010 3.990 4 H 0.146 0.854 5 O -0.217 6.217 6 C 0.061 3.939 7 C -0.231 4.231 8 C -0.107 4.107 9 C -0.175 4.175 10 C -0.106 4.106 11 C -0.140 4.140 12 C -0.160 4.160 13 C 0.295 3.705 14 O -0.447 6.447 15 N -0.360 5.360 16 C 0.035 3.965 17 C -0.180 4.180 18 C -0.150 4.150 19 C 0.047 3.953 20 N -0.387 5.387 21 C -0.380 4.380 22 H 0.096 0.904 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.223 1.223 28 H -0.194 1.194 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.152 0.848 45 H 0.124 0.876 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.206 0.794 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.149 22.369 -9.015 30.183 hybrid contribution 0.239 -1.317 0.624 1.477 sum -17.911 21.051 -8.391 28.885 Atomic orbital electron populations 1.21884 0.93224 1.03163 1.02485 1.22007 0.98419 0.92557 1.04381 1.22465 0.90927 0.96644 0.88963 0.85404 1.86169 1.43571 1.58800 1.33122 1.19160 0.87502 0.91765 0.95433 1.21550 0.98705 1.04959 0.97903 1.21286 0.95501 0.94470 0.99434 1.21412 1.01442 1.01517 0.93131 1.21184 0.93003 0.96927 0.99528 1.19581 0.99345 0.99587 0.95462 1.20579 0.99000 1.01948 0.94462 1.20793 0.90427 0.77608 0.81624 1.90716 1.66216 1.46527 1.41289 1.45833 1.07939 1.59442 1.22814 1.20263 0.79743 1.00976 0.95532 1.22741 0.99415 0.97530 0.98271 1.23016 0.98113 0.95282 0.98549 1.19916 0.97753 0.83533 0.94069 1.42527 1.76506 1.02936 1.16705 1.19672 1.33748 0.89683 0.94875 0.90358 1.25617 1.02501 0.98525 1.00215 1.69824 1.51323 1.12480 1.28351 0.85104 0.78030 0.77839 0.78561 1.21146 1.22296 1.19385 0.93355 0.91159 0.90470 0.91764 0.87922 0.83622 0.83319 0.83511 0.83513 0.91866 0.89844 0.92985 0.74535 0.92207 0.90157 0.84811 0.87573 0.95262 0.94667 0.79398 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.49 71.98 0.61 -1.48 16 2 C -0.14 -2.26 5.58 30.59 0.17 -2.09 16 3 C 0.07 1.36 2.54 29.85 0.08 1.43 16 4 H 0.13 1.79 5.42 -2.39 -0.01 1.77 16 5 O -0.30 -7.50 8.15 -73.44 -0.60 -8.10 16 6 C 0.11 2.23 5.63 22.51 0.13 2.36 16 7 C -0.21 -3.35 7.38 22.37 0.17 -3.18 16 8 C -0.09 -1.13 10.04 22.26 0.22 -0.90 16 9 C -0.16 -1.95 10.04 22.28 0.22 -1.73 16 10 C -0.09 -1.31 9.70 22.25 0.22 -1.09 16 11 C -0.14 -2.76 5.89 -19.77 -0.12 -2.88 16 12 C -0.10 -1.97 9.80 71.24 0.70 -1.27 16 13 C 0.51 12.84 7.23 87.65 0.63 13.47 16 14 O -0.57 -19.77 16.50 15.99 0.26 -19.51 16 15 N -0.71 -14.59 5.41 -466.78 -2.53 -17.12 16 16 C 0.16 3.65 6.11 85.63 0.52 4.17 16 17 C -0.16 -3.82 9.24 25.65 0.24 -3.58 16 18 C -0.13 -3.97 9.24 25.65 0.24 -3.73 16 19 C 0.17 6.61 6.70 85.63 0.57 7.18 16 20 N -0.74 -37.28 5.59 -347.18 -1.94 -39.22 16 21 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 23 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 24 N -0.97 -58.83 13.06 21.65 0.28 -58.55 16 25 Si 0.98 45.39 29.55 68.60 2.03 47.42 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 H 0.05 0.81 6.55 -2.39 -0.02 0.80 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 0.78 6.74 -2.38 -0.02 0.76 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.10 1.38 7.43 -2.39 -0.02 1.36 16 34 H 0.15 1.71 4.29 -2.91 -0.01 1.70 16 35 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 40 H 0.05 1.18 7.52 -2.39 -0.02 1.16 16 41 H 0.42 6.35 7.82 -92.71 -0.73 5.63 16 42 H 0.06 1.58 7.79 -2.39 -0.02 1.56 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.13 2.76 7.84 -2.91 -0.02 2.74 16 45 H 0.11 3.31 7.84 -2.91 -0.02 3.29 16 46 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.04 1.29 7.79 -2.39 -0.02 1.27 16 48 H 0.37 20.04 7.66 -92.71 -0.71 19.33 16 49 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -74.13 402.49 2.94 -71.18 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.47 Total: 33.92 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.90 Total: -10.02 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -4.18 Total: -114.89 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.33 Total: -27.61 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.13 2.94 -71.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716349591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.172 kcal (2) G-P(sol) polarization free energy of solvation -74.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds