Wall clock time and date at job start Tue Mar 31 2020 16:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 H 1.09002 * 109.46999 * 55.00016 * 3 2 1 5 5 O 1.42901 * 109.47354 * 295.00521 * 3 2 1 6 6 C 1.35893 * 117.00437 * 102.11520 * 5 3 2 7 7 C 1.38756 * 120.05299 * 353.85486 * 6 5 3 8 8 C 1.38122 * 119.94253 * 180.27480 * 7 6 5 9 9 C 1.38290 * 120.05798 * 359.77236 * 8 7 6 10 10 C 1.38238 * 120.11032 * 359.97438 * 9 8 7 11 11 C 1.38165 * 120.05590 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.03128 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47221 * 175.00103 * 3 2 1 14 14 O 1.21283 * 119.99929 * 119.99921 * 13 3 2 15 15 N 1.34772 * 120.00335 * 300.00565 * 13 3 2 16 16 C 1.46504 * 120.00484 * 179.97438 * 15 13 3 17 17 C 1.50692 * 109.46930 * 179.97438 * 16 15 13 18 18 C 1.31000 * 119.99676 * 127.92110 * 17 16 15 19 19 C 1.50703 * 120.00194 * 7.57067 * 18 17 16 20 20 N 1.46494 * 109.47441 * 127.91792 * 19 18 17 21 21 C 1.36940 * 119.99939 * 179.97438 * 20 19 18 22 22 H 1.08000 * 120.00093 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99774 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00593 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47078 * 59.99865 * 25 23 21 27 27 H 1.48502 * 109.47415 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47369 * 299.99704 * 25 23 21 29 29 H 1.09003 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47281 * 299.99108 * 1 2 3 31 31 H 1.08998 * 109.47337 * 59.99941 * 1 2 3 32 32 H 1.09005 * 109.46859 * 240.00613 * 2 1 3 33 33 H 1.08997 * 109.47383 * 120.00845 * 2 1 3 34 34 H 1.08003 * 120.03015 * 0.02771 * 7 6 5 35 35 H 1.08005 * 119.97281 * 179.75056 * 8 7 6 36 36 H 1.07996 * 119.94697 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.97497 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.46867 * 89.99671 * 12 11 10 39 39 H 1.09000 * 109.46768 * 329.99590 * 12 11 10 40 40 H 1.08994 * 109.47086 * 210.00087 * 12 11 10 41 41 H 0.97005 * 119.99571 * 359.97438 * 15 13 3 42 42 H 1.08999 * 109.46354 * 299.99839 * 16 15 13 43 43 H 1.08994 * 109.46642 * 59.99523 * 16 15 13 44 44 H 1.07995 * 120.00589 * 307.91758 * 17 16 15 45 45 H 1.08002 * 120.00371 * 187.56779 * 18 17 16 46 46 H 1.08999 * 109.46961 * 247.92076 * 19 18 17 47 47 H 1.08999 * 109.46790 * 7.91139 * 19 18 17 48 48 H 0.97006 * 120.00139 * 0.02562 * 20 19 18 49 49 H 0.96994 * 120.00113 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6618 2.0814 -1.2210 6 6 0.6007 2.9289 -1.1710 7 6 -0.1418 3.0448 -0.0045 8 6 -1.2233 3.9026 0.0419 9 6 -1.5637 4.6491 -1.0713 10 6 -0.8224 4.5393 -2.2330 11 6 0.2604 3.6827 -2.2846 12 6 1.0677 3.5631 -3.5515 13 6 3.5419 1.4443 0.1238 14 8 4.2215 1.9436 -0.7478 15 7 4.1298 0.8911 1.2030 16 6 5.5899 0.8924 1.3231 17 6 5.9885 0.2192 2.6110 18 6 6.8691 -0.7506 2.5979 19 6 7.6090 -1.0795 1.3269 20 7 9.0498 -1.0976 1.5913 21 6 9.9283 -1.3758 0.5783 22 1 9.5590 -1.5816 -0.4155 23 6 11.2935 -1.3935 0.8290 24 7 11.7437 -1.1423 2.0401 25 14 12.4919 -1.7724 -0.5529 26 1 12.3383 -0.7637 -1.6318 27 1 13.8810 -1.7289 -0.0294 28 1 12.2095 -3.1253 -1.0961 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.1234 2.4617 0.8651 35 1 -1.8040 3.9901 0.9484 36 1 -2.4099 5.3189 -1.0331 37 1 -1.0904 5.1230 -3.1012 38 1 1.8775 4.2925 -3.5365 39 1 0.4247 3.7515 -4.4112 40 1 1.4848 2.5586 -3.6231 41 1 3.5861 0.4920 1.9002 42 1 6.0241 0.3531 0.4812 43 1 5.9535 1.9199 1.3229 44 1 5.5483 0.5362 3.5449 45 1 7.0649 -1.3145 3.4980 46 1 7.2935 -2.0583 0.9657 47 1 7.3875 -0.3250 0.5720 48 1 9.3815 -0.9132 2.4840 49 1 12.6976 -1.1544 2.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716349593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:11 Heat of formation + Delta-G solvation = -16.074791 kcal Electronic energy + Delta-G solvation = -27611.032850 eV Core-core repulsion = 23732.452544 eV Total energy + Delta-G solvation = -3878.580305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08694 -39.58812 -37.75775 -36.52312 -34.73605 -34.15869 -32.94199 -32.62834 -30.56582 -30.41575 -28.39703 -27.00096 -26.16361 -24.77701 -23.42969 -22.49629 -22.08141 -21.86274 -20.36275 -18.94914 -18.58788 -17.51108 -16.74847 -16.45494 -16.13618 -16.05416 -15.77915 -15.19444 -14.89735 -14.77990 -14.40230 -14.23222 -13.94453 -13.61260 -13.50816 -13.42737 -13.22645 -12.98965 -12.71766 -12.64118 -12.53105 -12.50574 -12.29568 -12.12201 -11.77463 -11.70554 -11.51876 -11.29639 -10.96272 -10.86807 -10.78496 -10.47117 -10.07070 -9.91703 -9.77372 -9.25028 -9.13611 -9.04614 -8.63696 -8.38208 -6.93092 -5.77196 -3.06589 0.99145 1.11611 2.10910 2.43524 2.63708 3.41385 3.44742 3.45818 3.49732 3.51301 4.21112 4.31303 4.41092 4.47902 4.56985 4.61462 4.73041 4.76137 4.93520 4.98381 5.01679 5.08201 5.21211 5.24977 5.29785 5.38344 5.50260 5.54770 5.55618 5.57192 5.64063 5.65421 5.81322 5.84579 5.92924 5.99575 6.01020 6.15385 6.19276 6.22580 6.25634 6.46164 6.51178 6.54804 6.83424 7.06083 7.10111 7.36931 7.69667 8.07698 8.41190 9.52540 10.07976 10.43292 11.45438 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.001943 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.507676 B =14408.471278 C =15139.406798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.065 3.935 4 H 0.104 0.896 5 O -0.277 6.277 6 C 0.131 3.869 7 C -0.210 4.210 8 C -0.086 4.086 9 C -0.156 4.156 10 C -0.084 4.084 11 C -0.113 4.113 12 C -0.108 4.108 13 C 0.507 3.493 14 O -0.514 6.514 15 N -0.719 5.719 16 C 0.142 3.858 17 C -0.201 4.201 18 C -0.106 4.106 19 C 0.161 3.839 20 N -0.727 5.727 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.285 1.285 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.399 0.601 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.029 0.971 47 H 0.036 0.964 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.926 8.128 -1.436 32.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 C 0.005 3.995 4 H 0.121 0.879 5 O -0.189 6.189 6 C 0.086 3.914 7 C -0.229 4.229 8 C -0.105 4.105 9 C -0.175 4.175 10 C -0.102 4.102 11 C -0.113 4.113 12 C -0.164 4.164 13 C 0.291 3.709 14 O -0.388 6.388 15 N -0.372 5.372 16 C 0.020 3.980 17 C -0.221 4.221 18 C -0.126 4.126 19 C 0.034 3.966 20 N -0.372 5.372 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.740 3.260 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.218 0.782 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -31.195 8.404 -2.434 32.399 hybrid contribution 0.518 -0.329 0.407 0.737 sum -30.676 8.075 -2.027 31.786 Atomic orbital electron populations 1.21886 0.94391 1.02607 1.02346 1.21976 0.97386 0.93711 1.04430 1.22422 0.93100 0.95526 0.88502 0.87891 1.86212 1.45190 1.55805 1.31706 1.18891 0.87700 0.90589 0.94217 1.21304 0.99211 1.04390 0.97948 1.20900 0.95991 0.95156 0.98409 1.21038 1.01249 1.01646 0.93517 1.20908 0.93950 0.97078 0.98290 1.19330 0.98632 0.98036 0.95345 1.20637 0.99041 1.03519 0.93229 1.20279 0.89241 0.78981 0.82419 1.90776 1.64839 1.43768 1.39403 1.45948 1.08372 1.60268 1.22651 1.20586 0.78342 1.01544 0.97494 1.22562 1.03242 0.99080 0.97192 1.23315 0.94393 0.94628 1.00239 1.20011 0.85701 0.98365 0.92483 1.42258 0.98776 1.85224 1.10920 1.19202 0.87447 1.40006 0.90647 0.91097 1.24762 0.96887 1.02533 0.96748 1.69653 1.13345 1.55873 1.19289 0.86230 0.80333 0.78192 0.81221 1.21139 1.21642 1.21200 0.91758 0.92391 0.92000 0.89805 0.89611 0.85134 0.85882 0.85983 0.85426 0.91109 0.91793 0.90858 0.76731 0.89154 0.90932 0.86997 0.86813 0.95380 0.94682 0.78156 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.56 37.16 0.32 -0.66 16 2 C -0.14 -1.02 5.58 -26.73 -0.15 -1.17 16 3 C 0.06 0.62 2.52 -27.88 -0.07 0.55 16 4 H 0.10 0.76 5.30 -51.93 -0.28 0.48 16 5 O -0.28 -3.33 8.11 -39.31 -0.32 -3.65 16 6 C 0.13 1.39 5.69 -39.21 -0.22 1.17 16 7 C -0.21 -1.76 7.61 -39.43 -0.30 -2.07 16 8 C -0.09 -0.64 10.04 -39.60 -0.40 -1.04 16 9 C -0.16 -1.15 10.04 -39.56 -0.40 -1.55 16 10 C -0.08 -0.69 9.70 -39.61 -0.38 -1.07 16 11 C -0.11 -1.14 5.89 -104.47 -0.62 -1.75 16 12 C -0.11 -1.02 9.80 36.01 0.35 -0.67 16 13 C 0.51 6.58 7.23 -10.99 -0.08 6.51 16 14 O -0.51 -9.29 16.50 -14.35 -0.24 -9.52 16 15 N -0.72 -7.83 5.41 -61.48 -0.33 -8.17 16 16 C 0.14 1.97 5.73 -5.20 -0.03 1.94 16 17 C -0.20 -2.62 9.63 -36.03 -0.35 -2.96 16 18 C -0.11 -1.68 9.63 -36.02 -0.35 -2.02 16 19 C 0.16 3.26 6.32 -5.20 -0.03 3.22 16 20 N -0.73 -18.74 5.59 -61.09 -0.34 -19.08 16 21 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 25 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 6.93 -51.93 -0.36 -0.07 16 31 H 0.06 0.48 6.74 -51.93 -0.35 0.13 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.47 7.43 -51.93 -0.39 0.09 16 34 H 0.13 0.85 4.44 -52.48 -0.23 0.62 16 35 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 40 H 0.07 0.79 7.52 -51.93 -0.39 0.39 16 41 H 0.40 2.93 7.82 -40.82 -0.32 2.61 16 42 H 0.09 1.47 5.34 -51.93 -0.28 1.19 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.73 5.34 -51.93 -0.28 0.45 16 48 H 0.38 10.34 7.66 -40.82 -0.31 10.03 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -34.96 398.78 -9.84 -44.81 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.38 Total: 8.75 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.95 Total: -9.12 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.05 Total: -55.02 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.56 Total: -13.17 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.96 -9.84 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716349593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.732 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds