Wall clock time and date at job start Tue Mar 31 2020 16:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 H 1.09002 * 109.46999 * 55.00016 * 3 2 1 5 5 O 1.42901 * 109.47354 * 295.00521 * 3 2 1 6 6 C 1.35893 * 117.00437 * 102.11520 * 5 3 2 7 7 C 1.38756 * 120.05299 * 353.85486 * 6 5 3 8 8 C 1.38122 * 119.94253 * 180.27480 * 7 6 5 9 9 C 1.38290 * 120.05798 * 359.77236 * 8 7 6 10 10 C 1.38238 * 120.11032 * 359.97438 * 9 8 7 11 11 C 1.38165 * 120.05590 * 0.02562 * 10 9 8 12 12 C 1.50705 * 120.03128 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47221 * 175.00103 * 3 2 1 14 14 O 1.21283 * 119.99929 * 119.99921 * 13 3 2 15 15 N 1.34772 * 120.00335 * 300.00565 * 13 3 2 16 16 C 1.46504 * 120.00484 * 179.97438 * 15 13 3 17 17 C 1.50692 * 109.46930 * 179.97438 * 16 15 13 18 18 C 1.31000 * 119.99676 * 127.92110 * 17 16 15 19 19 C 1.50703 * 120.00194 * 7.57067 * 18 17 16 20 20 N 1.46494 * 109.47441 * 127.91792 * 19 18 17 21 21 C 1.36940 * 119.99939 * 179.97438 * 20 19 18 22 22 H 1.08000 * 120.00093 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99774 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00593 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47078 * 59.99865 * 25 23 21 27 27 H 1.48502 * 109.47415 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47369 * 299.99704 * 25 23 21 29 29 H 1.09003 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47281 * 299.99108 * 1 2 3 31 31 H 1.08998 * 109.47337 * 59.99941 * 1 2 3 32 32 H 1.09005 * 109.46859 * 240.00613 * 2 1 3 33 33 H 1.08997 * 109.47383 * 120.00845 * 2 1 3 34 34 H 1.08003 * 120.03015 * 0.02771 * 7 6 5 35 35 H 1.08005 * 119.97281 * 179.75056 * 8 7 6 36 36 H 1.07996 * 119.94697 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.97497 * 179.97438 * 10 9 8 38 38 H 1.08996 * 109.46867 * 89.99671 * 12 11 10 39 39 H 1.09000 * 109.46768 * 329.99590 * 12 11 10 40 40 H 1.08994 * 109.47086 * 210.00087 * 12 11 10 41 41 H 0.97005 * 119.99571 * 359.97438 * 15 13 3 42 42 H 1.08999 * 109.46354 * 299.99839 * 16 15 13 43 43 H 1.08994 * 109.46642 * 59.99523 * 16 15 13 44 44 H 1.07995 * 120.00589 * 307.91758 * 17 16 15 45 45 H 1.08002 * 120.00371 * 187.56779 * 18 17 16 46 46 H 1.08999 * 109.46961 * 247.92076 * 19 18 17 47 47 H 1.08999 * 109.46790 * 7.91139 * 19 18 17 48 48 H 0.97006 * 120.00139 * 0.02562 * 20 19 18 49 49 H 0.96994 * 120.00113 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6618 2.0814 -1.2210 6 6 0.6007 2.9289 -1.1710 7 6 -0.1418 3.0448 -0.0045 8 6 -1.2233 3.9026 0.0419 9 6 -1.5637 4.6491 -1.0713 10 6 -0.8224 4.5393 -2.2330 11 6 0.2604 3.6827 -2.2846 12 6 1.0677 3.5631 -3.5515 13 6 3.5419 1.4443 0.1238 14 8 4.2215 1.9436 -0.7478 15 7 4.1298 0.8911 1.2030 16 6 5.5899 0.8924 1.3231 17 6 5.9885 0.2192 2.6110 18 6 6.8691 -0.7506 2.5979 19 6 7.6090 -1.0795 1.3269 20 7 9.0498 -1.0976 1.5913 21 6 9.9283 -1.3758 0.5783 22 1 9.5590 -1.5816 -0.4155 23 6 11.2935 -1.3935 0.8290 24 7 11.7437 -1.1423 2.0401 25 14 12.4919 -1.7724 -0.5529 26 1 12.3383 -0.7637 -1.6318 27 1 13.8810 -1.7289 -0.0294 28 1 12.2095 -3.1253 -1.0961 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.1234 2.4617 0.8651 35 1 -1.8040 3.9901 0.9484 36 1 -2.4099 5.3189 -1.0331 37 1 -1.0904 5.1230 -3.1012 38 1 1.8775 4.2925 -3.5365 39 1 0.4247 3.7515 -4.4112 40 1 1.4848 2.5586 -3.6231 41 1 3.5861 0.4920 1.9002 42 1 6.0241 0.3531 0.4812 43 1 5.9535 1.9199 1.3229 44 1 5.5483 0.5362 3.5449 45 1 7.0649 -1.3145 3.4980 46 1 7.2935 -2.0583 0.9657 47 1 7.3875 -0.3250 0.5720 48 1 9.3815 -0.9132 2.4840 49 1 12.6976 -1.1544 2.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716349593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:10 Heat of formation + Delta-G solvation = -38.095795 kcal Electronic energy + Delta-G solvation = -27611.987752 eV Core-core repulsion = 23732.452544 eV Total energy + Delta-G solvation = -3879.535208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87106 -40.51810 -38.53643 -37.88184 -36.18311 -35.11002 -34.23631 -33.42107 -32.33819 -31.12307 -29.31181 -27.82438 -27.47673 -26.18614 -24.40942 -24.02739 -22.86509 -22.52505 -21.29628 -20.18981 -19.32754 -19.11141 -18.11869 -17.57765 -16.98612 -16.86906 -16.54502 -16.41452 -16.11314 -15.82282 -15.51564 -15.33759 -15.09295 -14.82069 -14.77171 -14.42280 -14.20958 -14.03028 -13.93993 -13.64966 -13.37940 -13.23810 -13.19641 -13.01218 -12.93201 -12.77045 -12.72481 -12.29827 -12.23946 -12.09430 -11.95592 -11.90775 -11.68118 -11.49102 -11.04406 -10.93438 -10.39923 -9.97282 -9.74406 -9.06031 -9.01145 -7.99149 -5.28641 0.38795 0.48103 0.98957 1.41557 1.45155 1.48487 1.54645 1.76020 2.53577 2.57619 2.82440 3.33951 3.48730 3.59351 3.71298 3.78646 3.87752 3.95596 4.11096 4.16041 4.17031 4.23814 4.33199 4.38822 4.42423 4.47615 4.58033 4.65792 4.73012 4.75103 4.76010 4.82763 4.89784 4.97735 5.00242 5.05408 5.09145 5.27859 5.29516 5.32013 5.41523 5.43796 5.53869 5.56950 5.62142 5.84412 5.87160 6.23535 6.33989 6.50938 7.12028 7.29563 8.03326 8.28123 9.23832 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.001943 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.507676 B =14408.471278 C =15139.406798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.070 3.930 4 H 0.132 0.868 5 O -0.306 6.306 6 C 0.106 3.894 7 C -0.212 4.212 8 C -0.087 4.087 9 C -0.158 4.158 10 C -0.089 4.089 11 C -0.141 4.141 12 C -0.104 4.104 13 C 0.503 3.497 14 O -0.575 6.575 15 N -0.698 5.698 16 C 0.141 3.859 17 C -0.158 4.158 18 C -0.133 4.133 19 C 0.160 3.840 20 N -0.741 5.741 21 C -0.253 4.253 22 H 0.072 0.928 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.975 3.025 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.276 1.276 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.421 0.579 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.155 0.845 45 H 0.127 0.873 46 H 0.025 0.975 47 H 0.030 0.970 48 H 0.376 0.624 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.805 8.485 0.068 35.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C 0.010 3.990 4 H 0.149 0.851 5 O -0.219 6.219 6 C 0.061 3.939 7 C -0.230 4.230 8 C -0.105 4.105 9 C -0.176 4.176 10 C -0.107 4.107 11 C -0.141 4.141 12 C -0.161 4.161 13 C 0.289 3.711 14 O -0.453 6.453 15 N -0.353 5.353 16 C 0.018 3.982 17 C -0.177 4.177 18 C -0.152 4.152 19 C 0.034 3.966 20 N -0.384 5.384 21 C -0.384 4.384 22 H 0.090 0.910 23 C -0.266 4.266 24 N -0.616 5.616 25 Si 0.803 3.197 26 H -0.207 1.207 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.259 0.741 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.173 0.827 45 H 0.145 0.855 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.208 0.792 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -34.145 8.734 -0.909 35.257 hybrid contribution 1.261 -0.361 -0.086 1.314 sum -32.885 8.374 -0.996 33.949 Atomic orbital electron populations 1.21851 0.93122 1.03296 1.02413 1.22003 0.98382 0.92039 1.04618 1.22535 0.90314 0.97144 0.88989 0.85091 1.86180 1.46207 1.56560 1.32976 1.19172 0.88082 0.91175 0.95436 1.21529 0.99151 1.04699 0.97622 1.21299 0.95568 0.94181 0.99466 1.21416 1.01521 1.01581 0.93049 1.21176 0.93315 0.96662 0.99553 1.19576 0.99776 0.99319 0.95465 1.20578 0.99149 1.01857 0.94505 1.21026 0.90759 0.77653 0.81669 1.90750 1.66449 1.46508 1.41597 1.45687 1.07261 1.59522 1.22813 1.20384 0.80068 1.00547 0.97186 1.22764 1.00826 0.96107 0.97955 1.23049 0.96260 0.97224 0.98642 1.20087 0.83433 0.97972 0.95104 1.42460 1.00892 1.85097 1.09933 1.19587 0.88377 1.39075 0.91378 0.90992 1.25596 0.98622 1.03213 0.99164 1.69800 1.13323 1.57395 1.21122 0.85196 0.77803 0.78292 0.78381 1.20658 1.21670 1.20173 0.90752 0.90369 0.93834 0.91947 0.87066 0.83292 0.83058 0.83494 0.83691 0.92202 0.89831 0.92983 0.74107 0.92049 0.92022 0.82741 0.85515 0.95733 0.95240 0.79167 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.56 71.98 0.62 -0.94 16 2 C -0.13 -1.77 5.58 30.59 0.17 -1.60 16 3 C 0.07 1.28 2.52 29.85 0.08 1.36 16 4 H 0.13 1.59 5.30 -2.39 -0.01 1.58 16 5 O -0.31 -7.58 8.11 -73.31 -0.59 -8.18 16 6 C 0.11 2.22 5.69 22.51 0.13 2.35 16 7 C -0.21 -3.11 7.61 22.37 0.17 -2.93 16 8 C -0.09 -1.02 10.04 22.25 0.22 -0.80 16 9 C -0.16 -1.91 10.04 22.28 0.22 -1.69 16 10 C -0.09 -1.35 9.70 22.25 0.22 -1.13 16 11 C -0.14 -2.87 5.89 -19.77 -0.12 -2.98 16 12 C -0.10 -2.13 9.80 71.24 0.70 -1.43 16 13 C 0.50 13.04 7.23 87.66 0.63 13.68 16 14 O -0.57 -21.86 16.50 16.00 0.26 -21.59 16 15 N -0.70 -14.15 5.41 -466.80 -2.53 -16.68 16 16 C 0.14 3.82 5.73 85.63 0.49 4.31 16 17 C -0.16 -3.70 9.63 25.64 0.25 -3.45 16 18 C -0.13 -4.01 9.63 25.65 0.25 -3.77 16 19 C 0.16 6.56 6.32 85.64 0.54 7.10 16 20 N -0.74 -38.93 5.59 -347.18 -1.94 -40.88 16 21 C -0.25 -14.67 9.99 84.03 0.84 -13.83 16 22 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 24 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 25 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 26 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.50 6.93 -2.39 -0.02 0.48 16 31 H 0.04 0.63 6.74 -2.39 -0.02 0.62 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 0.88 7.43 -2.39 -0.02 0.86 16 34 H 0.15 1.44 4.44 -2.91 -0.01 1.43 16 35 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 36 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 40 H 0.05 1.25 7.52 -2.39 -0.02 1.23 16 41 H 0.42 4.76 7.82 -92.70 -0.73 4.04 16 42 H 0.06 2.06 5.34 -2.39 -0.01 2.05 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 45 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 46 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.03 1.27 5.34 -2.39 -0.01 1.25 16 48 H 0.38 20.66 7.66 -92.70 -0.71 19.95 16 49 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -79.90 398.78 2.92 -76.97 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.46 Total: 30.29 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.87 Total: -9.62 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -4.18 Total: -117.23 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.33 Total: -29.77 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -79.90 2.92 -76.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716349593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.877 kcal (2) G-P(sol) polarization free energy of solvation -79.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds