Wall clock time and date at job start Tue Mar 31 2020 16:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47306 * 2 1 4 4 H 1.08996 * 109.46828 * 55.00040 * 3 2 1 5 5 O 1.42898 * 109.47016 * 295.00004 * 3 2 1 6 6 C 1.42900 * 114.00132 * 149.99587 * 5 3 2 7 7 C 1.50704 * 109.47232 * 175.00129 * 3 2 1 8 8 O 1.21274 * 119.99926 * 114.99644 * 7 3 2 9 9 N 1.34773 * 119.99690 * 295.00193 * 7 3 2 10 10 C 1.46503 * 119.99624 * 180.02562 * 9 7 3 11 11 C 1.53001 * 109.46768 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.81635 * 294.21771 * 11 10 9 13 13 C 1.52792 * 109.77371 * 173.44562 * 11 10 9 14 14 C 1.50597 * 110.85470 * 192.91679 * 13 11 10 15 15 C 1.38976 * 117.62055 * 199.69351 * 14 13 11 16 16 C 1.37914 * 120.58304 * 180.71540 * 15 14 13 17 17 C 1.38265 * 119.82594 * 359.92848 * 16 15 14 18 18 C 1.37953 * 119.71698 * 359.79844 * 17 16 15 19 19 C 1.37672 * 122.86251 * 20.02803 * 14 13 11 20 20 C 1.50818 * 122.34616 * 358.79197 * 19 14 13 21 21 N 1.46679 * 109.67740 * 11.35696 * 20 19 14 22 22 C 1.36940 * 121.33870 * 135.67806 * 21 20 19 23 23 H 1.07999 * 119.99886 * 207.24605 * 22 21 20 24 24 C 1.38815 * 120.00047 * 27.23664 * 22 21 20 25 25 N 1.31614 * 120.00143 * 11.66817 * 24 22 21 26 26 Si 1.86804 * 119.99812 * 191.67174 * 24 22 21 27 27 H 1.48497 * 109.46949 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.46907 * 120.00161 * 26 24 22 29 29 H 1.48496 * 109.46704 * 239.99949 * 26 24 22 30 30 H 1.08998 * 109.46809 * 59.99776 * 1 2 3 31 31 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46820 * 300.00154 * 1 2 3 33 33 H 1.09008 * 109.47150 * 240.00019 * 2 1 3 34 34 H 1.09003 * 109.47465 * 119.99961 * 2 1 3 35 35 H 1.09002 * 109.46772 * 59.99976 * 6 5 3 36 36 H 1.09001 * 109.47597 * 179.97438 * 6 5 3 37 37 H 1.08996 * 109.47191 * 300.00238 * 6 5 3 38 38 H 0.97000 * 120.00295 * 359.97438 * 9 7 3 39 39 H 1.08997 * 109.47151 * 60.00266 * 10 9 7 40 40 H 1.08996 * 109.47102 * 299.99387 * 10 9 7 41 41 H 1.09001 * 109.20076 * 313.27393 * 13 11 10 42 42 H 1.09006 * 109.20134 * 72.56319 * 13 11 10 43 43 H 1.08002 * 119.71069 * 0.76100 * 15 14 13 44 44 H 1.08001 * 120.08183 * 180.20389 * 16 15 14 45 45 H 1.07993 * 120.13789 * 179.81762 * 17 16 15 46 46 H 1.07996 * 119.74839 * 180.17995 * 18 17 16 47 47 H 1.09004 * 109.43144 * 131.41496 * 20 19 14 48 48 H 1.08992 * 109.43091 * 251.28797 * 20 19 14 49 49 H 0.96996 * 120.00448 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 1.4559 3.4903 -1.1003 7 6 3.5420 1.4443 0.1238 8 8 4.2251 1.8610 -0.7876 9 7 4.1260 0.9827 1.2473 10 6 5.5861 0.9850 1.3679 11 6 5.9862 0.4146 2.7300 12 1 5.6452 1.0795 3.5236 13 6 7.5048 0.2618 2.8006 14 6 7.9046 -0.5777 3.9853 15 6 9.2150 -0.4730 4.4362 16 6 9.6507 -1.2248 5.5072 17 6 8.7777 -2.0900 6.1406 18 6 7.4748 -2.1918 5.6987 19 6 7.0349 -1.4347 4.6212 20 6 5.5951 -1.5841 4.1977 21 7 5.3885 -0.9193 2.9066 22 6 4.6682 -1.5150 1.9060 23 1 4.8714 -1.2690 0.8742 24 6 3.6768 -2.4354 2.2177 25 7 3.2697 -2.5679 3.4623 26 14 2.9207 -3.4859 0.8708 27 1 3.5473 -3.1466 -0.4321 28 1 3.1528 -4.9211 1.1734 29 1 1.4606 -3.2247 0.8003 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3769 3.9644 -0.7609 36 1 1.1724 3.9005 -2.0696 37 1 0.6618 3.6808 -0.3784 38 1 3.5797 0.6497 1.9763 39 1 5.9564 2.0063 1.2791 40 1 6.0170 0.3721 0.5762 41 1 7.8599 -0.2151 1.8871 42 1 7.9606 1.2479 2.8899 43 1 9.8980 0.2036 3.9441 44 1 10.6699 -1.1347 5.8530 45 1 9.1143 -2.6833 6.9778 46 1 6.7918 -2.8652 6.1948 47 1 5.3528 -2.6426 4.1035 48 1 4.9476 -1.1297 4.9475 49 1 2.5773 -3.2112 3.6802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717244078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:30 Heat of formation + Delta-G solvation = -38.546786 kcal Electronic energy + Delta-G solvation = -30038.394907 eV Core-core repulsion = 26158.840143 eV Total energy + Delta-G solvation = -3879.554764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.73666 -39.21985 -37.36853 -36.35687 -33.85670 -33.32631 -32.75622 -31.44722 -30.28530 -29.04342 -27.70921 -26.23004 -25.64297 -24.70933 -22.88309 -21.78358 -21.55619 -21.07127 -19.79051 -19.07721 -17.30130 -16.76852 -16.23207 -16.12330 -15.54128 -15.18013 -14.91393 -14.55777 -14.43456 -14.21165 -14.11392 -13.80191 -13.63891 -13.40859 -13.06451 -12.93823 -12.62855 -12.49265 -12.37177 -12.08403 -11.72098 -11.68287 -11.59588 -11.37135 -11.14625 -11.00232 -10.87772 -10.80045 -10.66405 -10.54160 -10.47722 -10.25355 -10.22208 -10.02104 -9.72978 -8.83332 -8.80522 -8.30864 -8.24052 -7.87784 -6.87245 -5.96319 -3.39667 1.84379 1.92000 3.12925 3.26186 3.36775 3.40614 3.63032 4.09214 4.26519 4.33385 5.05213 5.12508 5.16887 5.17790 5.23787 5.29544 5.34236 5.39607 5.44713 5.54299 5.55233 5.57357 5.69542 5.73696 5.78777 5.88209 5.91854 5.99798 6.02243 6.04992 6.16848 6.27627 6.30151 6.32359 6.34355 6.52805 6.58292 6.60058 6.78373 6.92112 6.93344 7.10169 7.11258 7.16165 7.23567 7.47324 7.61103 7.69416 8.20181 8.25538 8.85347 9.03178 9.62601 10.20886 11.12453 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.004149 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.138699 B = 6747.227109 C = 8210.450103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.079 3.921 4 H 0.081 0.919 5 O -0.359 6.359 6 C 0.031 3.969 7 C 0.485 3.515 8 O -0.551 6.551 9 N -0.691 5.691 10 C 0.136 3.864 11 C 0.158 3.842 12 H 0.042 0.958 13 C -0.090 4.090 14 C -0.067 4.067 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.077 4.077 20 C 0.207 3.793 21 N -0.588 5.588 22 C -0.244 4.244 23 H 0.074 0.926 24 C 0.009 3.991 25 N -0.904 5.904 26 Si 0.886 3.114 27 H -0.275 1.275 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.416 0.584 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.098 0.902 48 H 0.042 0.958 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 6.744 1.741 7.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.018 3.982 4 H 0.099 0.901 5 O -0.276 6.276 6 C -0.065 4.065 7 C 0.270 3.730 8 O -0.430 6.430 9 N -0.344 5.344 10 C 0.012 3.988 11 C 0.051 3.949 12 H 0.060 0.940 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.082 3.918 21 N -0.312 5.312 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.190 4.190 25 N -0.548 5.548 26 Si 0.716 3.284 27 H -0.200 1.200 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.253 0.747 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.366 6.831 0.949 7.031 hybrid contribution -0.380 -0.786 0.061 0.875 sum 0.986 6.046 1.010 6.208 Atomic orbital electron populations 1.21692 0.95026 1.01852 1.01695 1.21681 0.96746 0.92800 1.04783 1.22081 0.91508 0.96300 0.88345 0.90149 1.87966 1.88217 1.20323 1.31089 1.22785 0.99516 0.82095 1.02141 1.21189 0.90932 0.78224 0.82675 1.90635 1.65148 1.48006 1.39212 1.45961 1.07872 1.61993 1.18594 1.21232 0.80724 0.99149 0.97703 1.20713 0.91295 0.88579 0.94320 0.94039 1.20886 0.98194 0.97768 0.96153 1.19479 0.92994 0.97458 0.96845 1.21127 0.95608 1.00286 0.97558 1.20852 0.99077 0.98423 0.97489 1.20951 0.94189 0.99527 1.00191 1.21115 0.95749 1.00020 0.97318 1.21013 0.99157 0.93774 0.93942 1.19790 0.85399 0.99974 0.86640 1.44047 1.60778 1.12766 1.13584 1.19201 1.10424 1.20161 0.87533 0.90877 1.24976 0.96975 1.00968 0.96079 1.69958 1.30980 1.37204 1.16700 0.86477 0.79296 0.80687 0.81960 1.20008 1.21695 1.20944 0.92295 0.92478 0.92858 0.90839 0.88306 0.93888 0.89738 0.94303 0.74660 0.92568 0.91563 0.90793 0.91895 0.87101 0.87133 0.87002 0.86475 0.88454 0.94012 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 37.16 0.36 -1.68 16 2 C -0.12 -2.04 5.61 -26.73 -0.15 -2.19 16 3 C 0.08 1.28 2.52 -27.88 -0.07 1.21 16 4 H 0.08 1.11 7.79 -51.93 -0.40 0.71 16 5 O -0.36 -5.90 9.42 -55.09 -0.52 -6.42 16 6 C 0.03 0.40 10.81 101.05 1.09 1.49 16 7 C 0.49 9.18 7.13 -10.99 -0.08 9.10 16 8 O -0.55 -12.14 16.51 -14.30 -0.24 -12.38 16 9 N -0.69 -12.70 3.90 -60.29 -0.24 -12.94 16 10 C 0.14 2.46 4.45 -4.04 -0.02 2.44 16 11 C 0.16 2.89 3.02 -67.64 -0.20 2.69 16 12 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 13 C -0.09 -1.51 5.21 -28.04 -0.15 -1.65 16 14 C -0.07 -1.19 5.76 -104.61 -0.60 -1.79 16 15 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 16 C -0.14 -2.04 10.04 -39.69 -0.40 -2.43 16 17 C -0.13 -1.95 10.05 -39.68 -0.40 -2.35 16 18 C -0.12 -2.11 9.62 -39.46 -0.38 -2.49 16 19 C -0.08 -1.47 5.82 -104.55 -0.61 -2.08 16 20 C 0.21 4.47 4.81 -5.04 -0.02 4.44 16 21 N -0.59 -12.65 2.85 -166.38 -0.47 -13.13 16 22 C -0.24 -5.72 7.00 -15.06 -0.11 -5.83 16 23 H 0.07 1.80 6.15 -52.49 -0.32 1.48 16 24 C 0.01 0.21 5.07 -17.43 -0.09 0.12 16 25 N -0.90 -22.72 11.05 55.49 0.61 -22.11 16 26 Si 0.89 20.09 28.84 -169.99 -4.90 15.19 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.10 1.81 7.02 -51.93 -0.36 1.45 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 38 H 0.42 7.83 7.05 -40.82 -0.29 7.54 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 41 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 42 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.11 1.46 8.05 -52.49 -0.42 1.04 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.87 8.05 -52.49 -0.42 1.45 16 47 H 0.10 2.37 6.42 -51.93 -0.33 2.03 16 48 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -27.74 389.64 -10.04 -37.78 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -7.96 Total: 11.48 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.19 Total: -3.35 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.10 Total: -48.18 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.76 Total: -18.80 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.90 Total: 15.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.74 -10.04 -37.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717244078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.762 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds