Wall clock time and date at job start Tue Mar 31 2020 16:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47306 * 2 1 4 4 H 1.08996 * 109.46828 * 55.00040 * 3 2 1 5 5 O 1.42898 * 109.47016 * 295.00004 * 3 2 1 6 6 C 1.42900 * 114.00132 * 149.99587 * 5 3 2 7 7 C 1.50704 * 109.47232 * 175.00129 * 3 2 1 8 8 O 1.21274 * 119.99926 * 114.99644 * 7 3 2 9 9 N 1.34773 * 119.99690 * 295.00193 * 7 3 2 10 10 C 1.46503 * 119.99624 * 180.02562 * 9 7 3 11 11 C 1.53001 * 109.46768 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.81635 * 294.21771 * 11 10 9 13 13 C 1.52792 * 109.77371 * 173.44562 * 11 10 9 14 14 C 1.50597 * 110.85470 * 192.91679 * 13 11 10 15 15 C 1.38976 * 117.62055 * 199.69351 * 14 13 11 16 16 C 1.37914 * 120.58304 * 180.71540 * 15 14 13 17 17 C 1.38265 * 119.82594 * 359.92848 * 16 15 14 18 18 C 1.37953 * 119.71698 * 359.79844 * 17 16 15 19 19 C 1.37672 * 122.86251 * 20.02803 * 14 13 11 20 20 C 1.50818 * 122.34616 * 358.79197 * 19 14 13 21 21 N 1.46679 * 109.67740 * 11.35696 * 20 19 14 22 22 C 1.36940 * 121.33870 * 135.67806 * 21 20 19 23 23 H 1.07999 * 119.99886 * 207.24605 * 22 21 20 24 24 C 1.38815 * 120.00047 * 27.23664 * 22 21 20 25 25 N 1.31614 * 120.00143 * 11.66817 * 24 22 21 26 26 Si 1.86804 * 119.99812 * 191.67174 * 24 22 21 27 27 H 1.48497 * 109.46949 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.46907 * 120.00161 * 26 24 22 29 29 H 1.48496 * 109.46704 * 239.99949 * 26 24 22 30 30 H 1.08998 * 109.46809 * 59.99776 * 1 2 3 31 31 H 1.08996 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46820 * 300.00154 * 1 2 3 33 33 H 1.09008 * 109.47150 * 240.00019 * 2 1 3 34 34 H 1.09003 * 109.47465 * 119.99961 * 2 1 3 35 35 H 1.09002 * 109.46772 * 59.99976 * 6 5 3 36 36 H 1.09001 * 109.47597 * 179.97438 * 6 5 3 37 37 H 1.08996 * 109.47191 * 300.00238 * 6 5 3 38 38 H 0.97000 * 120.00295 * 359.97438 * 9 7 3 39 39 H 1.08997 * 109.47151 * 60.00266 * 10 9 7 40 40 H 1.08996 * 109.47102 * 299.99387 * 10 9 7 41 41 H 1.09001 * 109.20076 * 313.27393 * 13 11 10 42 42 H 1.09006 * 109.20134 * 72.56319 * 13 11 10 43 43 H 1.08002 * 119.71069 * 0.76100 * 15 14 13 44 44 H 1.08001 * 120.08183 * 180.20389 * 16 15 14 45 45 H 1.07993 * 120.13789 * 179.81762 * 17 16 15 46 46 H 1.07996 * 119.74839 * 180.17995 * 18 17 16 47 47 H 1.09004 * 109.43144 * 131.41496 * 20 19 14 48 48 H 1.08992 * 109.43091 * 251.28797 * 20 19 14 49 49 H 0.96996 * 120.00448 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 1.4559 3.4903 -1.1003 7 6 3.5420 1.4443 0.1238 8 8 4.2251 1.8610 -0.7876 9 7 4.1260 0.9827 1.2473 10 6 5.5861 0.9850 1.3679 11 6 5.9862 0.4146 2.7300 12 1 5.6452 1.0795 3.5236 13 6 7.5048 0.2618 2.8006 14 6 7.9046 -0.5777 3.9853 15 6 9.2150 -0.4730 4.4362 16 6 9.6507 -1.2248 5.5072 17 6 8.7777 -2.0900 6.1406 18 6 7.4748 -2.1918 5.6987 19 6 7.0349 -1.4347 4.6212 20 6 5.5951 -1.5841 4.1977 21 7 5.3885 -0.9193 2.9066 22 6 4.6682 -1.5150 1.9060 23 1 4.8714 -1.2690 0.8742 24 6 3.6768 -2.4354 2.2177 25 7 3.2697 -2.5679 3.4623 26 14 2.9207 -3.4859 0.8708 27 1 3.5473 -3.1466 -0.4321 28 1 3.1528 -4.9211 1.1734 29 1 1.4606 -3.2247 0.8003 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3769 3.9644 -0.7609 36 1 1.1724 3.9005 -2.0696 37 1 0.6618 3.6808 -0.3784 38 1 3.5797 0.6497 1.9763 39 1 5.9564 2.0063 1.2791 40 1 6.0170 0.3721 0.5762 41 1 7.8599 -0.2151 1.8871 42 1 7.9606 1.2479 2.8899 43 1 9.8980 0.2036 3.9441 44 1 10.6699 -1.1347 5.8530 45 1 9.1143 -2.6833 6.9778 46 1 6.7918 -2.8652 6.1948 47 1 5.3528 -2.6426 4.1035 48 1 4.9476 -1.1297 4.9475 49 1 2.5773 -3.2112 3.6802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717244078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:29 Heat of formation + Delta-G solvation = -52.509958 kcal Electronic energy + Delta-G solvation = -30039.000395 eV Core-core repulsion = 26158.840143 eV Total energy + Delta-G solvation = -3880.160253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19226 -40.57487 -38.70204 -37.84723 -35.40314 -34.80214 -34.15948 -32.94742 -31.74924 -30.54354 -28.92439 -27.42079 -27.31137 -26.01668 -24.52929 -23.09877 -22.87995 -22.47458 -21.26077 -20.58376 -18.81670 -18.07563 -17.80761 -17.58135 -16.96512 -16.55232 -16.29205 -15.99202 -15.95680 -15.71478 -15.39994 -15.18688 -15.01542 -14.87245 -14.57652 -14.33919 -14.03611 -13.78619 -13.67521 -13.42117 -13.24214 -13.10139 -13.00803 -12.71226 -12.62453 -12.53159 -12.44552 -12.25509 -12.14877 -12.03853 -11.85930 -11.75628 -11.59723 -11.52872 -11.27328 -10.64747 -10.23308 -9.85314 -9.52793 -9.25133 -8.66254 -7.85594 -5.28279 0.59644 0.63820 1.38727 1.47374 1.52681 1.63843 2.25666 2.47642 2.85295 2.99409 3.32653 3.50991 3.78765 3.84408 3.91324 3.92542 4.11808 4.23898 4.25520 4.32918 4.40288 4.41404 4.45420 4.50618 4.53793 4.57721 4.67328 4.72724 4.80250 4.82540 4.83819 4.92690 4.92914 5.08949 5.11295 5.21696 5.24013 5.28277 5.34902 5.44038 5.53814 5.60661 5.71146 5.72847 5.76110 6.02963 6.05537 6.28752 6.36923 6.72665 7.16626 7.33679 7.81944 8.37840 9.21604 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.004149 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.138699 B = 6747.227109 C = 8210.450103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.086 3.914 4 H 0.110 0.890 5 O -0.379 6.379 6 C 0.025 3.975 7 C 0.482 3.518 8 O -0.586 6.586 9 N -0.689 5.689 10 C 0.141 3.859 11 C 0.161 3.839 12 H 0.046 0.954 13 C -0.085 4.085 14 C -0.083 4.083 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.107 4.107 20 C 0.223 3.777 21 N -0.599 5.599 22 C -0.229 4.229 23 H 0.060 0.940 24 C -0.021 4.021 25 N -0.922 5.922 26 Si 0.922 3.078 27 H -0.285 1.285 28 H -0.302 1.302 29 H -0.273 1.273 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.413 0.587 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.115 0.885 47 H 0.061 0.939 48 H 0.018 0.982 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 8.251 2.487 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.025 3.975 4 H 0.128 0.872 5 O -0.296 6.296 6 C -0.071 4.071 7 C 0.268 3.732 8 O -0.467 6.467 9 N -0.340 5.340 10 C 0.017 3.983 11 C 0.054 3.946 12 H 0.064 0.936 13 C -0.124 4.124 14 C -0.084 4.084 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.109 4.109 20 C 0.098 3.902 21 N -0.322 5.322 22 C -0.359 4.359 23 H 0.078 0.922 24 C -0.218 4.218 25 N -0.568 5.568 26 Si 0.752 3.248 27 H -0.210 1.210 28 H -0.230 1.230 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.251 0.749 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.133 0.867 47 H 0.080 0.920 48 H 0.035 0.965 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.617 8.354 1.702 8.919 hybrid contribution -0.651 -1.219 -0.153 1.390 sum 1.966 7.135 1.549 7.562 Atomic orbital electron populations 1.21656 0.92697 1.02165 1.03085 1.21610 0.98756 0.92802 1.02689 1.22039 0.89437 0.96457 0.89578 0.87247 1.87939 1.88060 1.22391 1.31236 1.23023 0.99957 0.80030 1.04120 1.21762 0.92215 0.77271 0.81972 1.90607 1.66235 1.49648 1.40208 1.45993 1.08034 1.61528 1.18491 1.21211 0.80628 0.99746 0.96761 1.20826 0.92496 0.86877 0.94357 0.93624 1.20829 0.96518 0.99369 0.95680 1.19645 0.94058 0.97535 0.97138 1.21433 0.94800 1.00619 0.97744 1.21322 1.00550 0.96775 0.96322 1.21303 0.93028 0.99515 1.00691 1.21231 0.97165 1.00047 0.97130 1.20797 0.97896 0.96258 0.95940 1.19359 0.87311 0.97519 0.86057 1.44161 1.60758 1.14245 1.13087 1.19093 1.09760 1.19630 0.87400 0.92218 1.25263 0.97751 1.01987 0.96795 1.70055 1.31539 1.37771 1.17457 0.85932 0.79439 0.79117 0.80287 1.21029 1.22961 1.19896 0.91286 0.92733 0.91030 0.93031 0.90298 0.94920 0.87913 0.91599 0.74909 0.90587 0.93740 0.91601 0.88695 0.84315 0.83481 0.84014 0.86670 0.92034 0.96470 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.81 71.98 0.71 -3.01 16 2 C -0.12 -4.03 5.61 30.60 0.17 -3.86 16 3 C 0.09 2.74 2.52 29.85 0.08 2.81 16 4 H 0.11 2.82 7.79 -2.39 -0.02 2.80 16 5 O -0.38 -12.03 9.42 -129.99 -1.22 -13.26 16 6 C 0.02 0.57 10.81 113.37 1.23 1.80 16 7 C 0.48 18.32 7.13 87.66 0.63 18.95 16 8 O -0.59 -26.05 16.51 15.98 0.26 -25.79 16 9 N -0.69 -25.61 3.90 -463.07 -1.81 -27.41 16 10 C 0.14 5.09 4.45 86.38 0.38 5.48 16 11 C 0.16 5.86 3.02 44.78 0.14 6.00 16 12 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 13 C -0.08 -2.71 5.21 29.75 0.16 -2.56 16 14 C -0.08 -2.83 5.76 -19.85 -0.11 -2.94 16 15 C -0.13 -3.52 9.59 22.37 0.21 -3.31 16 16 C -0.13 -3.28 10.04 22.20 0.22 -3.06 16 17 C -0.13 -3.45 10.05 22.21 0.22 -3.23 16 18 C -0.14 -4.62 9.62 22.35 0.22 -4.40 16 19 C -0.11 -4.12 5.82 -19.82 -0.12 -4.23 16 20 C 0.22 10.04 4.81 85.64 0.41 10.45 16 21 N -0.60 -26.52 2.85 -680.32 -1.94 -28.46 16 22 C -0.23 -11.11 7.00 84.03 0.59 -10.52 16 23 H 0.06 3.06 6.15 -2.91 -0.02 3.04 16 24 C -0.02 -1.07 5.07 84.86 0.43 -0.64 16 25 N -0.92 -48.19 11.05 21.65 0.24 -47.95 16 26 Si 0.92 42.56 28.84 68.60 1.98 44.54 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 28 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 29 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 30 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.08 2.95 7.02 -2.39 -0.02 2.93 16 35 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 38 H 0.41 15.86 7.05 -92.71 -0.65 15.20 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.04 1.81 7.31 -2.39 -0.02 1.79 16 41 H 0.07 2.22 8.01 -2.39 -0.02 2.20 16 42 H 0.09 2.42 8.11 -2.38 -0.02 2.40 16 43 H 0.14 3.01 8.05 -2.91 -0.02 2.99 16 44 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 46 H 0.12 3.78 8.05 -2.91 -0.02 3.76 16 47 H 0.06 3.17 6.42 -2.38 -0.02 3.16 16 48 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16 Total: -1.00 -62.31 389.64 3.35 -58.96 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.28 Total: 35.64 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 5.55 Total: 3.73 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -3.51 Total: -103.82 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.96 Total: -39.04 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.98 Total: 44.54 kcal Total: -62.31 3.35 -58.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717244078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.450 kcal (2) G-P(sol) polarization free energy of solvation -62.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds