Wall clock time and date at job start Tue Mar 31 2020 16:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47016 * 2 1 4 4 H 1.08999 * 109.46979 * 304.71761 * 3 2 1 5 5 O 1.42901 * 109.46777 * 64.71436 * 3 2 1 6 6 C 1.42900 * 113.99515 * 213.81422 * 5 3 2 7 7 C 1.50698 * 109.47199 * 184.71709 * 3 2 1 8 8 O 1.21286 * 120.00011 * 245.00094 * 7 3 2 9 9 N 1.34772 * 119.99798 * 64.99550 * 7 3 2 10 10 C 1.46506 * 119.99686 * 179.97438 * 9 7 3 11 11 C 1.52999 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.81707 * 294.22622 * 11 10 9 13 13 C 1.52794 * 109.77580 * 173.44655 * 11 10 9 14 14 C 1.50599 * 110.85220 * 192.92244 * 13 11 10 15 15 C 1.38981 * 117.61851 * 199.69521 * 14 13 11 16 16 C 1.37911 * 120.58129 * 180.71534 * 15 14 13 17 17 C 1.38260 * 119.82656 * 359.92243 * 16 15 14 18 18 C 1.37953 * 119.72120 * 359.80513 * 17 16 15 19 19 C 1.37676 * 122.86470 * 20.02620 * 14 13 11 20 20 C 1.50813 * 122.34494 * 358.79393 * 19 14 13 21 21 N 1.46680 * 109.68329 * 11.35593 * 20 19 14 22 22 C 1.36933 * 121.34081 * 135.67204 * 21 20 19 23 23 H 1.08006 * 120.00004 * 209.00420 * 22 21 20 24 24 C 1.38810 * 120.00131 * 29.00009 * 22 21 20 25 25 N 1.31616 * 119.99853 * 9.92890 * 24 22 21 26 26 Si 1.86797 * 120.00347 * 189.93404 * 24 22 21 27 27 H 1.48500 * 109.46952 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47643 * 119.99535 * 26 24 22 29 29 H 1.48500 * 109.47194 * 240.00288 * 26 24 22 30 30 H 1.09004 * 109.46647 * 184.76770 * 1 2 3 31 31 H 1.08996 * 109.47361 * 304.76116 * 1 2 3 32 32 H 1.08997 * 109.47506 * 64.76754 * 1 2 3 33 33 H 1.09000 * 109.47252 * 239.99697 * 2 1 3 34 34 H 1.08998 * 109.47192 * 120.00017 * 2 1 3 35 35 H 1.09005 * 109.47392 * 304.95482 * 6 5 3 36 36 H 1.08994 * 109.47218 * 64.96067 * 6 5 3 37 37 H 1.09000 * 109.46859 * 184.96047 * 6 5 3 38 38 H 0.96998 * 120.00682 * 0.02562 * 9 7 3 39 39 H 1.08998 * 109.47134 * 60.00700 * 10 9 7 40 40 H 1.09002 * 109.47172 * 300.00425 * 10 9 7 41 41 H 1.08999 * 109.19890 * 313.27788 * 13 11 10 42 42 H 1.08995 * 109.19788 * 72.56800 * 13 11 10 43 43 H 1.07997 * 119.70271 * 0.75680 * 15 14 13 44 44 H 1.07997 * 120.08140 * 180.20564 * 16 15 14 45 45 H 1.08003 * 120.13767 * 179.81699 * 17 16 15 46 46 H 1.07997 * 119.74967 * 180.17493 * 18 17 16 47 47 H 1.09001 * 109.43514 * 131.42125 * 20 19 14 48 48 H 1.08996 * 109.43554 * 251.28790 * 20 19 14 49 49 H 0.97003 * 120.00127 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6093 1.9802 -0.8447 5 8 1.6562 2.0834 1.2182 6 6 1.3672 3.4757 1.0765 7 6 3.5424 1.4442 -0.1168 8 8 4.2213 1.8625 0.7970 9 7 4.1317 0.9808 -1.2368 10 6 5.5923 0.9829 -1.3506 11 6 5.9988 0.4103 -2.7099 12 1 5.7217 -0.6424 -2.7653 13 6 7.5072 0.5586 -2.9032 14 6 7.8921 0.2993 -4.3359 15 6 9.2194 -0.0179 -4.5991 16 6 9.6419 -0.2525 -5.8908 17 6 8.7387 -0.1738 -6.9347 18 6 7.4194 0.1353 -6.6758 19 6 6.9927 0.3708 -5.3758 20 6 5.5346 0.6906 -5.1610 21 7 5.3289 1.1590 -3.7863 22 6 4.5449 2.2483 -3.5148 23 1 4.7489 2.8576 -2.6467 24 6 3.4881 2.5697 -4.3554 25 7 3.1160 1.7277 -5.2961 26 14 2.5940 4.1971 -4.1516 27 1 3.2007 4.9581 -3.0300 28 1 2.7091 4.9856 -5.4047 29 1 1.1610 3.9412 -3.8576 30 1 -0.3633 -1.0242 0.0854 31 1 -0.3634 0.5859 0.8442 32 1 -0.3634 0.4381 -0.9296 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2206 3.9796 0.6226 36 1 0.4906 3.6019 0.4411 37 1 1.1700 3.9075 2.0576 38 1 3.5888 0.6465 -1.9679 39 1 6.0196 0.3713 -0.5560 40 1 5.9622 2.0044 -1.2617 41 1 7.8059 1.5704 -2.6292 42 1 8.0228 -0.1534 -2.2589 43 1 9.9260 -0.0818 -3.7849 44 1 10.6744 -0.5017 -6.0858 45 1 9.0647 -0.3537 -7.9485 46 1 6.7130 0.1942 -7.4906 47 1 5.2274 1.4692 -5.8592 48 1 4.9378 -0.2052 -5.3322 49 1 2.3777 1.9524 -5.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717244080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:36 Heat of formation + Delta-G solvation = -40.646057 kcal Electronic energy + Delta-G solvation = -29894.047332 eV Core-core repulsion = 26014.401536 eV Total energy + Delta-G solvation = -3879.645795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.71978 -39.21834 -37.37043 -36.35530 -33.89116 -33.31569 -32.82356 -31.45530 -30.29460 -29.05309 -27.75574 -26.18780 -25.65208 -24.71111 -22.87925 -21.92234 -21.57499 -21.04743 -19.79054 -19.08059 -17.29650 -16.75324 -16.27098 -16.10527 -15.42537 -15.37542 -14.86522 -14.55447 -14.42909 -14.27041 -14.10837 -13.80336 -13.70333 -13.48066 -13.08324 -12.93389 -12.63511 -12.51881 -12.34565 -12.13145 -11.83897 -11.66463 -11.61342 -11.38388 -11.16228 -11.01707 -10.97586 -10.89481 -10.75010 -10.60677 -10.54441 -10.23923 -10.20839 -10.05445 -9.74999 -8.84876 -8.80912 -8.30255 -8.23884 -7.88507 -6.86015 -5.98639 -3.43590 1.84153 1.91754 3.16303 3.21180 3.31833 3.33973 3.58421 4.11622 4.26285 4.30281 5.01180 5.07704 5.11401 5.16681 5.23265 5.30863 5.33735 5.40300 5.44541 5.48575 5.54994 5.60220 5.69268 5.69580 5.83702 5.87760 5.88598 5.91867 6.01881 6.04817 6.06277 6.14831 6.16695 6.28157 6.33886 6.35688 6.52673 6.59880 6.78646 6.91906 6.93079 7.10054 7.11604 7.15708 7.23512 7.46876 7.60338 7.66578 8.19950 8.26813 8.86820 9.01242 9.60290 10.19807 11.10177 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.003979 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.940529 B = 7035.092576 C = 8032.103801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.073 3.927 4 H 0.088 0.912 5 O -0.360 6.360 6 C 0.030 3.970 7 C 0.487 3.513 8 O -0.551 6.551 9 N -0.691 5.691 10 C 0.137 3.863 11 C 0.158 3.842 12 H 0.043 0.957 13 C -0.091 4.091 14 C -0.067 4.067 15 C -0.128 4.128 16 C -0.140 4.140 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.077 4.077 20 C 0.208 3.792 21 N -0.588 5.588 22 C -0.244 4.244 23 H 0.071 0.929 24 C 0.008 3.992 25 N -0.903 5.903 26 Si 0.891 3.109 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.288 1.288 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.416 0.584 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.043 0.957 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -4.302 3.034 5.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.011 3.989 4 H 0.105 0.895 5 O -0.277 6.277 6 C -0.066 4.066 7 C 0.272 3.728 8 O -0.430 6.430 9 N -0.344 5.344 10 C 0.012 3.988 11 C 0.051 3.949 12 H 0.060 0.940 13 C -0.130 4.130 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.158 4.158 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.079 4.079 20 C 0.083 3.917 21 N -0.312 5.312 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.191 4.191 25 N -0.548 5.548 26 Si 0.721 3.279 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.215 1.215 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.254 0.746 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.113 0.887 48 H 0.060 0.940 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.706 -4.056 3.759 5.787 hybrid contribution -0.511 1.040 -0.859 1.442 sum 1.195 -3.016 2.900 4.352 Atomic orbital electron populations 1.21723 0.94834 1.01823 1.02258 1.21571 0.97003 0.93293 1.03381 1.22091 0.91751 0.96078 0.88939 0.89463 1.87911 1.87337 1.22084 1.30360 1.22816 0.99275 0.82260 1.02285 1.21105 0.90765 0.78341 0.82595 1.90638 1.65393 1.47485 1.39485 1.45949 1.07847 1.62753 1.17804 1.21226 0.80600 1.01089 0.95840 1.20726 0.90893 0.95073 0.88236 0.93965 1.20884 0.98170 1.01508 0.92440 1.19483 0.92719 0.99196 0.95366 1.21130 0.95518 1.01414 0.96510 1.20851 0.98915 1.02927 0.93133 1.20951 0.93870 1.01637 0.98395 1.21114 0.95685 1.00759 0.96650 1.21011 0.99190 0.95623 0.92075 1.19772 0.85191 0.99190 0.87570 1.44028 1.55653 1.31862 0.99634 1.19150 1.05477 1.01913 1.10757 0.91121 1.25049 0.96821 0.97938 0.99294 1.69953 1.29057 1.34359 1.21385 0.86374 0.79503 0.84057 0.77954 1.20215 1.21361 1.21452 0.92472 0.92035 0.92576 0.89876 0.90794 0.93667 0.94141 0.89665 0.74647 0.92473 0.91692 0.90829 0.91843 0.87085 0.87125 0.86998 0.86482 0.88653 0.93962 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.86 37.16 0.37 -1.39 16 2 C -0.11 -1.56 5.61 -26.73 -0.15 -1.71 16 3 C 0.07 1.19 2.53 -27.88 -0.07 1.12 16 4 H 0.09 1.41 7.78 -51.93 -0.40 1.01 16 5 O -0.36 -5.98 9.33 -55.09 -0.51 -6.50 16 6 C 0.03 0.43 10.80 101.05 1.09 1.52 16 7 C 0.49 9.28 7.17 -10.99 -0.08 9.20 16 8 O -0.55 -12.22 16.51 -14.31 -0.24 -12.46 16 9 N -0.69 -12.77 3.93 -60.29 -0.24 -13.01 16 10 C 0.14 2.48 4.46 -4.04 -0.02 2.46 16 11 C 0.16 2.90 3.02 -67.63 -0.20 2.70 16 12 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 13 C -0.09 -1.51 5.21 -28.04 -0.15 -1.66 16 14 C -0.07 -1.19 5.76 -104.60 -0.60 -1.79 16 15 C -0.13 -1.97 9.59 -39.43 -0.38 -2.35 16 16 C -0.14 -2.03 10.04 -39.69 -0.40 -2.43 16 17 C -0.13 -1.95 10.05 -39.68 -0.40 -2.35 16 18 C -0.12 -2.11 9.62 -39.46 -0.38 -2.49 16 19 C -0.08 -1.48 5.82 -104.55 -0.61 -2.08 16 20 C 0.21 4.50 4.79 -5.04 -0.02 4.47 16 21 N -0.59 -12.72 2.85 -166.38 -0.47 -13.19 16 22 C -0.24 -5.75 6.92 -15.06 -0.10 -5.86 16 23 H 0.07 1.75 6.23 -52.48 -0.33 1.42 16 24 C 0.01 0.19 5.10 -17.43 -0.09 0.11 16 25 N -0.90 -22.87 11.08 55.49 0.61 -22.25 16 26 Si 0.89 20.03 29.56 -169.99 -5.03 15.01 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.09 7.78 -51.93 -0.40 0.69 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.42 7.90 7.05 -40.82 -0.29 7.61 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.29 7.31 -51.93 -0.38 0.91 16 41 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 42 H 0.06 0.91 8.11 -51.93 -0.42 0.48 16 43 H 0.11 1.47 8.05 -52.49 -0.42 1.04 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 46 H 0.12 1.87 8.05 -52.49 -0.42 1.45 16 47 H 0.10 2.32 6.50 -51.93 -0.34 1.98 16 48 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -27.97 391.19 -10.18 -38.15 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.01 Total: 10.90 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.19 Total: -2.53 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.10 Total: -48.46 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.75 Total: -18.95 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -27.97 -10.18 -38.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717244080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.500 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds