Wall clock time and date at job start Tue Mar 31 2020 16:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47016 * 2 1 4 4 H 1.08999 * 109.46979 * 304.71761 * 3 2 1 5 5 O 1.42901 * 109.46777 * 64.71436 * 3 2 1 6 6 C 1.42900 * 113.99515 * 213.81422 * 5 3 2 7 7 C 1.50698 * 109.47199 * 184.71709 * 3 2 1 8 8 O 1.21286 * 120.00011 * 245.00094 * 7 3 2 9 9 N 1.34772 * 119.99798 * 64.99550 * 7 3 2 10 10 C 1.46506 * 119.99686 * 179.97438 * 9 7 3 11 11 C 1.52999 * 109.47146 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.81707 * 294.22622 * 11 10 9 13 13 C 1.52794 * 109.77580 * 173.44655 * 11 10 9 14 14 C 1.50599 * 110.85220 * 192.92244 * 13 11 10 15 15 C 1.38981 * 117.61851 * 199.69521 * 14 13 11 16 16 C 1.37911 * 120.58129 * 180.71534 * 15 14 13 17 17 C 1.38260 * 119.82656 * 359.92243 * 16 15 14 18 18 C 1.37953 * 119.72120 * 359.80513 * 17 16 15 19 19 C 1.37676 * 122.86470 * 20.02620 * 14 13 11 20 20 C 1.50813 * 122.34494 * 358.79393 * 19 14 13 21 21 N 1.46680 * 109.68329 * 11.35593 * 20 19 14 22 22 C 1.36933 * 121.34081 * 135.67204 * 21 20 19 23 23 H 1.08006 * 120.00004 * 209.00420 * 22 21 20 24 24 C 1.38810 * 120.00131 * 29.00009 * 22 21 20 25 25 N 1.31616 * 119.99853 * 9.92890 * 24 22 21 26 26 Si 1.86797 * 120.00347 * 189.93404 * 24 22 21 27 27 H 1.48500 * 109.46952 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47643 * 119.99535 * 26 24 22 29 29 H 1.48500 * 109.47194 * 240.00288 * 26 24 22 30 30 H 1.09004 * 109.46647 * 184.76770 * 1 2 3 31 31 H 1.08996 * 109.47361 * 304.76116 * 1 2 3 32 32 H 1.08997 * 109.47506 * 64.76754 * 1 2 3 33 33 H 1.09000 * 109.47252 * 239.99697 * 2 1 3 34 34 H 1.08998 * 109.47192 * 120.00017 * 2 1 3 35 35 H 1.09005 * 109.47392 * 304.95482 * 6 5 3 36 36 H 1.08994 * 109.47218 * 64.96067 * 6 5 3 37 37 H 1.09000 * 109.46859 * 184.96047 * 6 5 3 38 38 H 0.96998 * 120.00682 * 0.02562 * 9 7 3 39 39 H 1.08998 * 109.47134 * 60.00700 * 10 9 7 40 40 H 1.09002 * 109.47172 * 300.00425 * 10 9 7 41 41 H 1.08999 * 109.19890 * 313.27788 * 13 11 10 42 42 H 1.08995 * 109.19788 * 72.56800 * 13 11 10 43 43 H 1.07997 * 119.70271 * 0.75680 * 15 14 13 44 44 H 1.07997 * 120.08140 * 180.20564 * 16 15 14 45 45 H 1.08003 * 120.13767 * 179.81699 * 17 16 15 46 46 H 1.07997 * 119.74967 * 180.17493 * 18 17 16 47 47 H 1.09001 * 109.43514 * 131.42125 * 20 19 14 48 48 H 1.08996 * 109.43554 * 251.28790 * 20 19 14 49 49 H 0.97003 * 120.00127 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6093 1.9802 -0.8447 5 8 1.6562 2.0834 1.2182 6 6 1.3672 3.4757 1.0765 7 6 3.5424 1.4442 -0.1168 8 8 4.2213 1.8625 0.7970 9 7 4.1317 0.9808 -1.2368 10 6 5.5923 0.9829 -1.3506 11 6 5.9988 0.4103 -2.7099 12 1 5.7217 -0.6424 -2.7653 13 6 7.5072 0.5586 -2.9032 14 6 7.8921 0.2993 -4.3359 15 6 9.2194 -0.0179 -4.5991 16 6 9.6419 -0.2525 -5.8908 17 6 8.7387 -0.1738 -6.9347 18 6 7.4194 0.1353 -6.6758 19 6 6.9927 0.3708 -5.3758 20 6 5.5346 0.6906 -5.1610 21 7 5.3289 1.1590 -3.7863 22 6 4.5449 2.2483 -3.5148 23 1 4.7489 2.8576 -2.6467 24 6 3.4881 2.5697 -4.3554 25 7 3.1160 1.7277 -5.2961 26 14 2.5940 4.1971 -4.1516 27 1 3.2007 4.9581 -3.0300 28 1 2.7091 4.9856 -5.4047 29 1 1.1610 3.9412 -3.8576 30 1 -0.3633 -1.0242 0.0854 31 1 -0.3634 0.5859 0.8442 32 1 -0.3634 0.4381 -0.9296 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2206 3.9796 0.6226 36 1 0.4906 3.6019 0.4411 37 1 1.1700 3.9075 2.0576 38 1 3.5888 0.6465 -1.9679 39 1 6.0196 0.3713 -0.5560 40 1 5.9622 2.0044 -1.2617 41 1 7.8059 1.5704 -2.6292 42 1 8.0228 -0.1534 -2.2589 43 1 9.9260 -0.0818 -3.7849 44 1 10.6744 -0.5017 -6.0858 45 1 9.0647 -0.3537 -7.9485 46 1 6.7130 0.1942 -7.4906 47 1 5.2274 1.4692 -5.8592 48 1 4.9378 -0.2052 -5.3322 49 1 2.3777 1.9524 -5.8838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717244080.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:35 Heat of formation + Delta-G solvation = -54.495265 kcal Electronic energy + Delta-G solvation = -29894.647879 eV Core-core repulsion = 26014.401536 eV Total energy + Delta-G solvation = -3880.246342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.18363 -40.57887 -38.72785 -37.85829 -35.41831 -34.73144 -34.19729 -32.95510 -31.75387 -30.54974 -28.95810 -27.45748 -27.33136 -26.02009 -24.53338 -23.09958 -22.89062 -22.44686 -21.26726 -20.59285 -18.81896 -18.08307 -17.82999 -17.61666 -16.83979 -16.70819 -16.26151 -16.09295 -15.90070 -15.74345 -15.42221 -15.17831 -15.06424 -14.82709 -14.58634 -14.33437 -14.04761 -13.79169 -13.68075 -13.38582 -13.26482 -13.13484 -12.94118 -12.79785 -12.62298 -12.56341 -12.48399 -12.27763 -12.15396 -12.07505 -11.87969 -11.73987 -11.60268 -11.55332 -11.28639 -10.67410 -10.26008 -9.85580 -9.53186 -9.25746 -8.65455 -7.87353 -5.32579 0.59366 0.63474 1.36928 1.45074 1.50237 1.65711 2.20090 2.45755 2.84078 2.99122 3.30664 3.50277 3.75473 3.84279 3.90719 3.97471 4.11501 4.23454 4.25066 4.34217 4.39896 4.41178 4.41986 4.45384 4.50006 4.57239 4.67701 4.72414 4.74258 4.82040 4.85723 4.92475 4.92642 5.07159 5.13592 5.20870 5.23352 5.27918 5.38913 5.43412 5.52517 5.59928 5.70102 5.71293 5.75368 5.98076 6.02362 6.28369 6.36023 6.72157 7.14460 7.33315 7.79599 8.36691 9.19563 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.003979 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.940529 B = 7035.092576 C = 8032.103801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.075 3.925 4 H 0.087 0.913 5 O -0.372 6.372 6 C 0.025 3.975 7 C 0.484 3.516 8 O -0.586 6.586 9 N -0.688 5.688 10 C 0.141 3.859 11 C 0.160 3.840 12 H 0.045 0.955 13 C -0.085 4.085 14 C -0.083 4.083 15 C -0.128 4.128 16 C -0.132 4.132 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.108 4.108 20 C 0.224 3.776 21 N -0.599 5.599 22 C -0.231 4.231 23 H 0.059 0.941 24 C -0.029 4.029 25 N -0.923 5.923 26 Si 0.934 3.066 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.281 1.281 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.413 0.587 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.115 0.885 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.876 -5.308 3.353 6.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.014 3.986 4 H 0.105 0.895 5 O -0.289 6.289 6 C -0.072 4.072 7 C 0.270 3.730 8 O -0.467 6.467 9 N -0.340 5.340 10 C 0.017 3.983 11 C 0.054 3.946 12 H 0.063 0.937 13 C -0.124 4.124 14 C -0.084 4.084 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.109 4.109 20 C 0.099 3.901 21 N -0.323 5.323 22 C -0.361 4.361 23 H 0.077 0.923 24 C -0.225 4.225 25 N -0.569 5.569 26 Si 0.764 3.236 27 H -0.207 1.207 28 H -0.224 1.224 29 H -0.208 1.208 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.251 0.749 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.133 0.867 47 H 0.078 0.922 48 H 0.035 0.965 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.179 -5.073 4.080 7.245 hybrid contribution -0.847 1.345 -0.974 1.864 sum 2.332 -3.728 3.107 5.384 Atomic orbital electron populations 1.21693 0.93141 1.03074 1.02198 1.21587 0.98406 0.91338 1.03510 1.22161 0.89682 0.97803 0.88982 0.89513 1.87895 1.87217 1.23222 1.30568 1.22998 0.99076 0.81063 1.04016 1.21661 0.92002 0.77336 0.81964 1.90609 1.66463 1.49056 1.40583 1.45978 1.08041 1.62362 1.17582 1.21207 0.80552 1.00211 0.96315 1.20833 0.92008 0.94585 0.87151 0.93681 1.20826 0.96593 1.02019 0.92953 1.19647 0.93776 0.99827 0.95116 1.21435 0.94736 1.00339 0.98075 1.21321 1.00510 1.00732 0.92375 1.21304 0.92716 1.00179 1.00319 1.21230 0.97135 1.01339 0.95867 1.20791 0.97768 0.98574 0.93775 1.19335 0.87188 0.96783 0.86812 1.44150 1.55678 1.31839 1.00603 1.19082 1.05063 1.02145 1.09782 0.92324 1.25444 0.97749 0.99695 0.99643 1.70066 1.29449 1.35306 1.22092 0.85715 0.79115 0.81809 0.76982 1.20719 1.22364 1.20766 0.90576 0.92074 0.92631 0.89603 0.90765 0.95740 0.92307 0.87327 0.74924 0.90652 0.93671 0.91554 0.88697 0.84299 0.83459 0.83990 0.86671 0.92243 0.96525 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.86 71.98 0.71 -2.45 16 2 C -0.11 -2.92 5.61 30.60 0.17 -2.75 16 3 C 0.08 2.44 2.53 29.85 0.08 2.52 16 4 H 0.09 2.81 7.78 -2.39 -0.02 2.79 16 5 O -0.37 -12.16 9.33 -129.99 -1.21 -13.37 16 6 C 0.02 0.68 10.80 113.37 1.22 1.91 16 7 C 0.48 18.63 7.17 87.66 0.63 19.26 16 8 O -0.59 -26.30 16.51 15.94 0.26 -26.03 16 9 N -0.69 -25.81 3.93 -463.05 -1.82 -27.63 16 10 C 0.14 5.15 4.46 86.38 0.38 5.53 16 11 C 0.16 5.89 3.02 44.78 0.14 6.03 16 12 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 13 C -0.08 -2.72 5.21 29.75 0.16 -2.57 16 14 C -0.08 -2.83 5.76 -19.85 -0.11 -2.94 16 15 C -0.13 -3.52 9.59 22.37 0.21 -3.30 16 16 C -0.13 -3.27 10.04 22.20 0.22 -3.04 16 17 C -0.13 -3.44 10.05 22.21 0.22 -3.22 16 18 C -0.14 -4.62 9.62 22.35 0.22 -4.40 16 19 C -0.11 -4.13 5.82 -19.82 -0.12 -4.24 16 20 C 0.22 10.13 4.79 85.63 0.41 10.54 16 21 N -0.60 -26.63 2.85 -680.31 -1.94 -28.57 16 22 C -0.23 -11.21 6.92 84.03 0.58 -10.63 16 23 H 0.06 2.99 6.23 -2.91 -0.02 2.97 16 24 C -0.03 -1.44 5.10 84.86 0.43 -1.01 16 25 N -0.92 -48.48 11.08 21.65 0.24 -48.24 16 26 Si 0.93 42.08 29.56 68.60 2.03 44.11 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 28 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 29 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.35 7.69 -2.39 -0.02 1.33 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 2.20 7.78 -2.39 -0.02 2.18 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.41 16.03 7.05 -92.71 -0.65 15.38 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.04 1.83 7.31 -2.39 -0.02 1.81 16 41 H 0.07 2.23 8.01 -2.39 -0.02 2.21 16 42 H 0.09 2.43 8.11 -2.39 -0.02 2.41 16 43 H 0.14 3.02 8.05 -2.91 -0.02 2.99 16 44 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.12 3.77 8.05 -2.91 -0.02 3.75 16 47 H 0.06 3.07 6.50 -2.39 -0.02 3.05 16 48 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.25 12.97 8.31 -92.71 -0.77 12.20 16 Total: -1.00 -62.05 391.19 3.40 -58.65 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.28 Total: 35.85 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 5.56 Total: 5.23 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -3.52 Total: -104.44 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.95 Total: -39.40 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -62.05 3.40 -58.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717244080.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.159 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds