Wall clock time and date at job start Tue Mar 31 2020 16:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47247 * 2 1 4 4 C 1.42898 * 114.00293 * 181.56884 * 3 2 1 5 5 H 1.09002 * 109.47166 * 329.43244 * 4 3 2 6 6 C 1.53002 * 109.47415 * 209.42945 * 4 3 2 7 7 C 1.52995 * 109.46989 * 65.27959 * 6 4 3 8 8 C 1.50701 * 109.47257 * 89.42755 * 4 3 2 9 9 O 1.21276 * 120.00449 * 4.99965 * 8 4 3 10 10 N 1.34775 * 120.00006 * 185.00303 * 8 4 3 11 11 C 1.46501 * 120.00521 * 180.02562 * 10 8 4 12 12 H 1.09000 * 110.72228 * 31.59107 * 11 10 8 13 13 C 1.54349 * 110.82331 * 267.97423 * 11 10 8 14 14 C 1.51363 * 105.16976 * 215.42190 * 13 11 10 15 15 C 1.38497 * 130.38894 * 197.16886 * 14 13 11 16 16 C 1.38103 * 120.21416 * 180.02562 * 15 14 13 17 17 C 1.38250 * 119.93702 * 359.97305 * 16 15 14 18 18 C 1.38107 * 119.93230 * 0.02562 * 17 16 15 19 19 C 1.38224 * 109.75924 * 17.19388 * 14 13 11 20 20 C 1.51364 * 109.75626 * 359.97438 * 19 14 13 21 21 H 1.09001 * 110.38704 * 101.78828 * 20 19 14 22 22 N 1.46501 * 110.30053 * 223.89685 * 20 19 14 23 23 C 1.36938 * 120.00280 * 270.74832 * 22 20 19 24 24 H 1.08002 * 119.99929 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00456 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00330 * 180.02562 * 25 23 22 27 27 Si 1.86809 * 119.99759 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.46731 * 90.00391 * 27 25 23 29 29 H 1.48494 * 109.47149 * 210.00363 * 27 25 23 30 30 H 1.48497 * 109.47002 * 330.00396 * 27 25 23 31 31 H 1.08997 * 109.47386 * 59.99946 * 1 2 3 32 32 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47072 * 300.00061 * 1 2 3 34 34 H 1.09002 * 109.47468 * 119.99574 * 2 1 3 35 35 H 1.09002 * 109.47290 * 239.99448 * 2 1 3 36 36 H 1.08999 * 109.46903 * 185.28245 * 6 4 3 37 37 H 1.08994 * 109.46750 * 305.27980 * 6 4 3 38 38 H 1.08999 * 109.47311 * 54.71284 * 7 6 4 39 39 H 1.08999 * 109.47253 * 174.71284 * 7 6 4 40 40 H 1.08999 * 109.47382 * 294.71459 * 7 6 4 41 41 H 0.97006 * 119.99967 * 359.97438 * 10 8 4 42 42 H 1.09002 * 110.30211 * 334.35029 * 13 11 10 43 43 H 1.09005 * 110.30089 * 96.49659 * 13 11 10 44 44 H 1.07996 * 119.89190 * 0.03179 * 15 14 13 45 45 H 1.07997 * 120.02987 * 179.97438 * 16 15 14 46 46 H 1.08000 * 120.03583 * 180.02562 * 17 16 15 47 47 H 1.08002 * 119.88943 * 180.02562 * 18 17 16 48 48 H 0.96994 * 120.00066 * 90.75028 * 22 20 19 49 49 H 0.97004 * 120.00068 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4304 1.4603 -0.0357 5 1 3.8757 0.6022 0.4678 6 6 3.8579 2.7465 0.6740 7 6 3.5026 2.6518 2.1591 8 6 3.8955 1.4988 -1.4687 9 8 3.0837 1.5273 -2.3692 10 7 5.2136 1.5016 -1.7495 11 6 5.6659 1.5397 -3.1424 12 1 4.9611 2.0945 -3.7617 13 6 5.8781 0.1121 -3.6896 14 6 7.0684 0.2169 -4.6186 15 6 7.5118 -0.6430 -5.6097 16 6 8.6418 -0.3359 -6.3418 17 6 9.3330 0.8336 -6.0858 18 6 8.8925 1.6924 -5.0980 19 6 7.7599 1.3860 -4.3622 20 6 7.0810 2.1471 -3.2437 21 1 7.6203 2.0066 -2.3069 22 7 7.0005 3.5720 -3.5743 23 6 8.0222 4.4146 -3.2257 24 1 8.8875 4.0285 -2.7074 25 6 7.9458 5.7648 -3.5385 26 7 8.9279 6.5745 -3.2038 27 14 6.4494 6.4324 -4.4356 28 1 5.4280 6.8584 -3.4454 29 1 6.8490 7.5964 -5.2666 30 1 5.8818 5.3731 -5.3078 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 4.9342 2.8807 0.5657 37 1 3.3394 3.5961 0.2298 38 1 3.9452 1.7497 2.5817 39 1 3.8904 3.5260 2.6820 40 1 2.4192 2.6120 2.2717 41 1 5.8630 1.4792 -1.0292 42 1 6.0946 -0.5774 -2.8736 43 1 4.9965 -0.2169 -4.2399 44 1 6.9720 -1.5566 -5.8106 45 1 8.9851 -1.0088 -7.1137 46 1 10.2167 1.0756 -6.6577 47 1 9.4328 2.6061 -4.8988 48 1 6.2236 3.9187 -4.0401 49 1 8.8746 7.5180 -3.4228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717359737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:05 Heat of formation + Delta-G solvation = -48.866877 kcal Electronic energy + Delta-G solvation = -29155.112033 eV Core-core repulsion = 25275.109756 eV Total energy + Delta-G solvation = -3880.002277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.42399 -39.51225 -37.68841 -36.12991 -34.33085 -33.92913 -32.64821 -31.37527 -30.98736 -30.06238 -28.42969 -26.71662 -26.27038 -23.15895 -22.75294 -22.45185 -21.79192 -20.72618 -20.52969 -19.97013 -17.95314 -17.50066 -17.13498 -16.09175 -15.77663 -15.45742 -15.19525 -14.94095 -14.65521 -14.34086 -14.19287 -14.01932 -13.96780 -13.56429 -12.98000 -12.88558 -12.68742 -12.67129 -12.58867 -12.53846 -12.27591 -12.11611 -12.06243 -11.92677 -11.50482 -11.29146 -11.17933 -11.07160 -10.89302 -10.87250 -10.66249 -10.46492 -10.41370 -10.20512 -9.66182 -9.26350 -9.11378 -8.88566 -8.38350 -8.17615 -7.40541 -5.86149 -3.22967 1.72438 1.82534 2.64862 3.07319 3.35626 3.40532 3.44150 3.57703 4.15436 4.53186 4.57701 4.65060 4.73631 4.80790 4.90375 4.93648 5.07841 5.12754 5.20571 5.25456 5.28112 5.33192 5.36479 5.43619 5.47851 5.48028 5.60310 5.63629 5.64417 5.76129 5.84292 5.85794 5.93354 5.97740 6.00497 6.04268 6.14939 6.16883 6.25261 6.39084 6.55009 6.65638 6.82333 6.94090 6.96485 7.16158 7.42814 7.59837 7.86872 8.30873 8.31857 9.08373 9.81680 9.99908 11.31160 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.004209 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.252089 B = 6651.497930 C = 8801.046784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.078 3.922 5 H 0.084 0.916 6 C -0.119 4.119 7 C -0.147 4.147 8 C 0.490 3.510 9 O -0.527 6.527 10 N -0.710 5.710 11 C 0.137 3.863 12 H 0.101 0.899 13 C -0.085 4.085 14 C -0.106 4.106 15 C -0.116 4.116 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.078 4.078 19 C -0.094 4.094 20 C 0.213 3.787 21 H 0.077 0.923 22 N -0.736 5.736 23 C -0.249 4.249 24 H 0.092 0.908 25 C 0.014 3.986 26 N -0.928 5.928 27 Si 0.878 3.122 28 H -0.283 1.283 29 H -0.290 1.290 30 H -0.276 1.276 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.402 0.598 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.132 0.868 48 H 0.365 0.635 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -16.671 6.414 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.271 6.271 4 C 0.017 3.983 5 H 0.102 0.898 6 C -0.157 4.157 7 C -0.204 4.204 8 C 0.275 3.725 9 O -0.403 6.403 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.119 0.881 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.097 4.097 19 C -0.098 4.098 20 C 0.102 3.898 21 H 0.095 0.905 22 N -0.377 5.377 23 C -0.378 4.378 24 H 0.110 0.890 25 C -0.183 4.183 26 N -0.575 5.575 27 Si 0.708 3.292 28 H -0.209 1.209 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.237 0.763 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.150 0.850 48 H 0.198 0.802 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.107 -16.323 5.893 19.598 hybrid contribution -0.393 0.358 -0.608 0.807 sum -9.500 -15.965 5.285 19.315 Atomic orbital electron populations 1.21703 0.93589 1.02076 1.03229 1.22547 0.95909 0.83783 0.99866 1.88008 1.18457 1.26460 1.94212 1.22080 0.83530 1.00631 0.92093 0.89816 1.21618 1.02088 0.95899 0.96086 1.21705 1.02223 1.01755 0.94705 1.21396 0.82601 0.76312 0.92185 1.90700 1.53340 1.48339 1.47887 1.45948 1.06989 1.74879 1.08475 1.21927 0.97138 0.95425 0.82419 0.88098 1.21327 0.96044 0.97335 0.97708 1.20429 0.97398 0.95830 0.97067 1.20454 0.97312 0.99198 0.96450 1.20900 0.96126 0.97621 1.00128 1.21078 1.00164 0.94874 0.98537 1.20864 0.95579 0.99156 0.94061 1.21549 0.94840 0.94730 0.98685 1.19894 0.90916 0.84313 0.94632 0.90492 1.42781 1.22596 1.02409 1.69931 1.19008 0.98146 0.88834 1.31850 0.88993 1.24615 0.97277 0.95992 1.00406 1.69690 1.31985 1.04238 1.51594 0.86651 0.83651 0.78758 0.80124 1.20931 1.21625 1.20221 0.91580 0.91241 0.91960 0.93510 0.93163 0.89532 0.90178 0.92869 0.92097 0.92028 0.76350 0.90213 0.90799 0.87097 0.86686 0.86449 0.85019 0.80187 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.57 6.44 37.16 0.24 0.81 16 3 O -0.35 -4.61 9.17 -55.09 -0.51 -5.11 16 4 C 0.08 0.91 2.51 -27.88 -0.07 0.84 16 5 H 0.08 0.74 7.81 -51.93 -0.41 0.33 16 6 C -0.12 -1.31 5.61 -26.73 -0.15 -1.46 16 7 C -0.15 -1.32 9.76 37.16 0.36 -0.96 16 8 C 0.49 7.24 7.12 -10.99 -0.08 7.16 16 9 O -0.53 -9.94 16.15 -14.30 -0.23 -10.17 16 10 N -0.71 -9.66 5.03 -52.45 -0.26 -9.93 16 11 C 0.14 2.19 3.13 -66.53 -0.21 1.98 16 12 H 0.10 1.89 7.22 -51.93 -0.37 1.51 16 13 C -0.09 -1.20 6.49 -26.85 -0.17 -1.38 16 14 C -0.11 -1.66 6.14 -104.21 -0.64 -2.30 16 15 C -0.12 -1.65 10.04 -39.54 -0.40 -2.05 16 16 C -0.13 -1.80 10.05 -39.63 -0.40 -2.20 16 17 C -0.13 -1.98 10.05 -39.63 -0.40 -2.38 16 18 C -0.08 -1.43 10.00 -39.54 -0.40 -1.82 16 19 C -0.09 -1.69 5.79 -104.21 -0.60 -2.29 16 20 C 0.21 3.88 3.23 -68.06 -0.22 3.66 16 21 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 22 N -0.74 -16.55 4.94 -53.55 -0.26 -16.81 16 23 C -0.25 -6.55 10.17 -15.06 -0.15 -6.71 16 24 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 25 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 26 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 27 Si 0.88 22.03 27.74 -169.99 -4.71 17.31 16 28 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.90 7.76 -51.93 -0.40 0.49 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.58 7.97 -51.93 -0.41 0.17 16 41 H 0.40 4.44 8.12 -40.82 -0.33 4.11 16 42 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.13 2.66 7.79 -52.49 -0.41 2.25 16 48 H 0.36 8.50 5.47 -40.82 -0.22 8.28 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.80 15.07 6.06 6.06 Total: -1.00 -32.81 401.80 -10.19 -43.00 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -8.05 Total: 12.69 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.00 Total: -9.75 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.25 Total: -54.02 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.74 Total: -15.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.81 -10.19 -43.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717359737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.866 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds