Wall clock time and date at job start Tue Mar 31 2020 16:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47247 * 2 1 4 4 C 1.42898 * 114.00293 * 181.56884 * 3 2 1 5 5 H 1.09002 * 109.47166 * 329.43244 * 4 3 2 6 6 C 1.53002 * 109.47415 * 209.42945 * 4 3 2 7 7 C 1.52995 * 109.46989 * 65.27959 * 6 4 3 8 8 C 1.50701 * 109.47257 * 89.42755 * 4 3 2 9 9 O 1.21276 * 120.00449 * 4.99965 * 8 4 3 10 10 N 1.34775 * 120.00006 * 185.00303 * 8 4 3 11 11 C 1.46501 * 120.00521 * 180.02562 * 10 8 4 12 12 H 1.09000 * 110.72228 * 31.59107 * 11 10 8 13 13 C 1.54349 * 110.82331 * 267.97423 * 11 10 8 14 14 C 1.51363 * 105.16976 * 215.42190 * 13 11 10 15 15 C 1.38497 * 130.38894 * 197.16886 * 14 13 11 16 16 C 1.38103 * 120.21416 * 180.02562 * 15 14 13 17 17 C 1.38250 * 119.93702 * 359.97305 * 16 15 14 18 18 C 1.38107 * 119.93230 * 0.02562 * 17 16 15 19 19 C 1.38224 * 109.75924 * 17.19388 * 14 13 11 20 20 C 1.51364 * 109.75626 * 359.97438 * 19 14 13 21 21 H 1.09001 * 110.38704 * 101.78828 * 20 19 14 22 22 N 1.46501 * 110.30053 * 223.89685 * 20 19 14 23 23 C 1.36938 * 120.00280 * 270.74832 * 22 20 19 24 24 H 1.08002 * 119.99929 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00456 * 180.02562 * 23 22 20 26 26 N 1.31616 * 120.00330 * 180.02562 * 25 23 22 27 27 Si 1.86809 * 119.99759 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.46731 * 90.00391 * 27 25 23 29 29 H 1.48494 * 109.47149 * 210.00363 * 27 25 23 30 30 H 1.48497 * 109.47002 * 330.00396 * 27 25 23 31 31 H 1.08997 * 109.47386 * 59.99946 * 1 2 3 32 32 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47072 * 300.00061 * 1 2 3 34 34 H 1.09002 * 109.47468 * 119.99574 * 2 1 3 35 35 H 1.09002 * 109.47290 * 239.99448 * 2 1 3 36 36 H 1.08999 * 109.46903 * 185.28245 * 6 4 3 37 37 H 1.08994 * 109.46750 * 305.27980 * 6 4 3 38 38 H 1.08999 * 109.47311 * 54.71284 * 7 6 4 39 39 H 1.08999 * 109.47253 * 174.71284 * 7 6 4 40 40 H 1.08999 * 109.47382 * 294.71459 * 7 6 4 41 41 H 0.97006 * 119.99967 * 359.97438 * 10 8 4 42 42 H 1.09002 * 110.30211 * 334.35029 * 13 11 10 43 43 H 1.09005 * 110.30089 * 96.49659 * 13 11 10 44 44 H 1.07996 * 119.89190 * 0.03179 * 15 14 13 45 45 H 1.07997 * 120.02987 * 179.97438 * 16 15 14 46 46 H 1.08000 * 120.03583 * 180.02562 * 17 16 15 47 47 H 1.08002 * 119.88943 * 180.02562 * 18 17 16 48 48 H 0.96994 * 120.00066 * 90.75028 * 22 20 19 49 49 H 0.97004 * 120.00068 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4304 1.4603 -0.0357 5 1 3.8757 0.6022 0.4678 6 6 3.8579 2.7465 0.6740 7 6 3.5026 2.6518 2.1591 8 6 3.8955 1.4988 -1.4687 9 8 3.0837 1.5273 -2.3692 10 7 5.2136 1.5016 -1.7495 11 6 5.6659 1.5397 -3.1424 12 1 4.9611 2.0945 -3.7617 13 6 5.8781 0.1121 -3.6896 14 6 7.0684 0.2169 -4.6186 15 6 7.5118 -0.6430 -5.6097 16 6 8.6418 -0.3359 -6.3418 17 6 9.3330 0.8336 -6.0858 18 6 8.8925 1.6924 -5.0980 19 6 7.7599 1.3860 -4.3622 20 6 7.0810 2.1471 -3.2437 21 1 7.6203 2.0066 -2.3069 22 7 7.0005 3.5720 -3.5743 23 6 8.0222 4.4146 -3.2257 24 1 8.8875 4.0285 -2.7074 25 6 7.9458 5.7648 -3.5385 26 7 8.9279 6.5745 -3.2038 27 14 6.4494 6.4324 -4.4356 28 1 5.4280 6.8584 -3.4454 29 1 6.8490 7.5964 -5.2666 30 1 5.8818 5.3731 -5.3078 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 4.9342 2.8807 0.5657 37 1 3.3394 3.5961 0.2298 38 1 3.9452 1.7497 2.5817 39 1 3.8904 3.5260 2.6820 40 1 2.4192 2.6120 2.2717 41 1 5.8630 1.4792 -1.0292 42 1 6.0946 -0.5774 -2.8736 43 1 4.9965 -0.2169 -4.2399 44 1 6.9720 -1.5566 -5.8106 45 1 8.9851 -1.0088 -7.1137 46 1 10.2167 1.0756 -6.6577 47 1 9.4328 2.6061 -4.8988 48 1 6.2236 3.9187 -4.0401 49 1 8.8746 7.5180 -3.4228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717359737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:04 Heat of formation + Delta-G solvation = -68.955068 kcal Electronic energy + Delta-G solvation = -29155.983123 eV Core-core repulsion = 25275.109756 eV Total energy + Delta-G solvation = -3880.873366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64877 -40.67979 -38.71426 -37.49160 -35.85923 -35.07081 -33.88385 -33.17691 -31.74879 -31.51726 -29.57900 -27.88079 -27.65269 -24.65731 -23.96567 -23.47130 -22.82785 -21.93909 -21.85901 -21.22254 -19.78609 -18.67065 -18.15436 -17.38293 -17.16642 -16.50347 -16.39998 -16.30271 -15.83364 -15.81554 -15.25821 -15.19322 -15.05018 -14.85720 -14.78859 -14.27523 -13.96024 -13.92338 -13.73694 -13.48425 -13.41553 -13.25706 -13.01063 -12.97670 -12.84369 -12.68433 -12.38986 -12.26827 -12.20291 -12.03744 -12.00817 -11.82465 -11.72850 -11.64501 -11.40018 -11.10298 -10.29267 -10.19089 -9.64447 -9.44959 -9.35215 -8.05449 -5.37990 0.49773 0.57393 1.32484 1.34753 1.39412 1.50015 1.98788 2.42813 2.69897 2.90215 3.25655 3.37016 3.48782 3.63891 3.87124 3.90709 3.94204 4.04671 4.09887 4.18271 4.26691 4.31188 4.32327 4.33011 4.34872 4.48621 4.54790 4.63534 4.73652 4.80533 4.81661 4.84320 4.91471 4.93524 5.03921 5.11701 5.16944 5.17498 5.26212 5.28800 5.41079 5.42531 5.62221 5.69936 5.71075 5.88342 6.08430 6.17346 6.20122 6.52114 7.01412 7.18449 7.76273 7.94339 9.15407 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.004209 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.252089 B = 6651.497930 C = 8801.046784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.377 6.377 4 C 0.084 3.916 5 H 0.122 0.878 6 C -0.119 4.119 7 C -0.140 4.140 8 C 0.487 3.513 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.145 3.855 12 H 0.072 0.928 13 C -0.073 4.073 14 C -0.106 4.106 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.132 4.132 18 C -0.107 4.107 19 C -0.121 4.121 20 C 0.210 3.790 21 H 0.080 0.920 22 N -0.741 5.741 23 C -0.216 4.216 24 H 0.068 0.932 25 C -0.048 4.048 26 N -0.976 5.976 27 Si 0.935 3.065 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.266 1.266 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.415 0.585 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.145 0.855 45 H 0.153 0.847 46 H 0.135 0.865 47 H 0.096 0.904 48 H 0.361 0.639 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.541 -20.215 6.664 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 O -0.295 6.295 4 C 0.023 3.977 5 H 0.140 0.860 6 C -0.157 4.157 7 C -0.198 4.198 8 C 0.274 3.726 9 O -0.451 6.451 10 N -0.354 5.354 11 C 0.038 3.962 12 H 0.090 0.910 13 C -0.111 4.111 14 C -0.107 4.107 15 C -0.130 4.130 16 C -0.137 4.137 17 C -0.150 4.150 18 C -0.126 4.126 19 C -0.124 4.124 20 C 0.101 3.899 21 H 0.097 0.903 22 N -0.382 5.382 23 C -0.347 4.347 24 H 0.086 0.914 25 C -0.240 4.240 26 N -0.626 5.626 27 Si 0.764 3.236 28 H -0.210 1.210 29 H -0.222 1.222 30 H -0.192 1.192 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.163 0.837 45 H 0.170 0.830 46 H 0.153 0.847 47 H 0.114 0.886 48 H 0.194 0.806 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.086 -19.932 6.162 23.173 hybrid contribution -0.033 1.305 -0.699 1.481 sum -10.119 -18.627 5.463 21.891 Atomic orbital electron populations 1.21730 0.92908 1.03379 1.02429 1.22761 0.96609 0.82748 1.00632 1.87997 1.19105 1.28290 1.94095 1.22180 0.83387 1.02234 0.89928 0.86015 1.21635 1.02036 0.94649 0.97387 1.21664 1.02044 1.03015 0.93027 1.22086 0.82200 0.75008 0.93270 1.90677 1.54452 1.50502 1.49511 1.45863 1.07256 1.74254 1.07980 1.21647 0.94669 0.96388 0.83466 0.90950 1.21259 0.95653 0.96054 0.98182 1.20624 0.97260 0.95163 0.97623 1.20878 0.97213 0.99812 0.95104 1.21329 0.95268 0.96973 1.00148 1.21301 1.00920 0.95058 0.97721 1.20766 0.96401 0.99079 0.96308 1.21392 0.95704 0.96251 0.99084 1.20100 0.92673 0.82031 0.95055 0.90279 1.42802 1.21355 1.04129 1.69937 1.18945 0.97659 0.89016 1.29055 0.91368 1.25195 0.99753 0.96593 1.02449 1.69824 1.34166 1.04322 1.54299 0.85718 0.80752 0.78016 0.79084 1.20965 1.22174 1.19197 0.93641 0.88902 0.91461 0.90613 0.94314 0.88982 0.92983 0.90682 0.91798 0.92553 0.74702 0.87643 0.90167 0.83714 0.82968 0.84749 0.88593 0.80646 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.91 6.44 71.98 0.46 1.37 16 3 O -0.38 -9.35 9.17 -129.99 -1.19 -10.54 16 4 C 0.08 1.81 2.51 29.85 0.07 1.88 16 5 H 0.12 1.69 7.81 -2.39 -0.02 1.67 16 6 C -0.12 -2.50 5.61 30.59 0.17 -2.33 16 7 C -0.14 -2.24 9.76 71.98 0.70 -1.54 16 8 C 0.49 13.97 7.12 87.66 0.62 14.60 16 9 O -0.57 -21.65 16.15 15.97 0.26 -21.40 16 10 N -0.70 -18.25 5.03 -438.24 -2.21 -20.45 16 11 C 0.14 4.54 3.13 45.90 0.14 4.68 16 12 H 0.07 2.74 7.22 -2.39 -0.02 2.72 16 13 C -0.07 -1.88 6.49 30.52 0.20 -1.68 16 14 C -0.11 -3.06 6.14 -19.60 -0.12 -3.18 16 15 C -0.11 -2.74 10.04 22.30 0.22 -2.52 16 16 C -0.12 -2.88 10.05 22.24 0.22 -2.65 16 17 C -0.13 -3.88 10.05 22.24 0.22 -3.66 16 18 C -0.11 -3.96 10.00 22.30 0.22 -3.73 16 19 C -0.12 -4.30 5.79 -19.60 -0.11 -4.41 16 20 C 0.21 7.69 3.23 44.91 0.15 7.84 16 21 H 0.08 2.82 7.75 -2.39 -0.02 2.80 16 22 N -0.74 -34.08 4.94 -323.34 -1.60 -35.68 16 23 C -0.22 -11.78 10.17 84.03 0.85 -10.92 16 24 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 25 C -0.05 -2.77 5.50 84.86 0.47 -2.30 16 26 N -0.98 -61.28 13.97 21.65 0.30 -60.98 16 27 Si 0.93 46.91 27.74 68.60 1.90 48.81 16 28 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 30 H -0.27 -12.75 6.52 99.48 0.65 -12.10 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.97 8.11 -2.39 -0.02 0.95 16 35 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.79 7.76 -2.39 -0.02 1.77 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.97 7.97 -2.39 -0.02 0.95 16 41 H 0.42 8.48 8.12 -92.70 -0.75 7.73 16 42 H 0.11 2.20 8.08 -2.39 -0.02 2.18 16 43 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 46 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 47 H 0.10 4.14 7.79 -2.91 -0.02 4.12 16 48 H 0.36 17.09 5.47 -92.71 -0.51 16.58 16 49 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.91 401.80 2.34 -72.57 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.37 Total: 37.89 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 5.25 Total: -10.23 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -3.50 Total: -117.11 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.93 Total: -31.94 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.90 Total: 48.81 kcal Total: -74.91 2.34 -72.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717359737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.615 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds