Wall clock time and date at job start Tue Mar 31 2020 16:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47609 * 2 1 4 4 C 1.42894 * 114.00420 * 177.27124 * 3 2 1 5 5 H 1.09005 * 109.46886 * 30.17775 * 4 3 2 6 6 C 1.53007 * 109.47360 * 150.17462 * 4 3 2 7 7 C 1.52996 * 109.47097 * 294.75378 * 6 4 3 8 8 C 1.50702 * 109.47414 * 270.17969 * 4 3 2 9 9 O 1.21284 * 119.99565 * 359.97438 * 8 4 3 10 10 N 1.34769 * 119.99921 * 179.97438 * 8 4 3 11 11 C 1.46502 * 119.99607 * 179.97438 * 10 8 4 12 12 H 1.09000 * 110.73301 * 31.59599 * 11 10 8 13 13 C 1.54342 * 110.82214 * 267.96912 * 11 10 8 14 14 C 1.51372 * 105.17177 * 215.42824 * 13 11 10 15 15 C 1.38497 * 130.38915 * 197.17237 * 14 13 11 16 16 C 1.38100 * 120.21756 * 180.02562 * 15 14 13 17 17 C 1.38258 * 119.92819 * 359.97302 * 16 15 14 18 18 C 1.38095 * 119.94182 * 0.02562 * 17 16 15 19 19 C 1.38216 * 109.75617 * 17.19706 * 14 13 11 20 20 C 1.51369 * 109.76068 * 359.97438 * 19 14 13 21 21 H 1.09003 * 110.38251 * 101.78760 * 20 19 14 22 22 N 1.46499 * 110.29968 * 223.89662 * 20 19 14 23 23 C 1.36937 * 120.00337 * 270.74386 * 22 20 19 24 24 H 1.08003 * 119.99491 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00148 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00153 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00115 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47175 * 89.99735 * 27 25 23 29 29 H 1.48505 * 109.47426 * 209.99899 * 27 25 23 30 30 H 1.48496 * 109.47374 * 329.99980 * 27 25 23 31 31 H 1.09003 * 109.46578 * 300.00049 * 1 2 3 32 32 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47124 * 59.99491 * 1 2 3 34 34 H 1.08996 * 109.47124 * 120.00508 * 2 1 3 35 35 H 1.09003 * 109.46578 * 239.99951 * 2 1 3 36 36 H 1.08997 * 109.46588 * 54.75360 * 6 4 3 37 37 H 1.09001 * 109.46886 * 174.75134 * 6 4 3 38 38 H 1.09001 * 109.47298 * 184.52211 * 7 6 4 39 39 H 1.09001 * 109.47190 * 304.52048 * 7 6 4 40 40 H 1.08997 * 109.47533 * 64.52251 * 7 6 4 41 41 H 0.97001 * 120.00677 * 359.97438 * 10 8 4 42 42 H 1.08995 * 110.30782 * 334.35237 * 13 11 10 43 43 H 1.09001 * 110.30220 * 96.50740 * 13 11 10 44 44 H 1.07999 * 119.89108 * 0.03722 * 15 14 13 45 45 H 1.07992 * 120.03757 * 180.02562 * 16 15 14 46 46 H 1.08000 * 120.02825 * 180.02562 * 17 16 15 47 47 H 1.08001 * 119.89628 * 180.02562 * 18 17 16 48 48 H 0.97003 * 119.99622 * 90.75089 * 22 20 19 49 49 H 0.96996 * 120.00186 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4295 1.4605 0.0621 5 1 3.8843 0.5956 -0.4209 6 6 3.8714 2.7369 -0.6566 7 6 3.5446 2.6223 -2.1468 8 6 3.8664 1.5184 1.5033 9 8 3.0403 1.4682 2.3898 10 7 5.1751 1.6261 1.8068 11 6 5.5997 1.6830 3.2078 12 1 4.9250 1.1050 3.8393 13 6 5.6949 3.1450 3.6933 14 6 6.8702 3.1701 4.6469 15 6 7.2283 4.1033 5.6055 16 6 8.3624 3.9137 6.3705 17 6 9.1430 2.7887 6.1798 18 6 8.7876 1.8570 5.2244 19 6 7.6509 2.0456 4.4558 20 6 7.0534 1.1877 3.3612 21 1 7.6003 1.3267 2.4286 22 7 7.0712 -0.2234 3.7546 23 6 8.1592 -1.0020 3.4624 24 1 9.0042 -0.5756 2.9423 25 6 8.1758 -2.3391 3.8347 26 7 9.2217 -3.0873 3.5543 27 14 6.7139 -3.0766 4.7336 28 1 5.7481 -3.6207 3.7454 29 1 7.1802 -4.1700 5.6237 30 1 6.0509 -2.0255 5.5465 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.8932 -0.5139 -0.8900 36 1 3.3450 3.5926 -0.2338 37 1 4.9455 2.8721 -0.5295 38 1 3.9310 3.4959 -2.6718 39 1 4.0059 1.7216 -2.5517 40 1 2.4640 2.5678 -2.2787 41 1 5.8358 1.6660 1.0978 42 1 5.8770 3.8122 2.8509 43 1 4.7803 3.4313 4.2127 44 1 6.6186 4.9820 5.7555 45 1 8.6387 4.6430 7.1175 46 1 10.0300 2.6386 6.7774 47 1 9.3977 0.9782 5.0763 48 1 6.3123 -0.6062 4.2220 49 1 9.2332 -4.0218 3.8141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717359738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:08 Heat of formation + Delta-G solvation = -49.206356 kcal Electronic energy + Delta-G solvation = -29141.221169 eV Core-core repulsion = 25261.204171 eV Total energy + Delta-G solvation = -3880.016998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.42511 -39.50689 -37.66822 -36.12691 -34.40244 -33.93228 -32.64059 -31.38242 -30.95945 -30.06406 -28.43641 -26.72983 -26.26907 -23.10797 -22.75607 -22.45844 -21.87408 -20.75885 -20.51075 -19.93477 -17.96700 -17.51352 -17.13015 -16.06083 -15.72883 -15.54859 -15.11483 -14.96764 -14.63617 -14.38895 -14.26052 -14.06383 -13.95230 -13.52887 -12.96040 -12.89187 -12.73328 -12.65139 -12.59796 -12.51603 -12.29805 -12.14922 -12.07934 -11.92090 -11.49003 -11.34328 -11.21462 -11.09276 -10.92968 -10.89166 -10.65917 -10.44747 -10.39786 -10.22269 -9.67918 -9.25217 -9.12897 -8.88595 -8.37725 -8.16988 -7.42157 -5.87859 -3.24638 1.73138 1.83123 2.65853 3.06837 3.32549 3.37886 3.41218 3.59391 4.16030 4.50788 4.52075 4.66451 4.73198 4.79549 4.94098 4.97241 5.02721 5.12765 5.25779 5.27800 5.29256 5.31007 5.35063 5.43968 5.47434 5.50520 5.56529 5.63397 5.64161 5.71397 5.83326 5.84717 5.85653 5.99097 6.00169 6.04446 6.05089 6.17467 6.25179 6.39804 6.55609 6.66007 6.83145 6.95222 6.97084 7.16513 7.43329 7.59862 7.85422 8.29895 8.31167 9.06653 9.79883 9.98256 11.29508 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008867 B = 0.004198 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.840367 B = 6669.011831 C = 8659.045464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.356 6.356 4 C 0.075 3.925 5 H 0.089 0.911 6 C -0.115 4.115 7 C -0.149 4.149 8 C 0.491 3.509 9 O -0.528 6.528 10 N -0.710 5.710 11 C 0.137 3.863 12 H 0.100 0.900 13 C -0.085 4.085 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.129 4.129 18 C -0.078 4.078 19 C -0.095 4.095 20 C 0.213 3.787 21 H 0.078 0.922 22 N -0.736 5.736 23 C -0.249 4.249 24 H 0.093 0.907 25 C 0.013 3.987 26 N -0.928 5.928 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.290 1.290 30 H -0.276 1.276 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.402 0.598 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.132 0.868 48 H 0.364 0.636 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.595 13.504 -7.248 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.273 6.273 4 C 0.013 3.987 5 H 0.106 0.894 6 C -0.153 4.153 7 C -0.206 4.206 8 C 0.276 3.724 9 O -0.404 6.404 10 N -0.363 5.363 11 C 0.031 3.969 12 H 0.118 0.882 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.097 4.097 19 C -0.098 4.098 20 C 0.102 3.898 21 H 0.095 0.905 22 N -0.378 5.378 23 C -0.378 4.378 24 H 0.110 0.890 25 C -0.184 4.184 26 N -0.575 5.575 27 Si 0.709 3.291 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.237 0.763 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.150 0.850 48 H 0.198 0.802 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.131 13.458 -6.729 18.140 hybrid contribution -0.350 -0.945 0.625 1.185 sum -10.481 12.514 -6.104 17.427 Atomic orbital electron populations 1.21697 0.93584 1.02176 1.03011 1.22575 0.95831 0.83526 1.00284 1.87952 1.18452 1.26828 1.94092 1.22080 0.83848 1.00689 0.92064 0.89375 1.21591 1.01433 0.96098 0.96201 1.21720 1.02478 1.01821 0.94586 1.21374 0.82606 0.76272 0.92128 1.90701 1.51923 1.48582 1.49163 1.45947 1.07464 1.74512 1.08351 1.21922 0.97082 0.95553 0.82327 0.88160 1.21327 0.96397 0.96971 0.97714 1.20438 0.97290 0.95728 0.97200 1.20460 0.97562 0.98851 0.96537 1.20903 0.95661 0.98155 1.00036 1.21073 0.99960 0.94784 0.98864 1.20860 0.96167 0.98649 0.93996 1.21539 0.94591 0.95124 0.98594 1.19904 0.91085 0.84245 0.94549 0.90482 1.42787 1.20261 1.05055 1.69666 1.19018 0.95636 0.91200 1.31946 0.88970 1.24620 0.97003 0.96281 1.00455 1.69689 1.29071 1.07150 1.51596 0.86646 0.83267 0.79140 0.80091 1.21056 1.21590 1.20200 0.91657 0.91164 0.92059 0.92830 0.93360 0.90426 0.90011 0.92275 0.92606 0.91893 0.76336 0.90103 0.90738 0.87064 0.86682 0.86463 0.85047 0.80225 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.06 16 2 C 0.05 0.63 6.40 37.16 0.24 0.87 16 3 O -0.36 -4.64 9.16 -55.14 -0.50 -5.15 16 4 C 0.07 0.87 2.52 -27.88 -0.07 0.80 16 5 H 0.09 0.90 7.82 -51.93 -0.41 0.50 16 6 C -0.12 -1.03 5.59 -26.73 -0.15 -1.18 16 7 C -0.15 -1.15 9.76 37.16 0.36 -0.78 16 8 C 0.49 7.25 7.18 -10.99 -0.08 7.17 16 9 O -0.53 -9.93 16.11 -14.36 -0.23 -10.16 16 10 N -0.71 -9.68 5.00 -52.44 -0.26 -9.94 16 11 C 0.14 2.20 3.13 -66.53 -0.21 1.99 16 12 H 0.10 1.87 7.22 -51.93 -0.37 1.49 16 13 C -0.09 -1.22 6.49 -26.85 -0.17 -1.39 16 14 C -0.11 -1.66 6.14 -104.20 -0.64 -2.30 16 15 C -0.12 -1.66 10.04 -39.54 -0.40 -2.05 16 16 C -0.13 -1.81 10.05 -39.62 -0.40 -2.21 16 17 C -0.13 -1.99 10.05 -39.63 -0.40 -2.39 16 18 C -0.08 -1.43 10.00 -39.53 -0.40 -1.83 16 19 C -0.09 -1.70 5.79 -104.20 -0.60 -2.30 16 20 C 0.21 3.88 3.23 -68.05 -0.22 3.66 16 21 H 0.08 1.37 7.75 -51.93 -0.40 0.97 16 22 N -0.74 -16.53 4.94 -53.55 -0.26 -16.79 16 23 C -0.25 -6.53 10.17 -15.06 -0.15 -6.69 16 24 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 25 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 26 N -0.93 -27.98 13.97 55.49 0.78 -27.20 16 27 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 28 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.60 7.42 -51.93 -0.39 0.21 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 41 H 0.40 4.46 7.78 -40.82 -0.32 4.14 16 42 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.13 2.65 7.79 -52.49 -0.41 2.25 16 48 H 0.36 8.45 5.47 -40.82 -0.22 8.23 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -32.61 401.05 -10.17 -42.78 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -8.01 Total: 12.68 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.00 Total: -9.42 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.25 Total: -53.93 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.74 Total: -15.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.61 -10.17 -42.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717359738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.424 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds