Wall clock time and date at job start Tue Mar 31 2020 16:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47609 * 2 1 4 4 C 1.42894 * 114.00420 * 177.27124 * 3 2 1 5 5 H 1.09005 * 109.46886 * 30.17775 * 4 3 2 6 6 C 1.53007 * 109.47360 * 150.17462 * 4 3 2 7 7 C 1.52996 * 109.47097 * 294.75378 * 6 4 3 8 8 C 1.50702 * 109.47414 * 270.17969 * 4 3 2 9 9 O 1.21284 * 119.99565 * 359.97438 * 8 4 3 10 10 N 1.34769 * 119.99921 * 179.97438 * 8 4 3 11 11 C 1.46502 * 119.99607 * 179.97438 * 10 8 4 12 12 H 1.09000 * 110.73301 * 31.59599 * 11 10 8 13 13 C 1.54342 * 110.82214 * 267.96912 * 11 10 8 14 14 C 1.51372 * 105.17177 * 215.42824 * 13 11 10 15 15 C 1.38497 * 130.38915 * 197.17237 * 14 13 11 16 16 C 1.38100 * 120.21756 * 180.02562 * 15 14 13 17 17 C 1.38258 * 119.92819 * 359.97302 * 16 15 14 18 18 C 1.38095 * 119.94182 * 0.02562 * 17 16 15 19 19 C 1.38216 * 109.75617 * 17.19706 * 14 13 11 20 20 C 1.51369 * 109.76068 * 359.97438 * 19 14 13 21 21 H 1.09003 * 110.38251 * 101.78760 * 20 19 14 22 22 N 1.46499 * 110.29968 * 223.89662 * 20 19 14 23 23 C 1.36937 * 120.00337 * 270.74386 * 22 20 19 24 24 H 1.08003 * 119.99491 * 0.02562 * 23 22 20 25 25 C 1.38806 * 120.00148 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00153 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00115 * 0.02562 * 25 23 22 28 28 H 1.48503 * 109.47175 * 89.99735 * 27 25 23 29 29 H 1.48505 * 109.47426 * 209.99899 * 27 25 23 30 30 H 1.48496 * 109.47374 * 329.99980 * 27 25 23 31 31 H 1.09003 * 109.46578 * 300.00049 * 1 2 3 32 32 H 1.08999 * 109.47362 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47124 * 59.99491 * 1 2 3 34 34 H 1.08996 * 109.47124 * 120.00508 * 2 1 3 35 35 H 1.09003 * 109.46578 * 239.99951 * 2 1 3 36 36 H 1.08997 * 109.46588 * 54.75360 * 6 4 3 37 37 H 1.09001 * 109.46886 * 174.75134 * 6 4 3 38 38 H 1.09001 * 109.47298 * 184.52211 * 7 6 4 39 39 H 1.09001 * 109.47190 * 304.52048 * 7 6 4 40 40 H 1.08997 * 109.47533 * 64.52251 * 7 6 4 41 41 H 0.97001 * 120.00677 * 359.97438 * 10 8 4 42 42 H 1.08995 * 110.30782 * 334.35237 * 13 11 10 43 43 H 1.09001 * 110.30220 * 96.50740 * 13 11 10 44 44 H 1.07999 * 119.89108 * 0.03722 * 15 14 13 45 45 H 1.07992 * 120.03757 * 180.02562 * 16 15 14 46 46 H 1.08000 * 120.02825 * 180.02562 * 17 16 15 47 47 H 1.08001 * 119.89628 * 180.02562 * 18 17 16 48 48 H 0.97003 * 119.99622 * 90.75089 * 22 20 19 49 49 H 0.96996 * 120.00186 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4295 1.4605 0.0621 5 1 3.8843 0.5956 -0.4209 6 6 3.8714 2.7369 -0.6566 7 6 3.5446 2.6223 -2.1468 8 6 3.8664 1.5184 1.5033 9 8 3.0403 1.4682 2.3898 10 7 5.1751 1.6261 1.8068 11 6 5.5997 1.6830 3.2078 12 1 4.9250 1.1050 3.8393 13 6 5.6949 3.1450 3.6933 14 6 6.8702 3.1701 4.6469 15 6 7.2283 4.1033 5.6055 16 6 8.3624 3.9137 6.3705 17 6 9.1430 2.7887 6.1798 18 6 8.7876 1.8570 5.2244 19 6 7.6509 2.0456 4.4558 20 6 7.0534 1.1877 3.3612 21 1 7.6003 1.3267 2.4286 22 7 7.0712 -0.2234 3.7546 23 6 8.1592 -1.0020 3.4624 24 1 9.0042 -0.5756 2.9423 25 6 8.1758 -2.3391 3.8347 26 7 9.2217 -3.0873 3.5543 27 14 6.7139 -3.0766 4.7336 28 1 5.7481 -3.6207 3.7454 29 1 7.1802 -4.1700 5.6237 30 1 6.0509 -2.0255 5.5465 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.8932 -0.5139 -0.8900 36 1 3.3450 3.5926 -0.2338 37 1 4.9455 2.8721 -0.5295 38 1 3.9310 3.4959 -2.6718 39 1 4.0059 1.7216 -2.5517 40 1 2.4640 2.5678 -2.2787 41 1 5.8358 1.6660 1.0978 42 1 5.8770 3.8122 2.8509 43 1 4.7803 3.4313 4.2127 44 1 6.6186 4.9820 5.7555 45 1 8.6387 4.6430 7.1175 46 1 10.0300 2.6386 6.7774 47 1 9.3977 0.9782 5.0763 48 1 6.3123 -0.6062 4.2220 49 1 9.2332 -4.0218 3.8141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717359738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:07 Heat of formation + Delta-G solvation = -68.943441 kcal Electronic energy + Delta-G solvation = -29142.077033 eV Core-core repulsion = 25261.204171 eV Total energy + Delta-G solvation = -3880.872862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65403 -40.68318 -38.72200 -37.49438 -35.87584 -35.07830 -33.86319 -33.18164 -31.77043 -31.51836 -29.57645 -27.88188 -27.65187 -24.65676 -23.96916 -23.47910 -22.85079 -21.97321 -21.85976 -21.17487 -19.79499 -18.68948 -18.18840 -17.36294 -17.12665 -16.65298 -16.38706 -16.15150 -16.00937 -15.76124 -15.35598 -15.15241 -14.97212 -14.85117 -14.78917 -14.26396 -13.98585 -13.92278 -13.73279 -13.55188 -13.34935 -13.28047 -13.00908 -12.99813 -12.85434 -12.67839 -12.39363 -12.28600 -12.20336 -12.04557 -11.99303 -11.82779 -11.70296 -11.64421 -11.44251 -11.10605 -10.30983 -10.19260 -9.64435 -9.45136 -9.35655 -8.05953 -5.38774 0.49930 0.57436 1.31665 1.33768 1.39134 1.51251 1.96514 2.42198 2.68069 2.90298 3.24910 3.36252 3.48573 3.63670 3.85670 3.90898 3.96317 4.04730 4.09837 4.13740 4.26771 4.29768 4.31668 4.33004 4.37137 4.44240 4.57808 4.63811 4.73854 4.78912 4.82320 4.86705 4.92023 4.93679 5.00532 5.11721 5.17800 5.18280 5.23556 5.28851 5.42151 5.44659 5.62383 5.69485 5.71090 5.88194 6.03299 6.16741 6.20173 6.50694 7.00676 7.17642 7.75410 7.93685 9.14884 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008867 B = 0.004198 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.840367 B = 6669.011831 C = 8659.045464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.370 6.370 4 C 0.076 3.924 5 H 0.104 0.896 6 C -0.111 4.111 7 C -0.145 4.145 8 C 0.489 3.511 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.145 3.855 12 H 0.073 0.927 13 C -0.074 4.074 14 C -0.105 4.105 15 C -0.113 4.113 16 C -0.119 4.119 17 C -0.132 4.132 18 C -0.107 4.107 19 C -0.121 4.121 20 C 0.210 3.790 21 H 0.079 0.921 22 N -0.741 5.741 23 C -0.217 4.217 24 H 0.068 0.932 25 C -0.049 4.049 26 N -0.976 5.976 27 Si 0.936 3.064 28 H -0.282 1.282 29 H -0.295 1.295 30 H -0.266 1.266 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.415 0.585 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.145 0.855 45 H 0.153 0.847 46 H 0.135 0.865 47 H 0.096 0.904 48 H 0.361 0.639 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 16.224 -7.570 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 O -0.288 6.288 4 C 0.015 3.985 5 H 0.122 0.878 6 C -0.149 4.149 7 C -0.202 4.202 8 C 0.276 3.724 9 O -0.452 6.452 10 N -0.353 5.353 11 C 0.039 3.961 12 H 0.091 0.909 13 C -0.112 4.112 14 C -0.106 4.106 15 C -0.130 4.130 16 C -0.137 4.137 17 C -0.150 4.150 18 C -0.125 4.125 19 C -0.124 4.124 20 C 0.101 3.899 21 H 0.097 0.903 22 N -0.382 5.382 23 C -0.348 4.348 24 H 0.086 0.914 25 C -0.241 4.241 26 N -0.626 5.626 27 Si 0.766 3.234 28 H -0.208 1.208 29 H -0.222 1.222 30 H -0.192 1.192 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.162 0.838 45 H 0.170 0.830 46 H 0.153 0.847 47 H 0.114 0.886 48 H 0.194 0.806 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.330 16.241 -7.075 21.029 hybrid contribution 0.079 -1.649 0.733 1.806 sum -11.251 14.592 -6.342 19.487 Atomic orbital electron populations 1.21706 0.92351 1.03273 1.02792 1.22714 0.96993 0.83054 1.00037 1.87947 1.19276 1.27623 1.93908 1.22276 0.83448 1.02804 0.90006 0.87799 1.21638 1.02405 0.94171 0.96641 1.21697 1.02039 1.02875 0.93626 1.22042 0.82203 0.74988 0.93202 1.90679 1.53062 1.50702 1.50723 1.45859 1.07720 1.73932 1.07825 1.21644 0.94611 0.96538 0.83319 0.90868 1.21262 0.96029 0.95664 0.98257 1.20621 0.96999 0.95239 0.97750 1.20880 0.97710 0.99243 0.95216 1.21328 0.94678 0.97723 0.99964 1.21298 1.00886 0.94708 0.98104 1.20763 0.96699 0.98830 0.96241 1.21388 0.95513 0.96499 0.99030 1.20101 0.92843 0.82038 0.94879 0.90289 1.42800 1.18893 1.06794 1.69750 1.18950 0.95455 0.91149 1.29216 0.91429 1.25217 0.99376 0.97033 1.02474 1.69829 1.31276 1.07306 1.54212 0.85696 0.80469 0.78268 0.79008 1.20833 1.22189 1.19173 0.93207 0.89460 0.90858 0.95321 0.91243 0.91157 0.88101 0.90813 0.91933 0.92782 0.74708 0.87644 0.90243 0.83762 0.82973 0.84736 0.88582 0.80620 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 10.28 71.98 0.74 -1.95 16 2 C 0.05 1.09 6.40 71.98 0.46 1.55 16 3 O -0.37 -9.33 9.16 -129.94 -1.19 -10.52 16 4 C 0.08 1.66 2.52 29.85 0.08 1.74 16 5 H 0.10 1.94 7.82 -2.38 -0.02 1.92 16 6 C -0.11 -1.73 5.59 30.60 0.17 -1.56 16 7 C -0.15 -1.86 9.76 71.98 0.70 -1.16 16 8 C 0.49 14.07 7.18 87.66 0.63 14.70 16 9 O -0.57 -21.65 16.11 15.99 0.26 -21.39 16 10 N -0.70 -18.30 5.00 -438.23 -2.19 -20.49 16 11 C 0.15 4.56 3.13 45.90 0.14 4.70 16 12 H 0.07 2.75 7.22 -2.39 -0.02 2.73 16 13 C -0.07 -1.93 6.49 30.52 0.20 -1.73 16 14 C -0.11 -3.07 6.14 -19.59 -0.12 -3.19 16 15 C -0.11 -2.79 10.04 22.30 0.22 -2.56 16 16 C -0.12 -2.89 10.05 22.24 0.22 -2.66 16 17 C -0.13 -3.89 10.05 22.24 0.22 -3.66 16 18 C -0.11 -3.95 10.00 22.30 0.22 -3.73 16 19 C -0.12 -4.31 5.79 -19.59 -0.11 -4.42 16 20 C 0.21 7.68 3.23 44.91 0.15 7.83 16 21 H 0.08 2.82 7.75 -2.39 -0.02 2.80 16 22 N -0.74 -33.90 4.94 -323.32 -1.60 -35.50 16 23 C -0.22 -11.78 10.17 84.03 0.85 -10.93 16 24 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 25 C -0.05 -2.81 5.50 84.86 0.47 -2.35 16 26 N -0.98 -60.99 13.97 21.65 0.30 -60.68 16 27 Si 0.94 46.38 27.74 68.60 1.90 48.28 16 28 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 29 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 30 H -0.27 -12.57 6.52 99.48 0.65 -11.92 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.17 7.42 -2.39 -0.02 1.15 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.05 0.80 7.95 -2.39 -0.02 0.78 16 41 H 0.42 8.53 7.78 -92.71 -0.72 7.80 16 42 H 0.11 2.26 8.08 -2.39 -0.02 2.24 16 43 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 46 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 47 H 0.10 4.14 7.79 -2.91 -0.02 4.12 16 48 H 0.36 16.93 5.47 -92.71 -0.51 16.42 16 49 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -73.78 401.05 2.39 -71.38 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -0.34 Total: 38.30 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 5.25 Total: -9.38 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -3.48 Total: -116.67 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.93 Total: -31.91 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.90 Total: 48.28 kcal Total: -73.78 2.39 -71.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717359738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.437 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds