Wall clock time and date at job start Tue Mar 31 2020 16:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 N 1.46507 * 109.47266 * 120.00156 * 2 1 3 5 5 C 1.46495 * 119.99602 * 299.99775 * 4 2 1 6 6 C 1.52998 * 109.47582 * 269.99665 * 5 4 2 7 7 N 1.46495 * 109.47582 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99785 * 89.99751 * 7 6 5 9 9 C 1.36936 * 120.00458 * 270.00659 * 7 6 5 10 10 H 1.08006 * 119.99838 * 23.04503 * 9 7 6 11 11 C 1.38811 * 120.00240 * 203.04397 * 9 7 6 12 12 N 1.31617 * 119.99669 * 12.93367 * 11 9 7 13 13 Si 1.86800 * 120.00239 * 192.93030 * 11 9 7 14 14 H 1.48499 * 109.46964 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47150 * 119.99788 * 13 11 9 16 16 H 1.48500 * 109.47031 * 240.00216 * 13 11 9 17 17 C 1.34776 * 120.00103 * 119.99831 * 4 2 1 18 18 O 1.21278 * 120.00015 * 180.02562 * 17 4 2 19 19 C 1.50704 * 120.00050 * 0.02562 * 17 4 2 20 20 H 1.09002 * 110.82688 * 300.70083 * 19 17 4 21 21 C 1.54711 * 110.94095 * 64.40571 * 19 17 4 22 22 O 1.43868 * 102.73508 * 143.46879 * 21 19 17 23 23 C 1.36135 * 109.25289 * 332.25345 * 22 21 19 24 24 C 1.39279 * 129.88837 * 198.40090 * 23 22 21 25 25 C 1.37932 * 120.24209 * 180.96581 * 24 23 22 26 26 C 1.38287 * 120.34571 * 0.02562 * 25 24 23 27 27 C 1.38346 * 119.77022 * 359.87840 * 26 25 24 28 28 C 1.37737 * 119.98199 * 359.92038 * 27 26 25 29 29 H 1.09002 * 109.47069 * 299.99760 * 1 2 3 30 30 H 1.08996 * 109.47044 * 60.00081 * 1 2 3 31 31 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47563 * 239.99652 * 2 1 3 33 33 H 1.08995 * 109.47326 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47327 * 300.00165 * 3 2 1 35 35 H 1.09002 * 109.46830 * 60.00094 * 3 2 1 36 36 H 1.09002 * 109.47334 * 30.00867 * 5 4 2 37 37 H 1.09003 * 109.46937 * 149.99813 * 5 4 2 38 38 H 1.08991 * 109.47340 * 300.00766 * 6 5 4 39 39 H 1.09005 * 109.46354 * 60.00090 * 6 5 4 40 40 H 1.09009 * 109.46648 * 95.12859 * 8 7 6 41 41 H 1.08997 * 109.47748 * 215.12509 * 8 7 6 42 42 H 1.08997 * 109.47254 * 335.13212 * 8 7 6 43 43 H 0.97005 * 119.99576 * 179.97438 * 12 11 9 44 44 H 1.08996 * 110.75059 * 261.80502 * 21 19 17 45 45 H 1.08999 * 110.74558 * 25.15941 * 21 19 17 46 46 H 1.08001 * 119.87605 * 0.99441 * 24 23 22 47 47 H 1.07994 * 119.82360 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.11567 * 179.87816 * 26 25 24 49 49 H 1.08007 * 120.00724 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7191 0.8169 2.9900 7 7 2.3655 1.3170 4.3208 8 6 2.8542 0.6260 5.5166 9 6 1.5781 2.4302 4.4471 10 1 0.9227 2.7225 3.6398 11 6 1.6221 3.1830 5.6125 12 7 2.5874 2.9879 6.4858 13 14 0.3116 4.4728 5.9414 14 1 -0.6544 4.4956 4.8138 15 1 -0.4045 4.1414 7.1994 16 1 0.9516 5.8064 6.0726 17 6 2.7932 -1.7865 1.0725 18 8 3.1971 -2.3585 2.0627 19 6 3.1577 -2.3010 -0.2963 20 1 2.2635 -2.5533 -0.8663 21 6 4.0283 -1.2745 -1.0591 22 8 4.9456 -2.1131 -1.7839 23 6 5.1208 -3.2793 -1.1039 24 6 6.1332 -4.2302 -1.2074 25 6 6.1036 -5.3646 -0.4234 26 6 5.0693 -5.5687 0.4715 27 6 4.0608 -4.6280 0.5818 28 6 4.0905 -3.4925 -0.1971 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.6904 0.2973 2.4844 37 1 1.6238 -1.0226 3.2291 38 1 3.6930 0.3295 3.0324 39 1 2.7597 1.6494 2.2875 40 1 3.7679 1.1069 5.8662 41 1 2.0966 0.6734 6.2988 42 1 3.0619 -0.4163 5.2746 43 1 2.6183 3.5143 7.3000 44 1 3.4192 -0.6851 -1.7443 45 1 4.5631 -0.6286 -0.3627 46 1 6.9446 -4.0784 -1.9038 47 1 6.8924 -6.0973 -0.5089 48 1 5.0488 -6.4592 1.0822 49 1 3.2509 -4.7837 1.2792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725733357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:49 Heat of formation + Delta-G solvation = -3.825507 kcal Electronic energy + Delta-G solvation = -29713.147480 eV Core-core repulsion = 25835.098343 eV Total energy + Delta-G solvation = -3878.049136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65260 -39.60271 -37.54401 -36.79340 -35.43667 -33.06380 -32.01885 -31.08789 -30.20352 -29.72909 -28.08005 -27.21621 -25.80966 -24.47807 -23.55210 -22.62210 -22.10881 -21.54851 -20.46783 -18.70524 -17.81955 -17.58333 -16.79502 -16.57910 -15.89294 -15.68985 -15.41362 -14.99737 -14.72664 -14.20089 -14.10329 -13.75829 -13.62340 -13.53823 -13.31997 -13.14361 -13.12488 -12.78420 -12.69061 -12.29084 -12.23269 -12.02875 -11.92960 -11.77418 -11.52197 -11.22955 -11.07957 -10.98222 -10.87533 -10.83170 -10.75331 -10.49773 -10.12878 -9.91556 -9.71596 -9.64874 -9.00204 -8.72663 -8.42128 -8.30165 -6.71336 -5.71186 -3.19200 1.14994 1.29247 2.63897 2.95062 3.10162 3.36331 3.42967 3.45020 3.64383 4.04573 4.30456 4.43767 4.50071 4.60493 4.71804 4.87108 4.94347 4.99994 5.03656 5.16846 5.24871 5.28426 5.34430 5.43026 5.52791 5.55530 5.57858 5.69580 5.75607 5.77232 5.83093 5.89406 6.04883 6.17842 6.18891 6.24403 6.30763 6.35567 6.40086 6.45362 6.56055 6.71185 6.88990 6.97721 7.01664 7.42399 7.55739 7.75782 7.81759 8.27775 8.40825 9.23981 9.87868 10.38124 11.33088 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003070 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.461960 B = 9117.384404 C = 9933.693488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 C -0.171 4.171 4 N -0.599 5.599 5 C 0.093 3.907 6 C 0.138 3.862 7 N -0.599 5.599 8 C 0.162 3.838 9 C -0.257 4.257 10 H 0.067 0.933 11 C 0.002 3.998 12 N -0.904 5.904 13 Si 0.903 3.097 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.519 3.481 18 O -0.522 6.522 19 C -0.101 4.101 20 H 0.118 0.882 21 C 0.063 3.937 22 O -0.302 6.302 23 C 0.105 3.895 24 C -0.143 4.143 25 C -0.084 4.084 26 C -0.152 4.152 27 C -0.039 4.039 28 C -0.151 4.151 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.000 1.000 43 H 0.252 0.748 44 H 0.116 0.884 45 H 0.085 0.915 46 H 0.127 0.873 47 H 0.130 0.870 48 H 0.127 0.873 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.128 -12.876 -18.922 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 C -0.229 4.229 4 N -0.332 5.332 5 C -0.031 4.031 6 C 0.010 3.990 7 N -0.322 5.322 8 C 0.017 3.983 9 C -0.386 4.386 10 H 0.085 0.915 11 C -0.196 4.196 12 N -0.549 5.549 13 Si 0.733 3.267 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.305 3.695 18 O -0.397 6.397 19 C -0.122 4.122 20 H 0.136 0.864 21 C -0.012 4.012 22 O -0.216 6.216 23 C 0.060 3.940 24 C -0.162 4.162 25 C -0.102 4.102 26 C -0.170 4.170 27 C -0.057 4.057 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.134 0.866 45 H 0.103 0.897 46 H 0.145 0.855 47 H 0.148 0.852 48 H 0.145 0.855 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.467 -12.990 -18.389 22.562 hybrid contribution -0.935 0.912 0.439 1.378 sum 0.532 -12.078 -17.950 21.641 Atomic orbital electron populations 1.22175 0.94644 1.02346 1.03109 1.21314 0.94974 0.94131 0.87656 1.22368 1.01731 0.95321 1.03508 1.48195 1.49940 1.27190 1.07897 1.22513 1.00706 0.99014 0.80889 1.21170 0.94507 0.94889 0.88433 1.43845 1.59286 1.29689 0.99392 1.20800 0.98895 0.90266 0.88307 1.19183 1.15474 1.02057 1.01899 0.91494 1.25035 0.97725 0.98195 0.98656 1.70095 1.31099 1.42330 1.11404 0.86215 0.81270 0.81314 0.77891 1.20355 1.21633 1.21749 1.19989 0.78875 0.80599 0.90034 1.90729 1.52567 1.57464 1.38978 1.21552 0.99883 0.94276 0.96525 0.86420 1.24016 0.89792 0.92162 0.95253 1.86849 1.63777 1.26167 1.44769 1.19553 0.94327 0.87781 0.92309 1.20198 0.97885 0.94475 1.03658 1.20873 0.98176 0.96192 0.94939 1.21063 0.95386 1.00041 1.00541 1.20376 0.98473 0.91241 0.95651 1.20206 0.96357 0.97215 1.01488 0.91261 0.91428 0.92454 0.89712 0.92126 0.91594 0.90265 0.90568 0.90671 0.94672 0.92884 0.95143 0.94162 0.98096 0.93799 0.86616 0.89655 0.85499 0.85227 0.85461 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.17 37.16 0.34 -1.24 16 2 C 0.12 1.27 2.70 -67.93 -0.18 1.09 16 3 C -0.17 -1.84 8.14 37.16 0.30 -1.53 16 4 N -0.60 -8.41 2.40 -166.11 -0.40 -8.80 16 5 C 0.09 1.65 5.15 -4.05 -0.02 1.63 16 6 C 0.14 2.90 5.69 -4.05 -0.02 2.87 16 7 N -0.60 -15.27 2.92 -181.12 -0.53 -15.80 16 8 C 0.16 4.20 8.98 59.85 0.54 4.73 16 9 C -0.26 -6.95 9.65 -15.06 -0.15 -7.10 16 10 H 0.07 1.74 7.86 -52.48 -0.41 1.32 16 11 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 12 N -0.90 -26.66 10.71 55.49 0.59 -26.07 16 13 Si 0.90 21.65 29.57 -169.99 -5.03 16.63 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 C 0.52 7.78 6.98 -10.98 -0.08 7.71 16 18 O -0.52 -9.94 14.68 5.56 0.08 -9.86 16 19 C -0.10 -1.19 2.51 -91.56 -0.23 -1.42 16 20 H 0.12 1.11 7.78 -51.93 -0.40 0.71 16 21 C 0.06 0.66 6.43 38.06 0.24 0.90 16 22 O -0.30 -3.71 11.11 -20.17 -0.22 -3.94 16 23 C 0.11 1.35 7.04 -38.95 -0.27 1.07 16 24 C -0.14 -1.58 10.06 -39.31 -0.40 -1.98 16 25 C -0.08 -0.82 10.02 -39.68 -0.40 -1.22 16 26 C -0.15 -1.63 10.07 -39.52 -0.40 -2.03 16 27 C -0.04 -0.50 9.06 -39.72 -0.36 -0.86 16 28 C -0.15 -2.00 5.42 -104.10 -0.56 -2.56 16 29 H 0.07 0.79 6.66 -51.93 -0.35 0.44 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.68 4.06 -51.93 -0.21 0.47 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.07 6.17 -51.93 -0.32 0.75 16 36 H 0.08 1.34 6.43 -51.93 -0.33 1.00 16 37 H 0.07 1.51 7.42 -51.93 -0.39 1.12 16 38 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.05 1.06 5.34 -51.93 -0.28 0.79 16 40 H 0.03 0.85 7.34 -51.92 -0.38 0.47 16 41 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 42 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.12 0.84 6.69 -51.93 -0.35 0.49 16 45 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 46 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.13 1.65 7.74 -52.48 -0.41 1.24 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -33.00 384.77 -8.98 -41.98 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -7.55 Total: 0.02 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.73 Total: 0.04 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.33 Total: -50.67 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.14 Total: -13.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.00 -8.98 -41.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725733357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.156 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds