Wall clock time and date at job start Tue Mar 31 2020 16:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47365 * 2 1 4 4 N 1.46507 * 109.47266 * 120.00156 * 2 1 3 5 5 C 1.46495 * 119.99602 * 299.99775 * 4 2 1 6 6 C 1.52998 * 109.47582 * 269.99665 * 5 4 2 7 7 N 1.46495 * 109.47582 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99785 * 89.99751 * 7 6 5 9 9 C 1.36936 * 120.00458 * 270.00659 * 7 6 5 10 10 H 1.08006 * 119.99838 * 23.04503 * 9 7 6 11 11 C 1.38811 * 120.00240 * 203.04397 * 9 7 6 12 12 N 1.31617 * 119.99669 * 12.93367 * 11 9 7 13 13 Si 1.86800 * 120.00239 * 192.93030 * 11 9 7 14 14 H 1.48499 * 109.46964 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47150 * 119.99788 * 13 11 9 16 16 H 1.48500 * 109.47031 * 240.00216 * 13 11 9 17 17 C 1.34776 * 120.00103 * 119.99831 * 4 2 1 18 18 O 1.21278 * 120.00015 * 180.02562 * 17 4 2 19 19 C 1.50704 * 120.00050 * 0.02562 * 17 4 2 20 20 H 1.09002 * 110.82688 * 300.70083 * 19 17 4 21 21 C 1.54711 * 110.94095 * 64.40571 * 19 17 4 22 22 O 1.43868 * 102.73508 * 143.46879 * 21 19 17 23 23 C 1.36135 * 109.25289 * 332.25345 * 22 21 19 24 24 C 1.39279 * 129.88837 * 198.40090 * 23 22 21 25 25 C 1.37932 * 120.24209 * 180.96581 * 24 23 22 26 26 C 1.38287 * 120.34571 * 0.02562 * 25 24 23 27 27 C 1.38346 * 119.77022 * 359.87840 * 26 25 24 28 28 C 1.37737 * 119.98199 * 359.92038 * 27 26 25 29 29 H 1.09002 * 109.47069 * 299.99760 * 1 2 3 30 30 H 1.08996 * 109.47044 * 60.00081 * 1 2 3 31 31 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47563 * 239.99652 * 2 1 3 33 33 H 1.08995 * 109.47326 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47327 * 300.00165 * 3 2 1 35 35 H 1.09002 * 109.46830 * 60.00094 * 3 2 1 36 36 H 1.09002 * 109.47334 * 30.00867 * 5 4 2 37 37 H 1.09003 * 109.46937 * 149.99813 * 5 4 2 38 38 H 1.08991 * 109.47340 * 300.00766 * 6 5 4 39 39 H 1.09005 * 109.46354 * 60.00090 * 6 5 4 40 40 H 1.09009 * 109.46648 * 95.12859 * 8 7 6 41 41 H 1.08997 * 109.47748 * 215.12509 * 8 7 6 42 42 H 1.08997 * 109.47254 * 335.13212 * 8 7 6 43 43 H 0.97005 * 119.99576 * 179.97438 * 12 11 9 44 44 H 1.08996 * 110.75059 * 261.80502 * 21 19 17 45 45 H 1.08999 * 110.74558 * 25.15941 * 21 19 17 46 46 H 1.08001 * 119.87605 * 0.99441 * 24 23 22 47 47 H 1.07994 * 119.82360 * 180.02562 * 25 24 23 48 48 H 1.08001 * 120.11567 * 179.87816 * 26 25 24 49 49 H 1.08007 * 120.00724 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7191 0.8169 2.9900 7 7 2.3655 1.3170 4.3208 8 6 2.8542 0.6260 5.5166 9 6 1.5781 2.4302 4.4471 10 1 0.9227 2.7225 3.6398 11 6 1.6221 3.1830 5.6125 12 7 2.5874 2.9879 6.4858 13 14 0.3116 4.4728 5.9414 14 1 -0.6544 4.4956 4.8138 15 1 -0.4045 4.1414 7.1994 16 1 0.9516 5.8064 6.0726 17 6 2.7932 -1.7865 1.0725 18 8 3.1971 -2.3585 2.0627 19 6 3.1577 -2.3010 -0.2963 20 1 2.2635 -2.5533 -0.8663 21 6 4.0283 -1.2745 -1.0591 22 8 4.9456 -2.1131 -1.7839 23 6 5.1208 -3.2793 -1.1039 24 6 6.1332 -4.2302 -1.2074 25 6 6.1036 -5.3646 -0.4234 26 6 5.0693 -5.5687 0.4715 27 6 4.0608 -4.6280 0.5818 28 6 4.0905 -3.4925 -0.1971 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.6904 0.2973 2.4844 37 1 1.6238 -1.0226 3.2291 38 1 3.6930 0.3295 3.0324 39 1 2.7597 1.6494 2.2875 40 1 3.7679 1.1069 5.8662 41 1 2.0966 0.6734 6.2988 42 1 3.0619 -0.4163 5.2746 43 1 2.6183 3.5143 7.3000 44 1 3.4192 -0.6851 -1.7443 45 1 4.5631 -0.6286 -0.3627 46 1 6.9446 -4.0784 -1.9038 47 1 6.8924 -6.0973 -0.5089 48 1 5.0488 -6.4592 1.0822 49 1 3.2509 -4.7837 1.2792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725733357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:48 Heat of formation + Delta-G solvation = -22.860272 kcal Electronic energy + Delta-G solvation = -29713.972889 eV Core-core repulsion = 25835.098343 eV Total energy + Delta-G solvation = -3878.874546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.58943 -40.73575 -38.41390 -38.10972 -37.19336 -34.19788 -33.49685 -32.53864 -31.12530 -30.73953 -29.54104 -28.06413 -27.93668 -25.79162 -24.80070 -23.63534 -23.06344 -22.60953 -22.20646 -19.80493 -18.95759 -18.59453 -18.44205 -17.65625 -17.17908 -16.73731 -16.62169 -16.35301 -16.06306 -15.53221 -15.26550 -15.06811 -14.81127 -14.76927 -14.43847 -14.39115 -14.20593 -14.07489 -13.82972 -13.64623 -13.33685 -13.17970 -13.03306 -12.86069 -12.81474 -12.71465 -12.60971 -12.49679 -12.16489 -12.11390 -12.01340 -11.90470 -11.80621 -11.67002 -11.41595 -10.91464 -10.70249 -9.89259 -9.82978 -9.17886 -8.78099 -7.83346 -5.34978 0.28707 0.41105 1.45751 1.47830 1.48585 1.58312 1.85675 2.20621 2.51088 2.76974 3.12028 3.30669 3.39588 3.52381 3.69362 3.82012 3.87848 4.01069 4.13365 4.16291 4.20440 4.24316 4.42662 4.45067 4.47893 4.50813 4.54353 4.62028 4.67756 4.70645 4.80123 4.82078 4.89454 4.99556 5.02117 5.05754 5.10536 5.23454 5.33854 5.39608 5.44957 5.47241 5.53552 5.56769 5.59642 5.61626 5.64276 6.16141 6.29808 6.40965 7.08914 7.12104 7.81240 8.29455 9.20716 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.003070 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.461960 B = 9117.384404 C = 9933.693488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.119 3.881 3 C -0.170 4.170 4 N -0.595 5.595 5 C 0.115 3.885 6 C 0.145 3.855 7 N -0.616 5.616 8 C 0.180 3.820 9 C -0.260 4.260 10 H 0.080 0.920 11 C -0.057 4.057 12 N -0.942 5.942 13 Si 0.972 3.028 14 H -0.259 1.259 15 H -0.294 1.294 16 H -0.293 1.293 17 C 0.516 3.484 18 O -0.571 6.571 19 C -0.093 4.093 20 H 0.147 0.853 21 C 0.064 3.936 22 O -0.307 6.307 23 C 0.085 3.915 24 C -0.149 4.149 25 C -0.079 4.079 26 C -0.156 4.156 27 C -0.062 4.062 28 C -0.175 4.175 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.017 0.983 39 H 0.064 0.936 40 H 0.004 0.996 41 H 0.019 0.981 42 H 0.014 0.986 43 H 0.248 0.752 44 H 0.156 0.844 45 H 0.071 0.929 46 H 0.147 0.853 47 H 0.164 0.836 48 H 0.148 0.852 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -12.969 -22.182 25.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 C -0.228 4.228 4 N -0.327 5.327 5 C -0.010 4.010 6 C 0.018 3.982 7 N -0.339 5.339 8 C 0.035 3.965 9 C -0.390 4.390 10 H 0.098 0.902 11 C -0.251 4.251 12 N -0.589 5.589 13 Si 0.800 3.200 14 H -0.183 1.183 15 H -0.221 1.221 16 H -0.220 1.220 17 C 0.304 3.696 18 O -0.449 6.449 19 C -0.114 4.114 20 H 0.164 0.836 21 C -0.010 4.010 22 O -0.221 6.221 23 C 0.040 3.960 24 C -0.168 4.168 25 C -0.097 4.097 26 C -0.174 4.174 27 C -0.081 4.081 28 C -0.176 4.176 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.083 0.917 40 H 0.022 0.978 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.057 0.943 44 H 0.173 0.827 45 H 0.089 0.911 46 H 0.165 0.835 47 H 0.181 0.819 48 H 0.165 0.835 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.689 -13.085 -21.726 25.371 hybrid contribution -0.627 0.865 1.401 1.762 sum 0.062 -12.220 -20.325 23.716 Atomic orbital electron populations 1.22167 0.93646 1.02696 1.03454 1.21666 0.95758 0.93973 0.86900 1.22353 1.01517 0.95329 1.03580 1.48214 1.49673 1.27170 1.07636 1.21870 0.99565 0.96989 0.82624 1.21247 0.94550 0.95694 0.86729 1.44077 1.59423 1.29763 1.00687 1.20475 0.96935 0.90762 0.88327 1.19586 1.15354 1.01930 1.02127 0.90226 1.25895 0.99844 1.00687 0.98697 1.70273 1.33083 1.43730 1.11813 0.85127 0.78786 0.78217 0.77852 1.18303 1.22121 1.21981 1.20624 0.77876 0.80108 0.90963 1.90707 1.54323 1.58966 1.40938 1.21573 1.01100 0.94208 0.94497 0.83579 1.24183 0.89558 0.91600 0.95685 1.86834 1.64249 1.26160 1.44896 1.19836 0.94889 0.88450 0.92786 1.20602 0.97913 0.94313 1.03935 1.21282 0.98392 0.96355 0.93664 1.21388 0.94960 1.00231 1.00795 1.20492 0.99198 0.92297 0.96083 1.20442 0.97283 0.97764 1.02126 0.93445 0.88508 0.92144 0.86402 0.92506 0.88314 0.93321 0.90034 0.93422 0.96458 0.91746 0.97820 0.96213 0.96698 0.94325 0.82687 0.91122 0.83550 0.81858 0.83459 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.17 71.98 0.66 -1.97 16 2 C 0.12 2.14 2.70 44.99 0.12 2.26 16 3 C -0.17 -3.20 8.14 71.98 0.59 -2.62 16 4 N -0.59 -16.28 2.40 -797.83 -1.91 -18.19 16 5 C 0.11 4.13 5.15 86.38 0.44 4.58 16 6 C 0.14 6.18 5.69 86.38 0.49 6.68 16 7 N -0.62 -32.19 2.92 -726.94 -2.12 -34.31 16 8 C 0.18 9.76 8.98 127.77 1.15 10.91 16 9 C -0.26 -14.19 9.65 84.03 0.81 -13.38 16 10 H 0.08 4.06 7.86 -2.91 -0.02 4.04 16 11 C -0.06 -3.18 5.10 84.86 0.43 -2.75 16 12 N -0.94 -57.14 10.71 21.65 0.23 -56.91 16 13 Si 0.97 44.76 29.57 68.60 2.03 46.78 16 14 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 15 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 17 C 0.52 15.42 6.98 87.66 0.61 16.03 16 18 O -0.57 -22.59 14.68 -3.02 -0.04 -22.63 16 19 C -0.09 -2.05 2.51 -11.40 -0.03 -2.07 16 20 H 0.15 2.33 7.78 -2.39 -0.02 2.31 16 21 C 0.06 1.20 6.43 72.57 0.47 1.67 16 22 O -0.31 -6.96 11.11 -95.09 -1.06 -8.02 16 23 C 0.09 2.07 7.04 22.68 0.16 2.23 16 24 C -0.15 -3.01 10.06 22.45 0.23 -2.78 16 25 C -0.08 -1.39 10.02 22.21 0.22 -1.17 16 26 C -0.16 -3.19 10.07 22.31 0.22 -2.96 16 27 C -0.06 -1.61 9.06 22.18 0.20 -1.41 16 28 C -0.17 -4.52 5.42 -19.53 -0.11 -4.63 16 29 H 0.05 0.99 6.66 -2.39 -0.02 0.98 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 1.37 4.06 -2.39 -0.01 1.36 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.24 6.17 -2.39 -0.01 1.22 16 36 H 0.08 2.86 6.43 -2.39 -0.02 2.85 16 37 H 0.05 1.99 7.42 -2.39 -0.02 1.97 16 38 H 0.02 0.78 8.07 -2.39 -0.02 0.76 16 39 H 0.06 2.60 5.34 -2.38 -0.01 2.59 16 40 H 0.00 0.21 7.34 -2.38 -0.02 0.19 16 41 H 0.02 1.10 7.34 -2.39 -0.02 1.09 16 42 H 0.01 0.73 8.03 -2.39 -0.02 0.71 16 43 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 44 H 0.16 1.56 6.69 -2.39 -0.02 1.55 16 45 H 0.07 1.53 7.91 -2.39 -0.02 1.51 16 46 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 49 H 0.11 3.13 7.74 -2.91 -0.02 3.11 16 Total: -1.00 -75.01 384.77 4.74 -70.27 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.94 Total: 14.40 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 6.67 Total: 8.61 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.81 Total: -109.42 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -1.10 Total: -30.65 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.01 4.74 -70.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725733357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.407 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds