Wall clock time and date at job start Tue Mar 31 2020 16:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46973 * 2 1 4 4 N 1.46501 * 109.47316 * 120.00306 * 2 1 3 5 5 C 1.46501 * 119.99881 * 299.99596 * 4 2 1 6 6 C 1.53006 * 109.46377 * 90.00125 * 5 4 2 7 7 N 1.46501 * 109.46377 * 179.97438 * 6 5 4 8 8 C 1.46501 * 119.99881 * 269.99875 * 7 6 5 9 9 C 1.36942 * 120.00000 * 90.00272 * 7 6 5 10 10 H 1.07991 * 119.99720 * 339.31896 * 9 7 6 11 11 C 1.38808 * 119.99753 * 159.31183 * 9 7 6 12 12 N 1.31621 * 120.00368 * 347.99722 * 11 9 7 13 13 Si 1.86802 * 119.99943 * 168.26659 * 11 9 7 14 14 H 1.48499 * 109.47127 * 269.73271 * 13 11 9 15 15 H 1.48505 * 109.46705 * 29.72348 * 13 11 9 16 16 H 1.48495 * 109.47398 * 149.72840 * 13 11 9 17 17 C 1.34780 * 119.99824 * 120.00204 * 4 2 1 18 18 O 1.21284 * 119.99637 * 180.02562 * 17 4 2 19 19 C 1.50690 * 120.00272 * 359.97438 * 17 4 2 20 20 H 1.09010 * 110.83349 * 62.27228 * 19 17 4 21 21 C 1.54709 * 110.94882 * 298.55219 * 19 17 4 22 22 O 1.43767 * 102.79663 * 216.48279 * 21 19 17 23 23 C 1.36131 * 109.28826 * 27.54731 * 22 21 19 24 24 C 1.39286 * 129.88418 * 161.46263 * 23 22 21 25 25 C 1.37933 * 120.24602 * 179.57521 * 24 23 22 26 26 C 1.38283 * 120.35205 * 0.02562 * 25 24 23 27 27 C 1.38347 * 119.76537 * 0.17242 * 26 25 24 28 28 C 1.37746 * 119.97785 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47148 * 299.99748 * 1 2 3 30 30 H 1.09001 * 109.47547 * 59.99968 * 1 2 3 31 31 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47116 * 240.00037 * 2 1 3 33 33 H 1.09007 * 109.46687 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47388 * 299.99972 * 3 2 1 35 35 H 1.08997 * 109.46978 * 60.00148 * 3 2 1 36 36 H 1.08996 * 109.47198 * 330.00486 * 5 4 2 37 37 H 1.08993 * 109.46999 * 210.00218 * 5 4 2 38 38 H 1.08996 * 109.47161 * 60.00339 * 6 5 4 39 39 H 1.09001 * 109.47382 * 299.99679 * 6 5 4 40 40 H 1.09007 * 109.47040 * 264.89706 * 8 7 6 41 41 H 1.08997 * 109.47171 * 24.90249 * 8 7 6 42 42 H 1.09001 * 109.47147 * 144.90511 * 8 7 6 43 43 H 0.97007 * 120.00064 * 180.02562 * 12 11 9 44 44 H 1.09003 * 110.74659 * 334.80665 * 21 19 17 45 45 H 1.09001 * 110.75258 * 98.15470 * 21 19 17 46 46 H 1.07998 * 119.87641 * 359.56254 * 24 23 22 47 47 H 1.08000 * 119.81737 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.11640 * 180.14829 * 26 25 24 49 49 H 1.08002 * 120.01268 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 0.3635 -0.8488 2.9899 7 7 0.0099 -0.3488 4.3208 8 6 0.4985 -1.0400 5.5165 9 6 -0.7772 0.7647 4.4470 10 1 -0.8644 1.4602 3.6255 11 6 -1.4630 0.9991 5.6309 12 7 -1.5518 0.0505 6.5390 13 14 -2.2665 2.6584 5.9319 14 1 -1.3008 3.5603 6.6096 15 1 -2.6730 3.2543 4.6338 16 1 -3.4641 2.4798 6.7915 17 6 2.7933 -1.7865 1.0723 18 8 3.1972 -2.3585 2.0626 19 6 3.1568 -2.3015 -0.2963 20 1 3.7380 -1.5618 -0.8472 21 6 1.8919 -2.7114 -1.0871 22 8 2.3344 -3.8669 -1.8191 23 6 3.3395 -4.4764 -1.1324 24 6 3.8396 -5.7717 -1.2434 25 6 4.8838 -6.1843 -0.4422 26 6 5.4434 -5.3170 0.4782 27 6 4.9498 -4.0301 0.5975 28 6 3.9050 -3.6170 -0.1994 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5295 0.8906 2.4844 37 1 2.4630 -0.4294 3.2290 38 1 0.4984 -1.9296 3.0323 39 1 -0.4350 -0.6096 2.2875 40 1 -0.2594 -1.7413 5.8659 41 1 1.4121 -1.5829 5.2746 42 1 0.7060 -0.3099 6.2989 43 1 -2.0314 0.2143 7.3662 44 1 1.0797 -2.9720 -0.4084 45 1 1.5875 -1.9164 -1.7679 46 1 3.4079 -6.4555 -1.9592 47 1 5.2659 -7.1903 -0.5338 48 1 6.2625 -5.6434 1.1019 49 1 5.3835 -3.3496 1.3153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725733360.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:51 Heat of formation + Delta-G solvation = -20.621259 kcal Electronic energy + Delta-G solvation = -29734.349642 eV Core-core repulsion = 25855.572187 eV Total energy + Delta-G solvation = -3878.777455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60400 -40.73655 -38.42728 -38.10960 -37.20461 -34.21010 -33.49083 -32.53625 -31.12516 -30.74733 -29.52559 -28.06301 -27.94894 -25.77539 -24.82570 -23.63428 -23.05814 -22.60563 -22.20835 -19.82350 -18.95303 -18.58888 -18.45936 -17.65031 -17.18835 -16.74142 -16.62010 -16.34862 -16.07035 -15.52057 -15.26171 -15.07941 -14.81384 -14.75967 -14.43022 -14.39464 -14.20314 -14.07192 -13.82630 -13.64300 -13.33508 -13.17589 -13.04161 -12.84232 -12.80922 -12.72129 -12.61204 -12.47074 -12.17504 -12.12093 -12.02205 -11.91281 -11.80066 -11.64880 -11.41374 -10.91360 -10.68928 -9.89844 -9.82933 -9.17799 -8.80700 -7.82769 -5.32637 0.28558 0.41133 1.46163 1.48247 1.49253 1.57344 1.85391 2.20558 2.51374 2.77081 3.11279 3.31242 3.39213 3.52607 3.68966 3.81706 3.87450 4.01112 4.13160 4.16205 4.20138 4.23782 4.42663 4.45121 4.47885 4.51026 4.54225 4.61687 4.68046 4.70567 4.80320 4.82007 4.89258 4.99561 5.02061 5.05767 5.11050 5.25891 5.33876 5.39678 5.45198 5.47298 5.53322 5.56622 5.59808 5.61920 5.65147 6.16288 6.28896 6.40817 7.08930 7.12211 7.81784 8.28909 9.21452 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.003088 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.691545 B = 9066.439645 C = 9910.436270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 C -0.162 4.162 4 N -0.595 5.595 5 C 0.115 3.885 6 C 0.145 3.855 7 N -0.617 5.617 8 C 0.183 3.817 9 C -0.260 4.260 10 H 0.082 0.918 11 C -0.058 4.058 12 N -0.944 5.944 13 Si 0.974 3.026 14 H -0.287 1.287 15 H -0.261 1.261 16 H -0.298 1.298 17 C 0.516 3.484 18 O -0.571 6.571 19 C -0.093 4.093 20 H 0.147 0.853 21 C 0.063 3.937 22 O -0.307 6.307 23 C 0.086 3.914 24 C -0.149 4.149 25 C -0.079 4.079 26 C -0.156 4.156 27 C -0.062 4.062 28 C -0.176 4.176 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.119 0.881 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.017 0.983 39 H 0.065 0.935 40 H 0.002 0.998 41 H 0.012 0.988 42 H 0.022 0.978 43 H 0.247 0.753 44 H 0.072 0.928 45 H 0.156 0.844 46 H 0.147 0.853 47 H 0.164 0.836 48 H 0.147 0.853 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.684 -4.871 -22.374 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 C -0.220 4.220 4 N -0.327 5.327 5 C -0.011 4.011 6 C 0.018 3.982 7 N -0.341 5.341 8 C 0.037 3.963 9 C -0.389 4.389 10 H 0.099 0.901 11 C -0.253 4.253 12 N -0.591 5.591 13 Si 0.802 3.198 14 H -0.214 1.214 15 H -0.186 1.186 16 H -0.225 1.225 17 C 0.304 3.696 18 O -0.449 6.449 19 C -0.114 4.114 20 H 0.164 0.836 21 C -0.011 4.011 22 O -0.221 6.221 23 C 0.041 3.959 24 C -0.168 4.168 25 C -0.097 4.097 26 C -0.174 4.174 27 C -0.080 4.080 28 C -0.177 4.177 29 H 0.067 0.933 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.020 0.980 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.174 0.826 46 H 0.165 0.835 47 H 0.181 0.819 48 H 0.165 0.835 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.677 -5.203 -21.918 25.373 hybrid contribution -0.560 0.898 1.396 1.752 sum 11.117 -4.306 -20.522 23.733 Atomic orbital electron populations 1.22358 0.94161 1.02679 1.03607 1.21705 0.95284 0.94502 0.86950 1.22169 1.01534 0.94794 1.03470 1.48213 1.49382 1.27472 1.07631 1.21877 0.97489 0.99085 0.82609 1.21246 0.95422 0.94865 0.86665 1.44100 1.57676 1.31569 1.00738 1.20475 0.92964 0.94486 0.88336 1.19593 1.20191 0.98707 1.00434 0.90063 1.25861 0.99896 1.01292 0.98211 1.70286 1.46462 1.32911 1.09481 0.85165 0.77182 0.79401 0.78091 1.21426 1.18555 1.22473 1.20629 0.78001 0.79979 0.90969 1.90706 1.55133 1.58158 1.40934 1.21573 0.98241 0.97202 0.94364 0.83560 1.24228 0.94108 0.87429 0.95358 1.86814 1.49939 1.41248 1.44116 1.19834 0.89751 0.93788 0.92526 1.20603 1.00180 0.92158 1.03833 1.21283 0.94054 1.00811 0.93521 1.21389 1.02196 0.93159 1.00682 1.20505 0.94403 0.97001 0.96124 1.20442 1.00623 0.94946 1.01708 0.93304 0.88283 0.92520 0.86334 0.92139 0.88486 0.93438 0.90016 0.93449 0.96424 0.91713 0.98015 0.96924 0.95879 0.94353 0.91025 0.82639 0.83528 0.81858 0.83487 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.14 71.98 0.59 -2.61 16 2 C 0.12 2.10 2.64 44.99 0.12 2.22 16 3 C -0.16 -2.62 9.17 71.98 0.66 -1.96 16 4 N -0.59 -16.28 2.40 -797.84 -1.91 -18.20 16 5 C 0.11 4.14 5.15 86.38 0.44 4.58 16 6 C 0.15 6.19 5.69 86.38 0.49 6.68 16 7 N -0.62 -32.29 2.93 -726.92 -2.13 -34.41 16 8 C 0.18 9.93 8.96 127.77 1.15 11.08 16 9 C -0.26 -14.15 9.69 84.03 0.81 -13.34 16 10 H 0.08 4.13 7.86 -2.91 -0.02 4.11 16 11 C -0.06 -3.28 5.13 84.86 0.44 -2.85 16 12 N -0.94 -57.30 10.52 21.65 0.23 -57.07 16 13 Si 0.97 44.80 29.57 68.60 2.03 46.83 16 14 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 15 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 16 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 17 C 0.52 15.43 7.00 87.65 0.61 16.04 16 18 O -0.57 -22.58 14.58 -3.04 -0.04 -22.63 16 19 C -0.09 -2.05 2.55 -11.41 -0.03 -2.07 16 20 H 0.15 2.35 7.91 -2.38 -0.02 2.33 16 21 C 0.06 1.17 6.27 72.56 0.46 1.62 16 22 O -0.31 -6.91 11.10 -95.04 -1.06 -7.97 16 23 C 0.09 2.08 7.04 22.68 0.16 2.24 16 24 C -0.15 -3.00 10.06 22.45 0.23 -2.78 16 25 C -0.08 -1.39 10.02 22.21 0.22 -1.16 16 26 C -0.16 -3.21 10.07 22.31 0.22 -2.99 16 27 C -0.06 -1.61 9.05 22.18 0.20 -1.41 16 28 C -0.18 -4.56 5.44 -19.52 -0.11 -4.66 16 29 H 0.05 1.23 6.17 -2.39 -0.01 1.22 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.12 1.38 3.92 -2.38 -0.01 1.37 16 33 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.99 6.66 -2.39 -0.02 0.98 16 36 H 0.08 2.87 6.43 -2.39 -0.02 2.85 16 37 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 38 H 0.02 0.80 8.07 -2.39 -0.02 0.78 16 39 H 0.06 2.60 5.34 -2.39 -0.01 2.59 16 40 H 0.00 0.09 7.41 -2.38 -0.02 0.07 16 41 H 0.01 0.62 8.03 -2.39 -0.02 0.60 16 42 H 0.02 1.31 7.15 -2.39 -0.02 1.29 16 43 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 44 H 0.07 1.53 7.91 -2.39 -0.02 1.51 16 45 H 0.16 1.54 6.54 -2.39 -0.02 1.52 16 46 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 47 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 49 H 0.11 3.17 7.64 -2.91 -0.02 3.15 16 Total: -1.00 -74.98 384.00 4.72 -70.25 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.94 Total: 14.56 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 6.66 Total: 8.63 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -3.81 Total: -109.68 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.10 Total: -30.59 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.98 4.72 -70.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725733360.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.633 kcal (2) G-P(sol) polarization free energy of solvation -74.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds