Wall clock time and date at job start Tue Mar 31 2020 16:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47549 * 2 1 4 4 N 1.46501 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99674 * 275.30546 * 4 3 2 6 6 H 1.08002 * 120.00256 * 37.57585 * 5 4 3 7 7 C 1.38815 * 120.00135 * 217.57984 * 5 4 3 8 8 N 1.31618 * 119.99767 * 21.41912 * 7 5 4 9 9 Si 1.86795 * 119.99862 * 201.42466 * 7 5 4 10 10 H 1.48498 * 109.47473 * 59.99651 * 9 7 5 11 11 H 1.48500 * 109.46895 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47249 * 299.99231 * 9 7 5 13 13 C 1.46492 * 120.00475 * 95.30251 * 4 3 2 14 14 C 1.53004 * 109.47539 * 270.00520 * 13 4 3 15 15 N 1.46492 * 109.47539 * 180.02562 * 14 13 4 16 16 C 1.34770 * 120.00244 * 179.97438 * 15 14 13 17 17 O 1.21547 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.47853 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.39439 * 119.99820 * 359.97438 * 18 16 15 20 20 C 1.37940 * 119.73093 * 179.97438 * 19 18 16 21 21 C 1.38231 * 120.02207 * 0.15144 * 20 19 18 22 22 C 1.38710 * 120.58795 * 359.96593 * 21 20 19 23 23 C 1.37665 * 119.96873 * 359.81840 * 22 21 20 24 24 C 1.50635 * 121.58100 * 180.31960 * 23 22 21 25 25 O 1.42725 * 110.28825 * 343.97713 * 24 23 22 26 26 C 1.43223 * 113.11996 * 51.63522 * 25 24 23 27 27 C 1.51232 * 118.62570 * 179.60146 * 22 21 20 28 28 H 1.09002 * 109.46440 * 60.00416 * 1 2 3 29 29 H 1.08991 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46820 * 300.00896 * 1 2 3 31 31 H 1.09001 * 109.47298 * 239.98873 * 2 1 3 32 32 H 1.09009 * 109.46760 * 119.99525 * 2 1 3 33 33 H 1.08993 * 109.47449 * 59.99203 * 3 2 1 34 34 H 1.09009 * 109.46702 * 299.99561 * 3 2 1 35 35 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47462 * 150.00189 * 13 4 3 37 37 H 1.09006 * 109.47331 * 30.00199 * 13 4 3 38 38 H 1.08993 * 109.47014 * 59.99395 * 14 13 4 39 39 H 1.09002 * 109.46601 * 299.99654 * 14 13 4 40 40 H 0.97009 * 119.99976 * 359.97438 * 15 14 13 41 41 H 1.07992 * 120.13822 * 0.02562 * 19 18 16 42 42 H 1.08000 * 119.99366 * 180.13464 * 20 19 18 43 43 H 1.07998 * 119.70789 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.33871 * 223.72390 * 24 23 22 45 45 H 1.08995 * 109.20222 * 104.14049 * 24 23 22 46 46 H 1.08999 * 109.63701 * 49.10825 * 26 25 24 47 47 H 1.09000 * 109.63151 * 169.51411 * 26 25 24 48 48 H 1.09003 * 109.68248 * 43.09052 * 27 22 21 49 49 H 1.08995 * 109.41292 * 283.11277 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3325 1.1799 6 1 3.8186 0.6870 1.9620 7 6 5.3624 2.0510 1.3716 8 7 5.6027 3.1236 0.6478 9 14 6.5989 1.4952 2.6568 10 1 7.0675 0.1239 2.3325 11 1 7.7569 2.4247 2.6640 12 1 5.9555 1.4950 3.9952 13 6 4.2372 1.5598 -1.2641 14 6 4.4919 0.1644 -1.8376 15 7 5.2244 0.2818 -3.1008 16 6 5.5616 -0.8264 -3.7898 17 8 5.2574 -1.9232 -3.3634 18 6 6.3004 -0.7078 -5.0649 19 6 6.6480 0.5505 -5.5549 20 6 7.3378 0.6547 -6.7449 21 6 7.6792 -0.4851 -7.4485 22 6 7.3349 -1.7403 -6.9688 23 6 6.6504 -1.8583 -5.7803 24 6 6.2646 -3.2033 -5.2223 25 8 6.3657 -4.2059 -6.2330 26 6 7.6329 -4.2058 -6.9004 27 6 7.7227 -2.9570 -7.7791 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8898 34 1 1.6768 1.9562 -0.8901 35 1 6.4216 3.6258 0.7820 36 1 5.1896 2.0593 -1.0871 37 1 3.6479 2.1418 -1.9728 38 1 3.5394 -0.3351 -2.0146 39 1 5.0812 -0.4176 -1.1290 40 1 5.4669 1.1572 -3.4413 41 1 6.3789 1.4399 -5.0046 42 1 7.6110 1.6271 -7.1273 43 1 8.2189 -0.3977 -8.3798 44 1 5.2385 -3.1616 -4.8567 45 1 6.9315 -3.4539 -4.3975 46 1 8.4354 -4.1934 -6.1628 47 1 7.7199 -5.0975 -7.5213 48 1 8.7431 -2.8442 -8.1453 49 1 7.0439 -3.0599 -8.6256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731866044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:09 Heat of formation + Delta-G solvation = -44.757976 kcal Electronic energy + Delta-G solvation = -28683.110620 eV Core-core repulsion = 24803.286519 eV Total energy + Delta-G solvation = -3879.824102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77320 -38.96839 -37.49931 -36.51447 -34.42931 -33.21517 -32.88220 -31.74794 -30.92114 -29.90293 -28.00433 -25.73266 -25.57575 -24.13013 -24.01552 -22.84193 -20.99867 -20.66373 -20.20848 -19.81866 -17.71675 -16.79419 -16.49267 -16.34561 -15.85126 -15.50141 -15.29775 -15.13173 -14.84296 -14.42919 -14.17263 -14.12917 -13.95873 -13.70441 -13.14241 -13.05823 -12.86285 -12.77585 -12.63306 -12.32276 -12.17828 -11.79703 -11.59343 -11.58645 -11.52090 -11.19927 -10.95646 -10.83527 -10.74841 -10.46884 -10.38155 -10.10786 -9.93236 -9.82923 -9.73034 -9.45720 -9.05768 -8.81195 -8.57802 -8.45179 -6.65145 -5.86783 -3.45429 0.73387 1.11584 2.92588 3.33355 3.39676 3.43338 3.46098 3.70923 3.83097 4.35586 4.43488 4.53188 4.58064 4.73788 4.84847 4.94882 5.06320 5.17605 5.24017 5.30092 5.43660 5.45986 5.54076 5.58934 5.66169 5.68579 5.75172 5.77103 5.87621 6.01227 6.08664 6.10453 6.18393 6.21501 6.26998 6.37713 6.40973 6.52251 6.61134 6.64424 6.67127 6.80901 6.96114 6.97615 7.04763 7.16839 7.49371 7.77383 7.83532 8.43792 8.47442 9.11436 9.73347 10.31193 11.13366 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.002969 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.903613 B = 9429.535242 C =10210.984905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.096 3.904 15 N -0.711 5.711 16 C 0.548 3.452 17 O -0.541 6.541 18 C -0.124 4.124 19 C -0.085 4.085 20 C -0.126 4.126 21 C -0.096 4.096 22 C -0.090 4.090 23 C -0.060 4.060 24 C 0.096 3.904 25 O -0.378 6.378 26 C 0.053 3.947 27 C -0.111 4.111 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.492 -6.342 -17.570 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.010 3.990 14 C -0.029 4.029 15 N -0.361 5.361 16 C 0.335 3.665 17 O -0.421 6.421 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.144 4.144 21 C -0.114 4.114 22 C -0.090 4.090 23 C -0.062 4.062 24 C 0.020 3.980 25 O -0.297 6.297 26 C -0.024 4.024 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.227 -7.067 -17.221 18.892 hybrid contribution 1.147 0.545 0.495 1.363 sum 4.375 -6.521 -16.726 18.478 Atomic orbital electron populations 1.21721 0.97327 1.00428 1.00990 1.22186 0.93825 1.00904 1.01588 1.20943 0.85006 0.93001 0.98929 1.43585 0.99443 1.84807 1.02022 1.18985 1.05699 1.20476 0.93991 0.92080 1.25175 1.00792 0.94505 0.98119 1.69984 1.25735 1.14715 1.42518 0.86470 0.80993 0.78305 0.81660 1.20781 1.21583 1.20574 1.21059 1.00361 0.91131 0.86488 1.22531 0.94918 1.02970 0.82442 1.46074 1.57296 1.08282 1.24463 1.18256 0.79491 0.84857 0.83869 1.90683 1.55908 1.26034 1.69482 1.19960 1.02575 0.93613 0.96558 1.21343 0.96620 0.96451 0.95985 1.21056 0.99320 0.98782 0.95248 1.21235 0.98910 0.91733 0.99527 1.19552 0.99207 0.95203 0.95057 1.20343 0.95758 0.96058 0.93999 1.21990 1.05312 0.82256 0.88409 1.88139 1.34285 1.54702 1.52575 1.22607 0.86848 0.97531 0.95397 1.21193 1.02363 0.92756 0.98506 0.93473 0.93784 0.93210 0.92926 0.92349 0.93555 0.94762 0.93465 0.88390 0.95307 0.92721 0.91509 0.76873 0.85103 0.85217 0.85640 0.84665 0.91039 0.92746 0.88522 0.89690 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.81 16 2 C -0.15 -2.64 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.03 5.72 -4.04 -0.02 3.01 16 4 N -0.58 -13.79 2.43 -173.24 -0.42 -14.21 16 5 C -0.26 -6.93 9.45 -15.06 -0.14 -7.07 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.38 11.47 55.49 0.64 -23.74 16 9 Si 0.90 21.23 29.60 -169.99 -5.03 16.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.99 5.45 -4.04 -0.02 2.96 16 14 C 0.10 1.92 6.00 -4.04 -0.02 1.90 16 15 N -0.71 -11.87 5.50 -61.26 -0.34 -12.21 16 16 C 0.55 9.34 7.73 -12.33 -0.10 9.24 16 17 O -0.54 -10.64 13.17 5.32 0.07 -10.57 16 18 C -0.12 -1.76 5.88 -104.88 -0.62 -2.38 16 19 C -0.09 -0.99 9.54 -39.24 -0.37 -1.36 16 20 C -0.13 -1.23 10.03 -39.69 -0.40 -1.63 16 21 C -0.10 -0.92 9.66 -39.41 -0.38 -1.30 16 22 C -0.09 -1.02 5.78 -104.40 -0.60 -1.62 16 23 C -0.06 -0.83 5.83 -104.23 -0.61 -1.44 16 24 C 0.10 1.39 5.19 35.97 0.19 1.58 16 25 O -0.38 -5.11 10.81 -35.23 -0.38 -5.49 16 26 C 0.05 0.51 6.83 37.14 0.25 0.77 16 27 C -0.11 -0.96 6.04 -27.64 -0.17 -1.13 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.98 6.64 -51.93 -0.34 0.64 16 32 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.66 7.83 -51.92 -0.41 0.25 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.10 2.39 5.52 -51.93 -0.29 2.11 16 37 H 0.03 0.58 7.86 -51.93 -0.41 0.18 16 38 H 0.05 1.11 6.64 -51.93 -0.34 0.77 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.40 5.62 6.49 -40.82 -0.27 5.36 16 41 H 0.13 1.30 6.39 -52.49 -0.34 0.96 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.14 2.21 6.05 -51.93 -0.31 1.90 16 45 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 46 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 389.67 15.07 5.87 5.87 Total: -1.00 -30.43 389.67 -10.23 -40.67 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.74 Total: 6.28 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.90 Total: -2.79 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.12 Total: -50.17 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.31 Total: -16.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.43 -10.23 -40.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.092 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds