Wall clock time and date at job start Tue Mar 31 2020 16:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47549 * 2 1 4 4 N 1.46501 * 109.47399 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99674 * 275.30546 * 4 3 2 6 6 H 1.08002 * 120.00256 * 37.57585 * 5 4 3 7 7 C 1.38815 * 120.00135 * 217.57984 * 5 4 3 8 8 N 1.31618 * 119.99767 * 21.41912 * 7 5 4 9 9 Si 1.86795 * 119.99862 * 201.42466 * 7 5 4 10 10 H 1.48498 * 109.47473 * 59.99651 * 9 7 5 11 11 H 1.48500 * 109.46895 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47249 * 299.99231 * 9 7 5 13 13 C 1.46492 * 120.00475 * 95.30251 * 4 3 2 14 14 C 1.53004 * 109.47539 * 270.00520 * 13 4 3 15 15 N 1.46492 * 109.47539 * 180.02562 * 14 13 4 16 16 C 1.34770 * 120.00244 * 179.97438 * 15 14 13 17 17 O 1.21547 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.47853 * 120.00084 * 179.97438 * 16 15 14 19 19 C 1.39439 * 119.99820 * 359.97438 * 18 16 15 20 20 C 1.37940 * 119.73093 * 179.97438 * 19 18 16 21 21 C 1.38231 * 120.02207 * 0.15144 * 20 19 18 22 22 C 1.38710 * 120.58795 * 359.96593 * 21 20 19 23 23 C 1.37665 * 119.96873 * 359.81840 * 22 21 20 24 24 C 1.50635 * 121.58100 * 180.31960 * 23 22 21 25 25 O 1.42725 * 110.28825 * 343.97713 * 24 23 22 26 26 C 1.43223 * 113.11996 * 51.63522 * 25 24 23 27 27 C 1.51232 * 118.62570 * 179.60146 * 22 21 20 28 28 H 1.09002 * 109.46440 * 60.00416 * 1 2 3 29 29 H 1.08991 * 109.47460 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46820 * 300.00896 * 1 2 3 31 31 H 1.09001 * 109.47298 * 239.98873 * 2 1 3 32 32 H 1.09009 * 109.46760 * 119.99525 * 2 1 3 33 33 H 1.08993 * 109.47449 * 59.99203 * 3 2 1 34 34 H 1.09009 * 109.46702 * 299.99561 * 3 2 1 35 35 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.47462 * 150.00189 * 13 4 3 37 37 H 1.09006 * 109.47331 * 30.00199 * 13 4 3 38 38 H 1.08993 * 109.47014 * 59.99395 * 14 13 4 39 39 H 1.09002 * 109.46601 * 299.99654 * 14 13 4 40 40 H 0.97009 * 119.99976 * 359.97438 * 15 14 13 41 41 H 1.07992 * 120.13822 * 0.02562 * 19 18 16 42 42 H 1.08000 * 119.99366 * 180.13464 * 20 19 18 43 43 H 1.07998 * 119.70789 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.33871 * 223.72390 * 24 23 22 45 45 H 1.08995 * 109.20222 * 104.14049 * 24 23 22 46 46 H 1.08999 * 109.63701 * 49.10825 * 26 25 24 47 47 H 1.09000 * 109.63151 * 169.51411 * 26 25 24 48 48 H 1.09003 * 109.68248 * 43.09052 * 27 22 21 49 49 H 1.08995 * 109.41292 * 283.11277 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.3325 1.1799 6 1 3.8186 0.6870 1.9620 7 6 5.3624 2.0510 1.3716 8 7 5.6027 3.1236 0.6478 9 14 6.5989 1.4952 2.6568 10 1 7.0675 0.1239 2.3325 11 1 7.7569 2.4247 2.6640 12 1 5.9555 1.4950 3.9952 13 6 4.2372 1.5598 -1.2641 14 6 4.4919 0.1644 -1.8376 15 7 5.2244 0.2818 -3.1008 16 6 5.5616 -0.8264 -3.7898 17 8 5.2574 -1.9232 -3.3634 18 6 6.3004 -0.7078 -5.0649 19 6 6.6480 0.5505 -5.5549 20 6 7.3378 0.6547 -6.7449 21 6 7.6792 -0.4851 -7.4485 22 6 7.3349 -1.7403 -6.9688 23 6 6.6504 -1.8583 -5.7803 24 6 6.2646 -3.2033 -5.2223 25 8 6.3657 -4.2059 -6.2330 26 6 7.6329 -4.2058 -6.9004 27 6 7.7227 -2.9570 -7.7791 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8898 34 1 1.6768 1.9562 -0.8901 35 1 6.4216 3.6258 0.7820 36 1 5.1896 2.0593 -1.0871 37 1 3.6479 2.1418 -1.9728 38 1 3.5394 -0.3351 -2.0146 39 1 5.0812 -0.4176 -1.1290 40 1 5.4669 1.1572 -3.4413 41 1 6.3789 1.4399 -5.0046 42 1 7.6110 1.6271 -7.1273 43 1 8.2189 -0.3977 -8.3798 44 1 5.2385 -3.1616 -4.8567 45 1 6.9315 -3.4539 -4.3975 46 1 8.4354 -4.1934 -6.1628 47 1 7.7199 -5.0975 -7.5213 48 1 8.7431 -2.8442 -8.1453 49 1 7.0439 -3.0599 -8.6256 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731866044.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:08 Heat of formation + Delta-G solvation = -62.406878 kcal Electronic energy + Delta-G solvation = -28683.875934 eV Core-core repulsion = 24803.286519 eV Total energy + Delta-G solvation = -3880.589415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.81170 -40.19413 -38.47063 -38.23644 -35.92228 -34.63141 -34.07329 -32.67612 -32.66007 -30.99722 -29.45580 -27.35517 -26.75406 -25.52450 -24.84346 -24.16702 -22.61475 -21.96578 -21.60718 -20.93583 -18.97443 -18.43156 -17.52184 -17.45226 -17.07945 -16.81817 -16.73551 -16.36837 -16.13249 -15.92335 -15.65495 -15.42166 -15.06163 -14.74753 -14.64829 -14.40347 -14.32381 -13.96292 -13.72666 -13.38026 -13.24854 -13.08562 -13.00352 -12.93749 -12.65123 -12.62040 -12.54341 -12.50141 -12.23059 -12.05153 -11.88858 -11.71728 -11.63310 -11.33254 -10.91023 -10.66123 -10.54920 -10.21981 -9.78447 -9.67334 -8.60791 -7.87838 -5.50503 -0.22931 0.25480 1.42657 1.46284 1.52176 1.78497 2.09096 2.48630 2.70950 2.90975 3.19733 3.52533 3.59029 3.61656 3.77958 3.89547 4.10564 4.16954 4.19854 4.27847 4.31698 4.35413 4.36013 4.46629 4.50796 4.58997 4.66458 4.69761 4.75127 4.79120 4.84052 4.85737 4.91475 4.97802 5.06474 5.13497 5.21084 5.24780 5.25614 5.34149 5.39177 5.42287 5.48888 5.61142 5.63556 5.71240 5.85775 6.09777 6.42210 6.51028 7.10578 7.15685 7.80526 8.32912 9.07994 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.002969 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.903613 B = 9429.535242 C =10210.984905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.146 3.854 14 C 0.120 3.880 15 N -0.706 5.706 16 C 0.545 3.455 17 O -0.577 6.577 18 C -0.147 4.147 19 C -0.089 4.089 20 C -0.120 4.120 21 C -0.083 4.083 22 C -0.098 4.098 23 C -0.083 4.083 24 C 0.105 3.895 25 O -0.397 6.397 26 C 0.042 3.958 27 C -0.107 4.107 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.410 0.590 41 H 0.143 0.857 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.107 0.893 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.123 0.877 48 H 0.117 0.883 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 -5.714 -20.412 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.403 4.403 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.214 1.214 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.357 5.357 16 C 0.334 3.666 17 O -0.459 6.459 18 C -0.151 4.151 19 C -0.108 4.108 20 C -0.138 4.138 21 C -0.101 4.101 22 C -0.098 4.098 23 C -0.084 4.084 24 C 0.029 3.971 25 O -0.317 6.317 26 C -0.034 4.034 27 C -0.143 4.143 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.247 0.753 41 H 0.161 0.839 42 H 0.182 0.818 43 H 0.183 0.817 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.169 -6.428 -20.083 21.495 hybrid contribution 0.867 0.317 1.272 1.572 sum 5.036 -6.111 -18.811 20.410 Atomic orbital electron populations 1.21653 0.94228 1.01770 1.02024 1.22018 0.96451 0.98805 1.00203 1.21052 0.83306 0.94494 0.99120 1.43817 1.00860 1.85065 1.01921 1.19118 1.06363 1.20033 0.94758 0.93139 1.25728 1.02006 0.94682 0.99983 1.70069 1.25964 1.15392 1.43751 0.85638 0.79192 0.77380 0.80032 1.21443 1.21256 1.19965 1.20918 0.99293 0.91717 0.86233 1.21980 0.94313 1.01205 0.83108 1.45876 1.57210 1.09227 1.23382 1.18823 0.78991 0.84073 0.84737 1.90668 1.57266 1.27315 1.70642 1.19779 1.04360 0.95300 0.95626 1.21566 0.96647 0.95560 0.97003 1.21494 0.97658 1.00606 0.93997 1.21709 0.97424 0.90608 1.00371 1.19942 0.98364 0.97327 0.94161 1.20373 0.97448 0.95032 0.95563 1.21594 1.03238 0.83719 0.88572 1.88092 1.36644 1.54445 1.52471 1.22948 0.85106 0.99651 0.95716 1.21270 1.04454 0.90704 0.97895 0.92084 0.92320 0.92521 0.93736 0.94320 0.94540 0.93216 0.93634 0.90729 0.93665 0.93198 0.95090 0.75293 0.83914 0.81780 0.81736 0.87572 0.92814 0.92822 0.85899 0.86441 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.13 -4.95 6.23 30.59 0.19 -4.76 16 3 C 0.15 6.03 5.72 86.38 0.49 6.52 16 4 N -0.60 -29.08 2.43 -702.01 -1.71 -30.78 16 5 C -0.27 -14.81 9.45 84.03 0.79 -14.02 16 6 H 0.05 2.80 7.92 -2.91 -0.02 2.77 16 7 C -0.03 -1.40 4.95 84.86 0.42 -0.98 16 8 N -0.91 -50.66 11.47 21.65 0.25 -50.41 16 9 Si 0.95 44.44 29.60 68.60 2.03 46.47 16 10 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 C 0.15 6.49 5.45 86.38 0.47 6.96 16 14 C 0.12 5.01 6.00 86.38 0.52 5.53 16 15 N -0.71 -24.40 5.50 -466.00 -2.57 -26.97 16 16 C 0.54 19.50 7.73 86.79 0.67 20.17 16 17 O -0.58 -24.45 13.17 -3.86 -0.05 -24.50 16 18 C -0.15 -4.24 5.88 -20.03 -0.12 -4.36 16 19 C -0.09 -1.92 9.54 22.49 0.21 -1.70 16 20 C -0.12 -1.88 10.03 22.20 0.22 -1.66 16 21 C -0.08 -1.24 9.66 22.38 0.22 -1.02 16 22 C -0.10 -1.97 5.78 -19.72 -0.11 -2.08 16 23 C -0.08 -2.29 5.83 -19.61 -0.11 -2.40 16 24 C 0.10 3.25 5.19 71.22 0.37 3.62 16 25 O -0.40 -10.93 10.81 -148.98 -1.61 -12.54 16 26 C 0.04 0.74 6.83 71.97 0.49 1.24 16 27 C -0.11 -1.50 6.04 30.00 0.18 -1.32 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.69 6.64 -2.39 -0.02 1.67 16 32 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 34 H 0.05 1.88 7.83 -2.38 -0.02 1.87 16 35 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.07 3.74 5.52 -2.39 -0.01 3.73 16 37 H 0.05 1.84 7.86 -2.38 -0.02 1.82 16 38 H 0.05 2.12 6.64 -2.39 -0.02 2.10 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.41 11.74 6.49 -92.70 -0.60 11.13 16 41 H 0.14 2.60 6.39 -2.91 -0.02 2.58 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.11 3.85 6.05 -2.39 -0.01 3.83 16 45 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 46 H 0.05 0.95 8.07 -2.39 -0.02 0.93 16 47 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -69.37 389.67 2.32 -67.05 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.35 Total: 25.14 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.62 Total: 6.54 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.03 Total: -108.16 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.66 Total: -37.04 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.37 2.32 -67.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731866044.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.648 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds