Wall clock time and date at job start Tue Mar 31 2020 16:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46966 * 2 1 4 4 H 1.08994 * 109.46996 * 304.99640 * 3 2 1 5 5 O 1.42905 * 109.47403 * 64.99784 * 3 2 1 6 6 C 1.35897 * 116.99483 * 260.30322 * 5 3 2 7 7 C 1.38751 * 120.06133 * 5.62225 * 6 5 3 8 8 C 1.38123 * 119.94388 * 180.02562 * 7 6 5 9 9 C 1.38283 * 120.05683 * 359.97438 * 8 7 6 10 10 C 1.38242 * 120.11413 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.97340 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.05334 * 359.76292 * 10 9 8 13 13 C 1.50700 * 109.46869 * 184.99479 * 3 2 1 14 14 O 1.21284 * 120.00378 * 244.99875 * 13 3 2 15 15 N 1.34775 * 120.00076 * 64.99880 * 13 3 2 16 16 C 1.46497 * 120.00524 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47448 * 180.02562 * 16 15 13 18 18 H 1.08995 * 113.04014 * 53.25094 * 17 16 15 19 19 C 1.53949 * 113.76730 * 184.99855 * 17 16 15 20 20 C 1.53946 * 86.40754 * 137.95974 * 19 17 16 21 21 N 1.47582 * 86.11806 * 336.34166 * 20 19 17 22 22 C 1.36931 * 134.49637 * 204.63986 * 21 20 19 23 23 H 1.07996 * 120.00508 * 171.36457 * 22 21 20 24 24 C 1.38814 * 119.99773 * 351.36989 * 22 21 20 25 25 N 1.31622 * 120.00285 * 351.92175 * 24 22 21 26 26 Si 1.86806 * 120.00164 * 171.92427 * 24 22 21 27 27 H 1.48502 * 109.47002 * 94.97305 * 26 24 22 28 28 H 1.48497 * 109.47176 * 214.97245 * 26 24 22 29 29 H 1.48498 * 109.47191 * 334.97100 * 26 24 22 30 30 H 1.08998 * 109.46677 * 60.00350 * 1 2 3 31 31 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47378 * 300.00342 * 1 2 3 33 33 H 1.08998 * 109.47378 * 239.99658 * 2 1 3 34 34 H 1.09008 * 109.46723 * 119.99522 * 2 1 3 35 35 H 1.07995 * 120.02450 * 359.97438 * 7 6 5 36 36 H 1.08007 * 119.96894 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.94300 * 180.02562 * 9 8 7 38 38 H 1.09009 * 109.47126 * 89.99947 * 11 10 9 39 39 H 1.08997 * 109.47401 * 209.99238 * 11 10 9 40 40 H 1.08995 * 109.47540 * 329.99978 * 11 10 9 41 41 H 1.07997 * 120.02586 * 180.25806 * 12 10 9 42 42 H 0.97003 * 119.99914 * 359.97438 * 15 13 3 43 43 H 1.09004 * 109.46882 * 59.99413 * 16 15 13 44 44 H 1.09006 * 109.46772 * 300.00607 * 16 15 13 45 45 H 1.09006 * 113.74412 * 23.56280 * 19 17 16 46 46 H 1.08992 * 113.74193 * 252.36044 * 19 17 16 47 47 H 1.09004 * 113.76691 * 90.63894 * 20 19 17 48 48 H 1.08995 * 113.77242 * 222.03538 * 20 19 17 49 49 H 0.96990 * 120.00632 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0815 1.2210 6 6 0.5700 2.8896 1.1820 7 6 -0.1915 2.9735 0.0252 8 6 -1.3006 3.7960 -0.0120 9 6 -1.6524 4.5351 1.1026 10 6 -0.8954 4.4532 2.2564 11 6 -1.2820 5.2595 3.4693 12 6 0.2124 3.6286 2.3001 13 6 3.5419 1.4443 -0.1237 14 8 4.2250 1.8611 0.7877 15 7 4.1261 0.9827 -1.2471 16 6 5.5861 0.9849 -1.3677 17 6 5.9863 0.4145 -2.7298 18 1 5.4917 0.9134 -3.5632 19 6 7.5066 0.2578 -2.9145 20 6 7.1895 -1.0992 -3.5687 21 7 5.9300 -1.0620 -2.8004 22 6 5.0592 -2.0124 -2.3385 23 1 4.2600 -1.7325 -1.6682 24 6 5.2037 -3.3358 -2.7317 25 7 6.0729 -3.6532 -3.6677 26 14 4.1645 -4.6665 -1.9323 27 1 2.9607 -4.9208 -2.7639 28 1 4.9605 -5.9150 -1.8190 29 1 3.7462 -4.2217 -0.5787 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.0831 2.3969 -0.8456 36 1 -1.8939 3.8614 -0.9121 37 1 -2.5202 5.1773 1.0716 38 1 -1.9616 4.6769 4.0914 39 1 -0.3879 5.5069 4.0414 40 1 -1.7764 6.1779 3.1527 41 1 0.8011 3.5619 3.2031 42 1 3.5798 0.6490 -1.9759 43 1 6.0169 0.3721 -0.5759 44 1 5.9564 2.0063 -1.2788 45 1 8.0564 0.1751 -1.9768 46 1 7.9426 0.9843 -3.6000 47 1 7.0475 -1.0440 -4.6480 48 1 7.8643 -1.9005 -3.2676 49 1 6.1736 -4.5778 -3.9428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733225614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:52 Heat of formation + Delta-G solvation = 0.339749 kcal Electronic energy + Delta-G solvation = -28766.671007 eV Core-core repulsion = 24888.802490 eV Total energy + Delta-G solvation = -3877.868517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81304 -39.34745 -38.11235 -37.45089 -34.35667 -33.58749 -32.73184 -32.22280 -30.37250 -28.72124 -27.91596 -27.21450 -26.56049 -23.40620 -22.76576 -22.58305 -22.42055 -21.19066 -19.97745 -19.13130 -18.32669 -17.49883 -16.54215 -16.20478 -15.95839 -15.66884 -15.40029 -15.20778 -14.65695 -14.46855 -14.22614 -14.00263 -13.87560 -13.69343 -13.37600 -13.33390 -13.07172 -12.92808 -12.51094 -12.24196 -12.13449 -11.91190 -11.82757 -11.74929 -11.44736 -11.29835 -11.19533 -11.10785 -10.97286 -10.77696 -10.61657 -10.56246 -10.10689 -9.79652 -9.64065 -9.35254 -8.97405 -8.81136 -8.67090 -8.27340 -6.94250 -5.83608 -3.14654 1.12649 1.28567 2.67499 2.79452 3.33161 3.40419 3.41786 3.56987 3.68258 4.37915 4.49207 4.60721 4.64236 4.68197 4.78101 4.91248 5.02347 5.07684 5.09958 5.18709 5.28988 5.32590 5.34161 5.36300 5.50372 5.55334 5.56905 5.65011 5.67463 5.86418 5.86677 5.89566 5.96422 6.03214 6.11388 6.20163 6.24647 6.25669 6.35588 6.39270 6.56397 6.59206 6.65599 6.81133 7.16321 7.27973 7.35875 7.49877 7.76467 7.91907 8.42719 8.98326 9.65491 10.55341 11.34340 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002856 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.640575 B = 9801.724812 C =10846.375101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.067 3.933 4 H 0.101 0.899 5 O -0.281 6.281 6 C 0.140 3.860 7 C -0.219 4.219 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.154 4.154 13 C 0.510 3.490 14 O -0.528 6.528 15 N -0.709 5.709 16 C 0.125 3.875 17 C 0.123 3.877 18 H 0.050 0.950 19 C -0.156 4.156 20 C 0.166 3.834 21 N -0.601 5.601 22 C -0.222 4.222 23 H 0.078 0.922 24 C -0.005 4.005 25 N -0.917 5.917 26 Si 0.904 3.096 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.403 0.597 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.033 0.967 48 H 0.058 0.942 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.542 15.476 6.253 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.007 3.993 4 H 0.118 0.882 5 O -0.193 6.193 6 C 0.095 3.905 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.049 4.049 11 C -0.171 4.171 12 C -0.173 4.173 13 C 0.294 3.706 14 O -0.405 6.405 15 N -0.361 5.361 16 C 0.001 3.999 17 C 0.016 3.984 18 H 0.067 0.933 19 C -0.195 4.195 20 C 0.041 3.959 21 N -0.328 5.328 22 C -0.350 4.350 23 H 0.096 0.904 24 C -0.202 4.202 25 N -0.564 5.564 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.238 0.762 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.077 0.923 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.014 15.385 7.115 21.370 hybrid contribution -0.950 -1.152 -0.413 1.549 sum -13.963 14.233 6.702 21.035 Atomic orbital electron populations 1.21909 0.94573 1.02595 1.02017 1.22005 0.97181 0.93639 1.05010 1.22427 0.93562 0.95499 0.87841 0.88174 1.86222 1.42486 1.57863 1.32713 1.19075 0.86758 0.90325 0.94384 1.21378 0.98891 1.04990 0.98495 1.20901 0.95625 0.94660 0.98181 1.20906 1.01250 1.02729 0.93322 1.19690 0.93778 0.95765 0.95685 1.20805 1.02118 0.98990 0.95199 1.20309 0.99524 0.99360 0.98060 1.20166 0.89015 0.78500 0.82957 1.90707 1.64768 1.46270 1.38707 1.45876 1.08837 1.63528 1.17834 1.21788 0.78418 1.00138 0.99565 1.22562 0.94745 0.87742 0.93341 0.93256 1.23762 0.94980 0.99725 1.01036 1.22050 0.87454 0.92364 0.94031 1.46266 1.25320 0.98470 1.62735 1.18929 1.08308 0.86715 1.21000 0.90400 1.24806 0.99681 0.97426 0.98308 1.69838 1.38097 1.17466 1.30953 0.86235 0.79484 0.81964 0.78915 1.21632 1.21586 1.20476 0.92374 0.91772 0.92234 0.88985 0.89903 0.84967 0.85821 0.86112 0.90927 0.91287 0.91361 0.85184 0.76206 0.90840 0.92011 0.90501 0.92657 0.94907 0.92315 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.49 37.16 0.32 -1.34 16 2 C -0.14 -1.81 5.61 -26.73 -0.15 -1.96 16 3 C 0.07 0.92 2.53 -27.88 -0.07 0.85 16 4 H 0.10 1.13 5.41 -51.93 -0.28 0.85 16 5 O -0.28 -4.26 9.11 -39.28 -0.36 -4.62 16 6 C 0.14 1.82 5.66 -39.22 -0.22 1.60 16 7 C -0.22 -2.39 7.39 -39.43 -0.29 -2.68 16 8 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 9 C -0.16 -1.51 9.70 -39.56 -0.38 -1.89 16 10 C -0.05 -0.48 5.88 -104.65 -0.62 -1.10 16 11 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 12 C -0.15 -1.83 9.64 -39.43 -0.38 -2.21 16 13 C 0.51 8.67 7.18 -10.99 -0.08 8.59 16 14 O -0.53 -11.05 16.51 -14.31 -0.24 -11.29 16 15 N -0.71 -11.53 5.46 -60.29 -0.33 -11.86 16 16 C 0.13 2.20 5.55 -4.04 -0.02 2.17 16 17 C 0.12 2.29 4.35 -66.66 -0.29 2.00 16 18 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.16 -2.75 7.85 -25.80 -0.20 -2.96 16 20 C 0.17 3.72 7.29 -2.97 -0.02 3.70 16 21 N -0.60 -14.23 3.57 -170.46 -0.61 -14.84 16 22 C -0.22 -5.77 10.50 -15.06 -0.16 -5.93 16 23 H 0.08 1.93 7.84 -52.49 -0.41 1.52 16 24 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 25 N -0.92 -26.50 11.84 55.49 0.66 -25.84 16 26 Si 0.90 21.52 29.56 -169.99 -5.03 16.50 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.06 0.54 6.75 -51.93 -0.35 0.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 33 H 0.09 1.18 7.77 -51.93 -0.40 0.78 16 34 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.13 1.28 4.30 -52.49 -0.23 1.05 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 39 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 41 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.40 6.02 8.18 -40.82 -0.33 5.69 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.06 1.45 7.78 -51.93 -0.40 1.04 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -32.69 397.00 -10.42 -43.10 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.80 Total: 5.82 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.70 Total: -2.95 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.28 Total: -52.54 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.59 Total: -15.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.69 -10.42 -43.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733225614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds