Wall clock time and date at job start Tue Mar 31 2020 16:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46966 * 2 1 4 4 H 1.08994 * 109.46996 * 304.99640 * 3 2 1 5 5 O 1.42905 * 109.47403 * 64.99784 * 3 2 1 6 6 C 1.35897 * 116.99483 * 260.30322 * 5 3 2 7 7 C 1.38751 * 120.06133 * 5.62225 * 6 5 3 8 8 C 1.38123 * 119.94388 * 180.02562 * 7 6 5 9 9 C 1.38283 * 120.05683 * 359.97438 * 8 7 6 10 10 C 1.38242 * 120.11413 * 0.02562 * 9 8 7 11 11 C 1.50693 * 119.97340 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.05334 * 359.76292 * 10 9 8 13 13 C 1.50700 * 109.46869 * 184.99479 * 3 2 1 14 14 O 1.21284 * 120.00378 * 244.99875 * 13 3 2 15 15 N 1.34775 * 120.00076 * 64.99880 * 13 3 2 16 16 C 1.46497 * 120.00524 * 179.97438 * 15 13 3 17 17 C 1.52998 * 109.47448 * 180.02562 * 16 15 13 18 18 H 1.08995 * 113.04014 * 53.25094 * 17 16 15 19 19 C 1.53949 * 113.76730 * 184.99855 * 17 16 15 20 20 C 1.53946 * 86.40754 * 137.95974 * 19 17 16 21 21 N 1.47582 * 86.11806 * 336.34166 * 20 19 17 22 22 C 1.36931 * 134.49637 * 204.63986 * 21 20 19 23 23 H 1.07996 * 120.00508 * 171.36457 * 22 21 20 24 24 C 1.38814 * 119.99773 * 351.36989 * 22 21 20 25 25 N 1.31622 * 120.00285 * 351.92175 * 24 22 21 26 26 Si 1.86806 * 120.00164 * 171.92427 * 24 22 21 27 27 H 1.48502 * 109.47002 * 94.97305 * 26 24 22 28 28 H 1.48497 * 109.47176 * 214.97245 * 26 24 22 29 29 H 1.48498 * 109.47191 * 334.97100 * 26 24 22 30 30 H 1.08998 * 109.46677 * 60.00350 * 1 2 3 31 31 H 1.08997 * 109.47019 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47378 * 300.00342 * 1 2 3 33 33 H 1.08998 * 109.47378 * 239.99658 * 2 1 3 34 34 H 1.09008 * 109.46723 * 119.99522 * 2 1 3 35 35 H 1.07995 * 120.02450 * 359.97438 * 7 6 5 36 36 H 1.08007 * 119.96894 * 180.02562 * 8 7 6 37 37 H 1.08000 * 119.94300 * 180.02562 * 9 8 7 38 38 H 1.09009 * 109.47126 * 89.99947 * 11 10 9 39 39 H 1.08997 * 109.47401 * 209.99238 * 11 10 9 40 40 H 1.08995 * 109.47540 * 329.99978 * 11 10 9 41 41 H 1.07997 * 120.02586 * 180.25806 * 12 10 9 42 42 H 0.97003 * 119.99914 * 359.97438 * 15 13 3 43 43 H 1.09004 * 109.46882 * 59.99413 * 16 15 13 44 44 H 1.09006 * 109.46772 * 300.00607 * 16 15 13 45 45 H 1.09006 * 113.74412 * 23.56280 * 19 17 16 46 46 H 1.08992 * 113.74193 * 252.36044 * 19 17 16 47 47 H 1.09004 * 113.76691 * 90.63894 * 20 19 17 48 48 H 1.08995 * 113.77242 * 222.03538 * 20 19 17 49 49 H 0.96990 * 120.00632 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6619 2.0815 1.2210 6 6 0.5700 2.8896 1.1820 7 6 -0.1915 2.9735 0.0252 8 6 -1.3006 3.7960 -0.0120 9 6 -1.6524 4.5351 1.1026 10 6 -0.8954 4.4532 2.2564 11 6 -1.2820 5.2595 3.4693 12 6 0.2124 3.6286 2.3001 13 6 3.5419 1.4443 -0.1237 14 8 4.2250 1.8611 0.7877 15 7 4.1261 0.9827 -1.2471 16 6 5.5861 0.9849 -1.3677 17 6 5.9863 0.4145 -2.7298 18 1 5.4917 0.9134 -3.5632 19 6 7.5066 0.2578 -2.9145 20 6 7.1895 -1.0992 -3.5687 21 7 5.9300 -1.0620 -2.8004 22 6 5.0592 -2.0124 -2.3385 23 1 4.2600 -1.7325 -1.6682 24 6 5.2037 -3.3358 -2.7317 25 7 6.0729 -3.6532 -3.6677 26 14 4.1645 -4.6665 -1.9323 27 1 2.9607 -4.9208 -2.7639 28 1 4.9605 -5.9150 -1.8190 29 1 3.7462 -4.2217 -0.5787 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.0831 2.3969 -0.8456 36 1 -1.8939 3.8614 -0.9121 37 1 -2.5202 5.1773 1.0716 38 1 -1.9616 4.6769 4.0914 39 1 -0.3879 5.5069 4.0414 40 1 -1.7764 6.1779 3.1527 41 1 0.8011 3.5619 3.2031 42 1 3.5798 0.6490 -1.9759 43 1 6.0169 0.3721 -0.5759 44 1 5.9564 2.0063 -1.2788 45 1 8.0564 0.1751 -1.9768 46 1 7.9426 0.9843 -3.6000 47 1 7.0475 -1.0440 -4.6480 48 1 7.8643 -1.9005 -3.2676 49 1 6.1736 -4.5778 -3.9428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733225614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:51 Heat of formation + Delta-G solvation = -18.506883 kcal Electronic energy + Delta-G solvation = -28767.488258 eV Core-core repulsion = 24888.802490 eV Total energy + Delta-G solvation = -3878.685769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.85234 -40.56891 -39.58754 -38.54504 -35.74345 -34.71499 -34.16099 -33.43435 -31.21408 -30.11827 -29.72057 -27.92282 -27.74673 -25.28024 -23.93587 -23.56549 -23.47583 -22.34997 -21.23625 -20.70307 -19.29107 -18.88920 -18.15044 -17.22015 -17.15506 -16.93305 -16.66112 -16.53403 -15.95241 -15.73596 -15.56218 -15.35269 -14.89636 -14.77012 -14.67285 -14.45394 -14.16026 -13.77921 -13.62845 -13.37303 -13.28845 -13.05795 -12.99484 -12.92402 -12.75060 -12.65664 -12.57510 -12.49569 -12.31931 -12.11886 -11.94463 -11.83598 -11.53568 -11.49796 -11.34439 -10.80825 -10.75297 -10.11815 -9.73877 -9.12883 -8.88298 -7.88910 -5.18714 0.36273 0.47872 1.41192 1.42982 1.46156 1.53282 1.62159 2.45264 2.53726 2.79869 3.29485 3.36690 3.50086 3.59123 3.67819 3.90990 3.93702 3.98490 4.08696 4.13019 4.21407 4.33823 4.34826 4.39125 4.45668 4.55531 4.61150 4.66448 4.71352 4.83520 4.86185 4.87893 4.94975 4.99206 5.04050 5.06317 5.09786 5.23522 5.24927 5.31244 5.36703 5.38717 5.50058 5.58425 5.65648 5.73782 5.85130 5.95898 6.33215 6.49280 6.95151 7.09884 7.65499 8.61259 9.29603 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016064 B = 0.002856 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.640575 B = 9801.724812 C =10846.375101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C 0.075 3.925 4 H 0.129 0.871 5 O -0.308 6.308 6 C 0.113 3.887 7 C -0.223 4.223 8 C -0.076 4.076 9 C -0.163 4.163 10 C -0.053 4.053 11 C -0.114 4.114 12 C -0.177 4.177 13 C 0.507 3.493 14 O -0.573 6.573 15 N -0.702 5.702 16 C 0.133 3.867 17 C 0.132 3.868 18 H 0.073 0.927 19 C -0.131 4.131 20 C 0.158 3.842 21 N -0.629 5.629 22 C -0.212 4.212 23 H 0.086 0.914 24 C -0.068 4.068 25 N -0.954 5.954 26 Si 0.961 3.039 27 H -0.283 1.283 28 H -0.302 1.302 29 H -0.272 1.272 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.412 0.588 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.025 0.975 48 H 0.025 0.975 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 17.705 5.787 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.015 3.985 4 H 0.146 0.854 5 O -0.222 6.222 6 C 0.068 3.932 7 C -0.242 4.242 8 C -0.093 4.093 9 C -0.181 4.181 10 C -0.053 4.053 11 C -0.170 4.170 12 C -0.196 4.196 13 C 0.293 3.707 14 O -0.452 6.452 15 N -0.354 5.354 16 C 0.008 3.992 17 C 0.026 3.974 18 H 0.090 0.910 19 C -0.170 4.170 20 C 0.032 3.968 21 N -0.355 5.355 22 C -0.341 4.341 23 H 0.104 0.896 24 C -0.261 4.261 25 N -0.603 5.603 26 Si 0.791 3.209 27 H -0.210 1.210 28 H -0.229 1.229 29 H -0.197 1.197 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.248 0.752 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.042 0.958 48 H 0.043 0.957 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.529 17.651 6.646 24.431 hybrid contribution -0.197 -1.712 -0.229 1.738 sum -15.726 15.939 6.416 23.292 Atomic orbital electron populations 1.21865 0.92629 1.03194 1.02671 1.21984 0.98833 0.92810 1.03914 1.22390 0.91024 0.96325 0.88738 0.85400 1.86180 1.43860 1.58760 1.33360 1.19343 0.86975 0.91122 0.95755 1.21526 0.99156 1.05487 0.97982 1.21289 0.95087 0.93620 0.99340 1.21304 1.01604 1.02447 0.92729 1.20034 0.92945 0.95196 0.97116 1.20866 1.02445 0.99445 0.94275 1.20490 1.00711 1.00526 0.97855 1.20791 0.90472 0.77279 0.82164 1.90680 1.66104 1.48299 1.40163 1.45820 1.08453 1.63088 1.18033 1.21597 0.79217 1.00520 0.97860 1.22718 0.95628 0.84764 0.94275 0.91000 1.23567 0.94657 0.97356 1.01374 1.22023 0.86874 0.94143 0.93724 1.46620 1.25428 1.00739 1.62729 1.19298 1.07716 0.87342 1.19714 0.89609 1.25515 1.01472 0.99553 0.99554 1.70001 1.40329 1.17040 1.32976 0.85309 0.78052 0.79140 0.78408 1.20994 1.22864 1.19693 0.90269 0.91186 0.92974 0.88856 0.92156 0.83872 0.82988 0.83390 0.89947 0.91416 0.89576 0.86148 0.75224 0.93752 0.90037 0.90181 0.88684 0.95753 0.95669 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.49 71.98 0.61 -2.29 16 2 C -0.14 -3.44 5.61 30.60 0.17 -3.27 16 3 C 0.07 2.00 2.53 29.85 0.08 2.08 16 4 H 0.13 2.64 5.41 -2.39 -0.01 2.63 16 5 O -0.31 -9.47 9.11 -73.40 -0.67 -10.14 16 6 C 0.11 2.87 5.66 22.51 0.13 3.00 16 7 C -0.22 -4.39 7.39 22.37 0.17 -4.23 16 8 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 9 C -0.16 -2.49 9.70 22.28 0.22 -2.27 16 10 C -0.05 -0.95 5.88 -19.88 -0.12 -1.07 16 11 C -0.11 -1.37 10.01 71.23 0.71 -0.66 16 12 C -0.18 -4.21 9.64 22.37 0.22 -4.00 16 13 C 0.51 17.11 7.18 87.66 0.63 17.74 16 14 O -0.57 -24.36 16.51 15.95 0.26 -24.10 16 15 N -0.70 -22.01 5.46 -463.06 -2.53 -24.54 16 16 C 0.13 4.48 5.55 86.38 0.48 4.96 16 17 C 0.13 4.64 4.35 45.03 0.20 4.83 16 18 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 19 C -0.13 -4.35 7.85 31.25 0.25 -4.10 16 20 C 0.16 7.08 7.29 86.49 0.63 7.71 16 21 N -0.63 -29.52 3.57 -693.20 -2.47 -31.99 16 22 C -0.21 -11.03 10.50 84.03 0.88 -10.15 16 23 H 0.09 4.21 7.84 -2.91 -0.02 4.19 16 24 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 25 N -0.95 -56.63 11.84 21.65 0.26 -56.37 16 26 Si 0.96 44.91 29.56 68.60 2.03 46.94 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 28 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 29 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 30 H 0.08 1.22 6.75 -2.39 -0.02 1.21 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.12 6.56 -2.39 -0.02 1.11 16 33 H 0.09 2.28 7.77 -2.39 -0.02 2.26 16 34 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.14 2.35 4.30 -2.91 -0.01 2.34 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 38 H 0.08 0.84 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 40 H 0.09 0.73 8.08 -2.39 -0.02 0.71 16 41 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.41 11.55 8.18 -92.71 -0.76 10.79 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.08 2.63 8.10 -2.38 -0.02 2.61 16 46 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.02 1.27 7.78 -2.39 -0.02 1.26 16 49 H 0.25 14.32 8.31 -92.72 -0.77 13.55 16 Total: -1.00 -73.42 397.00 3.00 -70.42 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.19 Total: 25.74 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.93 Total: 4.04 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.74 Total: -112.90 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.41 Total: -34.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -73.42 3.00 -70.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733225614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.912 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds