Wall clock time and date at job start Tue Mar 31 2020 16:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47314 * 2 1 4 4 H 1.08994 * 109.47140 * 54.99544 * 3 2 1 5 5 O 1.42905 * 109.46855 * 294.99846 * 3 2 1 6 6 C 1.35905 * 117.00008 * 93.97246 * 5 3 2 7 7 C 1.38747 * 120.05675 * 182.40204 * 6 5 3 8 8 C 1.38125 * 119.94459 * 179.69787 * 7 6 5 9 9 C 1.38291 * 120.05113 * 0.59788 * 8 7 6 10 10 C 1.38242 * 120.11377 * 359.67801 * 9 8 7 11 11 C 1.50701 * 119.97141 * 179.97438 * 10 9 8 12 12 C 1.38166 * 120.05427 * 0.02632 * 10 9 8 13 13 C 1.50694 * 109.47443 * 175.00110 * 3 2 1 14 14 O 1.21291 * 120.00549 * 119.99736 * 13 3 2 15 15 N 1.34780 * 120.00176 * 299.99808 * 13 3 2 16 16 C 1.46498 * 120.00164 * 179.97438 * 15 13 3 17 17 C 1.53003 * 109.46992 * 180.02562 * 16 15 13 18 18 H 1.09009 * 112.73794 * 303.76081 * 17 16 15 19 19 C 1.53491 * 113.47033 * 172.94269 * 17 16 15 20 20 C 1.53749 * 83.25937 * 218.97900 * 19 17 16 21 21 N 1.47068 * 113.46964 * 74.50178 * 17 16 15 22 22 C 1.36929 * 136.05979 * 321.87201 * 21 17 16 23 23 H 1.08001 * 119.99971 * 359.97438 * 22 21 17 24 24 C 1.38809 * 120.00186 * 179.97438 * 22 21 17 25 25 N 1.31621 * 119.99929 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00145 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47551 * 270.00172 * 26 24 22 28 28 H 1.48499 * 109.47048 * 30.00060 * 26 24 22 29 29 H 1.48499 * 109.46908 * 149.99712 * 26 24 22 30 30 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47231 * 299.99765 * 1 2 3 32 32 H 1.08996 * 109.47035 * 60.00325 * 1 2 3 33 33 H 1.09003 * 109.47178 * 239.99720 * 2 1 3 34 34 H 1.09001 * 109.46943 * 120.00118 * 2 1 3 35 35 H 1.08002 * 120.02825 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.97773 * 180.29609 * 8 7 6 37 37 H 1.08002 * 119.94349 * 179.70035 * 9 8 7 38 38 H 1.08999 * 109.47617 * 270.02463 * 11 10 9 39 39 H 1.08997 * 109.47097 * 30.02897 * 11 10 9 40 40 H 1.09002 * 109.46578 * 150.02149 * 11 10 9 41 41 H 1.08001 * 120.02875 * 180.02562 * 12 10 9 42 42 H 0.97002 * 119.99285 * 359.97438 * 15 13 3 43 43 H 1.08994 * 109.47350 * 60.00187 * 16 15 13 44 44 H 1.08995 * 109.47029 * 299.99980 * 16 15 13 45 45 H 1.09000 * 114.20348 * 332.74067 * 19 17 16 46 46 H 1.09002 * 114.20995 * 105.35901 * 19 17 16 47 47 H 1.08995 * 113.46762 * 271.50047 * 20 19 17 48 48 H 1.09000 * 113.55140 * 140.98040 * 20 19 17 49 49 H 0.97000 * 120.00115 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 0.5041 2.7927 -1.2125 7 6 0.0512 3.3972 -2.3764 8 6 -1.1292 4.1145 -2.3664 9 6 -1.8530 4.2407 -1.1949 10 6 -1.4010 3.6441 -0.0326 11 6 -2.1921 3.7842 1.2424 12 6 -0.2240 2.9205 -0.0388 13 6 3.5419 1.4442 0.1238 14 8 4.2217 1.9435 -0.7478 15 7 4.1298 0.8911 1.2031 16 6 5.5898 0.8924 1.3232 17 6 5.9946 0.2079 2.6303 18 1 5.5346 0.6662 3.5059 19 6 7.5096 0.0045 2.7702 20 6 7.0893 -1.3398 3.3867 21 7 5.8539 -1.2555 2.5932 22 6 4.9619 -2.1470 2.0597 23 1 4.1067 -1.7893 1.5056 24 6 5.1568 -3.5107 2.2311 25 7 6.1993 -3.9467 2.9060 26 14 3.9396 -4.7269 1.5040 27 1 2.8688 -5.0075 2.4938 28 1 3.3384 -4.1504 0.2746 29 1 4.6439 -5.9895 1.1653 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.6189 3.3033 -3.2904 36 1 -1.4846 4.5813 -3.2732 37 1 -2.7733 4.8060 -1.1880 38 1 -1.8573 4.6699 1.7823 39 1 -3.2511 3.8827 1.0040 40 1 -2.0400 2.9012 1.8631 41 1 0.1285 2.4542 0.8694 42 1 3.5861 0.4922 1.9004 43 1 5.9535 1.9199 1.3229 44 1 6.0241 0.3530 0.4815 45 1 8.0385 -0.0812 1.8210 46 1 7.9896 0.6880 3.4706 47 1 6.9187 -1.2898 4.4621 48 1 7.7335 -2.1709 3.0998 49 1 6.3353 -4.8996 3.0261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733225616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:59 Heat of formation + Delta-G solvation = 5.771754 kcal Electronic energy + Delta-G solvation = -29008.201447 eV Core-core repulsion = 25130.568479 eV Total energy + Delta-G solvation = -3877.632968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84427 -39.36927 -38.24927 -37.45511 -34.39637 -33.68881 -32.56904 -32.24439 -30.36901 -28.71292 -27.99814 -27.28067 -26.43080 -23.52590 -23.16462 -22.33739 -21.71687 -21.47702 -20.09287 -19.25797 -18.22074 -17.54406 -16.58089 -16.19035 -15.97637 -15.69134 -15.40801 -15.22963 -14.58458 -14.44779 -14.22381 -13.94450 -13.84122 -13.68748 -13.36220 -13.30610 -13.05320 -12.96091 -12.59038 -12.23233 -12.14403 -11.90174 -11.85606 -11.65737 -11.57738 -11.31593 -11.16524 -11.04760 -10.97861 -10.80981 -10.63074 -10.56330 -10.03241 -9.87844 -9.60833 -9.24474 -8.97462 -8.86722 -8.65712 -8.24352 -6.95824 -5.82476 -3.15432 1.14656 1.28733 2.64951 2.83306 3.32975 3.38469 3.40950 3.56444 3.72466 4.37262 4.47374 4.53252 4.65224 4.67332 4.79522 4.95538 5.06589 5.11762 5.14732 5.19700 5.30541 5.33588 5.35279 5.43816 5.47084 5.51488 5.56152 5.57952 5.67226 5.86278 5.86306 5.92222 5.97810 6.04860 6.12511 6.19837 6.26324 6.27647 6.35226 6.39913 6.55216 6.61110 6.65534 6.79822 7.17143 7.28663 7.33923 7.52667 7.77221 7.91757 8.43548 8.96638 9.64447 10.57150 11.34626 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.003066 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.877661 B = 9130.052491 C =10052.408602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.067 3.933 4 H 0.100 0.900 5 O -0.281 6.281 6 C 0.142 3.858 7 C -0.159 4.159 8 C -0.077 4.077 9 C -0.165 4.165 10 C -0.047 4.047 11 C -0.117 4.117 12 C -0.214 4.214 13 C 0.512 3.488 14 O -0.529 6.529 15 N -0.708 5.708 16 C 0.123 3.877 17 C 0.127 3.873 18 H 0.048 0.952 19 C -0.161 4.161 20 C 0.151 3.849 21 N -0.601 5.601 22 C -0.215 4.215 23 H 0.080 0.920 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.280 1.280 29 H -0.290 1.290 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.403 0.597 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.073 0.927 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 14.944 -2.997 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.007 3.993 4 H 0.118 0.882 5 O -0.193 6.193 6 C 0.096 3.904 7 C -0.178 4.178 8 C -0.095 4.095 9 C -0.183 4.183 10 C -0.047 4.047 11 C -0.173 4.173 12 C -0.232 4.232 13 C 0.296 3.704 14 O -0.405 6.405 15 N -0.360 5.360 16 C -0.001 4.001 17 C 0.019 3.981 18 H 0.066 0.934 19 C -0.200 4.200 20 C 0.026 3.974 21 N -0.327 5.327 22 C -0.343 4.343 23 H 0.098 0.902 24 C -0.203 4.203 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.205 1.205 29 H -0.216 1.216 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.149 0.851 42 H 0.238 0.762 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.091 0.909 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.665 14.910 -3.873 20.592 hybrid contribution -1.002 -1.038 0.285 1.471 sum -14.667 13.872 -3.588 20.504 Atomic orbital electron populations 1.21928 0.94583 1.02567 1.02044 1.22046 0.97199 0.93779 1.05039 1.22398 0.93713 0.95305 0.87919 0.88223 1.86232 1.36645 1.62594 1.33794 1.19067 0.85740 0.91371 0.94205 1.20436 0.98269 1.02022 0.97055 1.20922 0.93542 0.96922 0.98115 1.20905 1.01395 1.03377 0.92629 1.19677 0.94205 0.95224 0.95597 1.20828 0.99377 1.02607 0.94519 1.21213 0.97934 1.06185 0.97887 1.20077 0.88828 0.79012 0.82527 1.90710 1.64947 1.45131 1.39671 1.45865 1.08850 1.58917 1.22339 1.21857 0.78386 0.99786 1.00121 1.22424 0.94470 0.87451 0.93735 0.93431 1.23703 0.94934 1.00052 1.01280 1.22083 0.88190 0.93897 0.93262 1.45695 1.28022 0.98726 1.60264 1.18824 1.02812 0.85808 1.26818 0.90220 1.24772 0.98307 0.96654 1.00550 1.69821 1.28660 1.13355 1.44550 0.86212 0.80299 0.81211 0.78650 1.21596 1.20528 1.21573 0.91807 0.92404 0.92217 0.89850 0.89071 0.85187 0.85471 0.86135 0.90953 0.91365 0.91403 0.85063 0.76213 0.92134 0.90891 0.90158 0.92334 0.95724 0.90895 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.45 37.16 0.31 -1.39 16 2 C -0.14 -1.87 5.58 -26.74 -0.15 -2.02 16 3 C 0.07 0.93 2.58 -27.89 -0.07 0.86 16 4 H 0.10 1.14 5.37 -51.93 -0.28 0.86 16 5 O -0.28 -4.32 9.20 -39.35 -0.36 -4.68 16 6 C 0.14 1.85 5.31 -39.22 -0.21 1.64 16 7 C -0.16 -1.87 9.99 -39.43 -0.39 -2.27 16 8 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 9 C -0.16 -1.52 9.70 -39.56 -0.38 -1.90 16 10 C -0.05 -0.45 5.88 -104.65 -0.62 -1.07 16 11 C -0.12 -0.83 10.01 36.01 0.36 -0.47 16 12 C -0.21 -2.37 6.81 -39.43 -0.27 -2.64 16 13 C 0.51 8.79 7.23 -10.99 -0.08 8.71 16 14 O -0.53 -11.14 16.50 -14.36 -0.24 -11.38 16 15 N -0.71 -11.62 5.19 -60.30 -0.31 -11.93 16 16 C 0.12 2.17 5.52 -4.04 -0.02 2.15 16 17 C 0.13 2.35 4.10 -72.41 -0.30 2.06 16 18 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 19 C -0.16 -2.85 8.04 -26.09 -0.21 -3.06 16 20 C 0.15 3.37 7.41 -8.38 -0.06 3.31 16 21 N -0.60 -14.16 3.65 -176.86 -0.65 -14.80 16 22 C -0.22 -5.57 10.55 -15.06 -0.16 -5.73 16 23 H 0.08 1.94 7.50 -52.49 -0.39 1.55 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.92 -26.43 11.50 55.49 0.64 -25.79 16 26 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.55 6.81 -51.93 -0.35 0.19 16 32 H 0.06 0.70 6.26 -51.93 -0.33 0.37 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.09 1.18 7.43 -51.93 -0.39 0.80 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 40 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.13 1.31 4.56 -52.49 -0.24 1.07 16 42 H 0.40 6.09 7.73 -40.82 -0.32 5.78 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 45 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 1.83 7.11 -51.93 -0.37 1.46 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 394.33 15.07 5.94 5.94 Total: -1.00 -32.45 394.33 -10.45 -42.90 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.71 Total: 6.54 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.74 Total: -3.20 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.32 Total: -52.52 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.60 Total: -16.06 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.45 -10.45 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733225616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.672 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds