Wall clock time and date at job start Tue Mar 31 2020 16:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47314 * 2 1 4 4 H 1.08994 * 109.47140 * 54.99544 * 3 2 1 5 5 O 1.42905 * 109.46855 * 294.99846 * 3 2 1 6 6 C 1.35905 * 117.00008 * 93.97246 * 5 3 2 7 7 C 1.38747 * 120.05675 * 182.40204 * 6 5 3 8 8 C 1.38125 * 119.94459 * 179.69787 * 7 6 5 9 9 C 1.38291 * 120.05113 * 0.59788 * 8 7 6 10 10 C 1.38242 * 120.11377 * 359.67801 * 9 8 7 11 11 C 1.50701 * 119.97141 * 179.97438 * 10 9 8 12 12 C 1.38166 * 120.05427 * 0.02632 * 10 9 8 13 13 C 1.50694 * 109.47443 * 175.00110 * 3 2 1 14 14 O 1.21291 * 120.00549 * 119.99736 * 13 3 2 15 15 N 1.34780 * 120.00176 * 299.99808 * 13 3 2 16 16 C 1.46498 * 120.00164 * 179.97438 * 15 13 3 17 17 C 1.53003 * 109.46992 * 180.02562 * 16 15 13 18 18 H 1.09009 * 112.73794 * 303.76081 * 17 16 15 19 19 C 1.53491 * 113.47033 * 172.94269 * 17 16 15 20 20 C 1.53749 * 83.25937 * 218.97900 * 19 17 16 21 21 N 1.47068 * 113.46964 * 74.50178 * 17 16 15 22 22 C 1.36929 * 136.05979 * 321.87201 * 21 17 16 23 23 H 1.08001 * 119.99971 * 359.97438 * 22 21 17 24 24 C 1.38809 * 120.00186 * 179.97438 * 22 21 17 25 25 N 1.31621 * 119.99929 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00145 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47551 * 270.00172 * 26 24 22 28 28 H 1.48499 * 109.47048 * 30.00060 * 26 24 22 29 29 H 1.48499 * 109.46908 * 149.99712 * 26 24 22 30 30 H 1.09003 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47231 * 299.99765 * 1 2 3 32 32 H 1.08996 * 109.47035 * 60.00325 * 1 2 3 33 33 H 1.09003 * 109.47178 * 239.99720 * 2 1 3 34 34 H 1.09001 * 109.46943 * 120.00118 * 2 1 3 35 35 H 1.08002 * 120.02825 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.97773 * 180.29609 * 8 7 6 37 37 H 1.08002 * 119.94349 * 179.70035 * 9 8 7 38 38 H 1.08999 * 109.47617 * 270.02463 * 11 10 9 39 39 H 1.08997 * 109.47097 * 30.02897 * 11 10 9 40 40 H 1.09002 * 109.46578 * 150.02149 * 11 10 9 41 41 H 1.08001 * 120.02875 * 180.02562 * 12 10 9 42 42 H 0.97002 * 119.99285 * 359.97438 * 15 13 3 43 43 H 1.08994 * 109.47350 * 60.00187 * 16 15 13 44 44 H 1.08995 * 109.47029 * 299.99980 * 16 15 13 45 45 H 1.09000 * 114.20348 * 332.74067 * 19 17 16 46 46 H 1.09002 * 114.20995 * 105.35901 * 19 17 16 47 47 H 1.08995 * 113.46762 * 271.50047 * 20 19 17 48 48 H 1.09000 * 113.55140 * 140.98040 * 20 19 17 49 49 H 0.97000 * 120.00115 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8417 5 8 1.6620 2.0813 -1.2211 6 6 0.5041 2.7927 -1.2125 7 6 0.0512 3.3972 -2.3764 8 6 -1.1292 4.1145 -2.3664 9 6 -1.8530 4.2407 -1.1949 10 6 -1.4010 3.6441 -0.0326 11 6 -2.1921 3.7842 1.2424 12 6 -0.2240 2.9205 -0.0388 13 6 3.5419 1.4442 0.1238 14 8 4.2217 1.9435 -0.7478 15 7 4.1298 0.8911 1.2031 16 6 5.5898 0.8924 1.3232 17 6 5.9946 0.2079 2.6303 18 1 5.5346 0.6662 3.5059 19 6 7.5096 0.0045 2.7702 20 6 7.0893 -1.3398 3.3867 21 7 5.8539 -1.2555 2.5932 22 6 4.9619 -2.1470 2.0597 23 1 4.1067 -1.7893 1.5056 24 6 5.1568 -3.5107 2.2311 25 7 6.1993 -3.9467 2.9060 26 14 3.9396 -4.7269 1.5040 27 1 2.8688 -5.0075 2.4938 28 1 3.3384 -4.1504 0.2746 29 1 4.6439 -5.9895 1.1653 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.6189 3.3033 -3.2904 36 1 -1.4846 4.5813 -3.2732 37 1 -2.7733 4.8060 -1.1880 38 1 -1.8573 4.6699 1.7823 39 1 -3.2511 3.8827 1.0040 40 1 -2.0400 2.9012 1.8631 41 1 0.1285 2.4542 0.8694 42 1 3.5861 0.4922 1.9004 43 1 5.9535 1.9199 1.3229 44 1 6.0241 0.3530 0.4815 45 1 8.0385 -0.0812 1.8210 46 1 7.9896 0.6880 3.4706 47 1 6.9187 -1.2898 4.4621 48 1 7.7335 -2.1709 3.0998 49 1 6.3353 -4.8996 3.0261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733225616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:58 Heat of formation + Delta-G solvation = -12.872502 kcal Electronic energy + Delta-G solvation = -29009.009922 eV Core-core repulsion = 25130.568479 eV Total energy + Delta-G solvation = -3878.441444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.88882 -40.63282 -39.73456 -38.51140 -35.76818 -34.79535 -34.19614 -33.31263 -31.22122 -30.10925 -29.75499 -28.14546 -27.48055 -25.38468 -24.05635 -23.76294 -22.67925 -22.51584 -21.40211 -20.87162 -19.16409 -18.98730 -18.18795 -17.22970 -17.13590 -16.92890 -16.65190 -16.56736 -15.96630 -15.78428 -15.56903 -15.21565 -14.81075 -14.77688 -14.66354 -14.42948 -14.07589 -13.86248 -13.65844 -13.43912 -13.34133 -13.08974 -12.96510 -12.95170 -12.76232 -12.65900 -12.57527 -12.36586 -12.35595 -12.15226 -11.94080 -11.81191 -11.61842 -11.49106 -11.19952 -10.85317 -10.72816 -10.10854 -9.73382 -9.10611 -8.88392 -7.86415 -5.18003 0.37842 0.48012 1.38500 1.44163 1.46515 1.53279 1.62855 2.45766 2.54891 2.80709 3.33903 3.39226 3.50264 3.57592 3.65926 3.82288 3.93713 3.98807 4.09150 4.13487 4.23398 4.33104 4.34297 4.41224 4.45943 4.61131 4.63962 4.69028 4.72491 4.78603 4.86360 4.87429 4.93435 4.96117 5.00846 5.06683 5.09067 5.22599 5.30155 5.33386 5.35959 5.37915 5.50999 5.60265 5.66445 5.74523 5.86619 5.98083 6.33261 6.48534 6.94486 7.09419 7.65591 8.64911 9.31343 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.003066 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.877661 B = 9130.052491 C =10052.408602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.075 3.925 4 H 0.128 0.872 5 O -0.309 6.309 6 C 0.114 3.886 7 C -0.181 4.181 8 C -0.076 4.076 9 C -0.164 4.164 10 C -0.051 4.051 11 C -0.116 4.116 12 C -0.219 4.219 13 C 0.509 3.491 14 O -0.573 6.573 15 N -0.701 5.701 16 C 0.130 3.870 17 C 0.135 3.865 18 H 0.074 0.926 19 C -0.136 4.136 20 C 0.143 3.857 21 N -0.629 5.629 22 C -0.205 4.205 23 H 0.091 0.909 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.964 3.036 27 H -0.282 1.282 28 H -0.271 1.271 29 H -0.303 1.303 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.411 0.589 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.025 0.975 48 H 0.035 0.965 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.810 17.132 -2.180 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C 0.015 3.985 4 H 0.145 0.855 5 O -0.222 6.222 6 C 0.070 3.930 7 C -0.200 4.200 8 C -0.094 4.094 9 C -0.182 4.182 10 C -0.051 4.051 11 C -0.172 4.172 12 C -0.237 4.237 13 C 0.295 3.705 14 O -0.453 6.453 15 N -0.353 5.353 16 C 0.005 3.995 17 C 0.029 3.971 18 H 0.091 0.909 19 C -0.174 4.174 20 C 0.017 3.983 21 N -0.355 5.355 22 C -0.333 4.333 23 H 0.108 0.892 24 C -0.263 4.263 25 N -0.604 5.604 26 Si 0.793 3.207 27 H -0.209 1.209 28 H -0.195 1.195 29 H -0.230 1.230 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.141 0.859 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.158 0.842 42 H 0.248 0.752 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.326 17.135 -3.042 23.862 hybrid contribution -0.209 -1.584 0.008 1.598 sum -16.535 15.551 -3.034 22.901 Atomic orbital electron populations 1.21879 0.92686 1.03120 1.02669 1.22021 0.98812 0.92980 1.03930 1.22347 0.91174 0.96104 0.88825 0.85463 1.86187 1.38167 1.63463 1.34421 1.19335 0.85701 0.92448 0.95544 1.20636 0.99447 1.03103 0.96785 1.21242 0.92530 0.96050 0.99540 1.21302 1.02020 1.02731 0.92128 1.20059 0.93765 0.94271 0.96983 1.20892 0.99827 1.03258 0.93269 1.21333 0.98358 1.06609 0.97381 1.20694 0.90279 0.77846 0.81700 1.90683 1.66281 1.47132 1.41160 1.45806 1.08469 1.58521 1.22471 1.21668 0.79147 1.00279 0.98374 1.22566 0.95168 0.84677 0.94703 0.90861 1.23531 0.94752 0.97629 1.01539 1.22094 0.87691 0.95197 0.93338 1.46012 1.28038 1.01086 1.60341 1.19227 1.02645 0.86292 1.25138 0.89169 1.25509 1.00135 0.98541 1.02144 1.70006 1.30687 1.12750 1.46984 0.85286 0.78427 0.78684 0.78312 1.20935 1.19549 1.22971 0.91254 0.90333 0.92996 0.92220 0.88834 0.85865 0.82999 0.83453 0.90103 0.89870 0.90850 0.84197 0.75242 0.90149 0.94000 0.90455 0.88185 0.95760 0.94659 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.45 71.98 0.61 -2.38 16 2 C -0.14 -3.55 5.58 30.59 0.17 -3.38 16 3 C 0.08 2.04 2.58 29.84 0.08 2.12 16 4 H 0.13 2.68 5.37 -2.39 -0.01 2.67 16 5 O -0.31 -9.61 9.20 -73.44 -0.68 -10.29 16 6 C 0.11 2.93 5.31 22.50 0.12 3.05 16 7 C -0.18 -4.21 9.99 22.36 0.22 -3.99 16 8 C -0.08 -1.31 10.04 22.26 0.22 -1.08 16 9 C -0.16 -2.52 9.70 22.28 0.22 -2.30 16 10 C -0.05 -0.84 5.88 -19.88 -0.12 -0.95 16 11 C -0.12 -1.22 10.01 71.24 0.71 -0.51 16 12 C -0.22 -4.43 6.81 22.37 0.15 -4.28 16 13 C 0.51 17.36 7.23 87.65 0.63 18.00 16 14 O -0.57 -24.58 16.50 15.97 0.26 -24.31 16 15 N -0.70 -22.21 5.19 -463.06 -2.41 -24.62 16 16 C 0.13 4.44 5.52 86.38 0.48 4.91 16 17 C 0.14 4.74 4.10 41.78 0.17 4.91 16 18 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 19 C -0.14 -4.54 8.04 31.01 0.25 -4.29 16 20 C 0.14 6.35 7.41 83.26 0.62 6.97 16 21 N -0.63 -29.36 3.65 -713.45 -2.60 -31.96 16 22 C -0.20 -10.57 10.55 84.03 0.89 -9.68 16 23 H 0.09 4.33 7.50 -2.91 -0.02 4.31 16 24 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 25 N -0.95 -56.68 11.50 21.65 0.25 -56.43 16 26 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.26 6.81 -2.39 -0.02 1.24 16 32 H 0.05 1.15 6.26 -2.39 -0.01 1.14 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.30 7.43 -2.39 -0.02 2.28 16 35 H 0.12 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 40 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 41 H 0.14 2.43 4.56 -2.91 -0.01 2.42 16 42 H 0.41 11.69 7.73 -92.71 -0.72 10.97 16 43 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 46 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.03 1.83 7.11 -2.39 -0.02 1.81 16 49 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -73.06 394.33 2.98 -70.08 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.24 Total: 27.13 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.89 Total: 3.67 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.76 Total: -113.00 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.41 Total: -34.60 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.06 2.98 -70.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733225616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.206 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds