Wall clock time and date at job start Tue Mar 31 2020 16:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46811 * 2 1 4 4 H 1.08994 * 109.47254 * 55.00673 * 3 2 1 5 5 O 1.42897 * 109.47604 * 295.00302 * 3 2 1 6 6 C 1.35905 * 117.00086 * 93.97128 * 5 3 2 7 7 C 1.38746 * 120.05300 * 2.68181 * 6 5 3 8 8 C 1.38129 * 119.94384 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05303 * 359.97223 * 8 7 6 10 10 C 1.38243 * 120.11081 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.96923 * 180.02562 * 10 9 8 12 12 C 1.38163 * 120.05773 * 359.76497 * 10 9 8 13 13 C 1.50700 * 109.47197 * 175.00091 * 3 2 1 14 14 O 1.21288 * 120.00209 * 119.99868 * 13 3 2 15 15 N 1.34771 * 120.00134 * 300.28337 * 13 3 2 16 16 C 1.46507 * 120.00343 * 179.72211 * 15 13 3 17 17 C 1.52991 * 109.47297 * 179.97438 * 16 15 13 18 18 H 1.09004 * 112.96574 * 55.33054 * 17 16 15 19 19 C 1.53944 * 113.77193 * 187.01125 * 17 16 15 20 20 C 1.53945 * 86.29280 * 137.90766 * 19 17 16 21 21 N 1.47588 * 113.77153 * 283.65182 * 17 16 15 22 22 C 1.36934 * 134.48900 * 41.07395 * 21 17 16 23 23 H 1.08000 * 120.00120 * 359.97438 * 22 21 17 24 24 C 1.38806 * 120.00097 * 180.02562 * 22 21 17 25 25 N 1.31617 * 119.99789 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00261 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47123 * 90.00102 * 26 24 22 28 28 H 1.48501 * 109.46797 * 209.99840 * 26 24 22 29 29 H 1.48501 * 109.47143 * 329.99678 * 26 24 22 30 30 H 1.09009 * 109.46753 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46961 * 299.99362 * 1 2 3 32 32 H 1.08995 * 109.47487 * 59.99808 * 1 2 3 33 33 H 1.09006 * 109.46760 * 240.00349 * 2 1 3 34 34 H 1.08995 * 109.47430 * 120.00746 * 2 1 3 35 35 H 1.07997 * 120.03169 * 359.97438 * 7 6 5 36 36 H 1.07996 * 119.97042 * 180.02562 * 8 7 6 37 37 H 1.07997 * 119.94300 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47517 * 89.99648 * 11 10 9 39 39 H 1.09006 * 109.47214 * 210.00089 * 11 10 9 40 40 H 1.09007 * 109.47203 * 329.99539 * 11 10 9 41 41 H 1.07998 * 120.02784 * 180.25653 * 12 10 9 42 42 H 0.96999 * 120.00338 * 359.71940 * 15 13 3 43 43 H 1.09001 * 109.46852 * 299.99866 * 16 15 13 44 44 H 1.09003 * 109.46940 * 59.99398 * 16 15 13 45 45 H 1.08997 * 113.74505 * 252.25523 * 19 17 16 46 46 H 1.08999 * 113.74081 * 23.45357 * 19 17 16 47 47 H 1.09000 * 113.76752 * 90.69738 * 20 19 17 48 48 H 1.09004 * 113.76945 * 221.98122 * 20 19 17 49 49 H 0.97010 * 119.99966 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 8 1.6619 2.0814 -1.2209 6 6 0.5039 2.7928 -1.2122 7 6 -0.2244 2.9205 -0.0382 8 6 -1.4012 3.6436 -0.0320 9 6 -1.8534 4.2405 -1.1946 10 6 -1.1296 4.1148 -2.3656 11 6 -1.6250 4.7670 -3.6306 12 6 0.0504 3.3962 -2.3760 13 6 3.5418 1.4444 0.1238 14 8 4.2216 1.9437 -0.7478 15 7 4.1300 0.8862 1.2003 16 6 5.5903 0.8826 1.3178 17 6 5.9953 0.1941 2.6226 18 1 5.5875 -0.8124 2.7168 19 6 7.5009 0.2849 2.9308 20 6 7.0842 0.5678 4.3856 21 7 5.7983 1.0304 3.8226 22 6 4.8183 1.8893 4.2433 23 1 3.9495 2.0617 3.6253 24 6 4.9419 2.5393 5.4635 25 7 6.0009 2.3296 6.2164 26 14 3.6054 3.7115 6.0372 27 1 2.5918 2.9610 6.8212 28 1 4.2067 4.7689 6.8891 29 1 2.9553 4.3365 4.8573 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.1282 2.4542 0.8699 36 1 -1.9682 3.7436 0.8817 37 1 -2.7736 4.8058 -1.1876 38 1 -1.2191 5.7761 -3.7022 39 1 -1.3006 4.1828 -4.4918 40 1 -2.7140 4.8139 -3.6128 41 1 0.6176 3.3018 -3.2902 42 1 3.5864 0.4868 1.8974 43 1 6.0214 0.3444 0.4736 44 1 5.9572 1.9091 1.3198 45 1 8.0329 -0.6576 2.8020 46 1 7.9986 1.1236 2.4441 47 1 6.9960 -0.3286 4.9994 48 1 7.6664 1.3554 4.8641 49 1 6.0872 2.7835 7.0694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733225617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:02 Heat of formation + Delta-G solvation = 2.116669 kcal Electronic energy + Delta-G solvation = -28840.986676 eV Core-core repulsion = 24963.195212 eV Total energy + Delta-G solvation = -3877.791464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.81674 -39.33840 -38.10985 -37.43785 -34.39597 -33.57149 -32.69008 -32.22191 -30.37812 -28.70793 -27.93150 -27.17836 -26.55912 -23.41584 -22.76278 -22.61616 -22.39447 -21.17600 -19.94643 -19.13789 -18.31087 -17.51122 -16.58219 -16.15267 -16.03523 -15.60144 -15.38995 -15.25452 -14.61379 -14.54980 -14.13603 -13.98287 -13.81864 -13.74348 -13.39000 -13.34568 -12.99659 -12.95337 -12.48900 -12.23890 -12.16688 -11.99384 -11.85010 -11.74182 -11.47205 -11.32429 -11.15785 -11.06283 -11.00470 -10.77329 -10.61852 -10.57104 -10.05220 -9.80299 -9.65326 -9.34697 -8.92488 -8.84775 -8.66746 -8.22516 -6.94502 -5.81392 -3.14019 1.17771 1.33570 2.68496 2.78859 3.33229 3.38567 3.41120 3.59876 3.70694 4.37753 4.50810 4.58218 4.65104 4.69230 4.78494 4.89781 5.06376 5.08734 5.10593 5.19976 5.23022 5.35054 5.36792 5.37665 5.47271 5.56208 5.57475 5.65422 5.68097 5.73744 5.83741 5.86706 5.93061 6.02661 6.03646 6.21696 6.26905 6.30449 6.36349 6.43751 6.57620 6.62648 6.65901 6.80142 7.19412 7.29969 7.36300 7.54021 7.76936 7.92868 8.43311 8.98495 9.66020 10.54495 11.35411 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.003198 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.433679 B = 8752.917460 C =10060.496819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.063 3.937 4 H 0.104 0.896 5 O -0.281 6.281 6 C 0.141 3.859 7 C -0.217 4.217 8 C -0.074 4.074 9 C -0.163 4.163 10 C -0.050 4.050 11 C -0.114 4.114 12 C -0.155 4.155 13 C 0.513 3.487 14 O -0.528 6.528 15 N -0.708 5.708 16 C 0.125 3.875 17 C 0.126 3.874 18 H 0.050 0.950 19 C -0.156 4.156 20 C 0.159 3.841 21 N -0.603 5.603 22 C -0.220 4.220 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.918 5.918 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.289 1.289 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.403 0.597 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.364 -2.978 -14.353 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.176 4.176 3 C 0.003 3.997 4 H 0.122 0.878 5 O -0.194 6.194 6 C 0.095 3.905 7 C -0.235 4.235 8 C -0.093 4.093 9 C -0.182 4.182 10 C -0.050 4.050 11 C -0.171 4.171 12 C -0.173 4.173 13 C 0.296 3.704 14 O -0.404 6.404 15 N -0.360 5.360 16 C 0.000 4.000 17 C 0.018 3.982 18 H 0.068 0.932 19 C -0.195 4.195 20 C 0.034 3.966 21 N -0.330 5.330 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.565 5.565 26 Si 0.736 3.264 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.238 0.762 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.853 -2.405 -14.914 19.835 hybrid contribution -1.093 0.395 1.202 1.672 sum -13.947 -2.011 -13.713 19.662 Atomic orbital electron populations 1.21948 0.94495 1.02427 1.02484 1.22001 0.97379 0.94050 1.04172 1.22410 0.93830 0.95170 0.88285 0.87829 1.86199 1.36789 1.62694 1.33671 1.19033 0.85675 0.91589 0.94186 1.21366 0.98307 1.06059 0.97794 1.20914 0.95054 0.95177 0.98108 1.20908 1.01276 1.03399 0.92585 1.19677 0.93562 0.96048 0.95686 1.20801 1.01258 1.00579 0.94414 1.20266 0.97785 1.02186 0.97110 1.20051 0.88790 0.78942 0.82571 1.90710 1.64931 1.44645 1.40156 1.45859 1.08836 1.59168 1.22111 1.21807 0.78317 1.02025 0.97824 1.22507 0.94362 0.93833 0.87466 0.93241 1.23762 0.94749 1.00304 1.00635 1.22233 0.86386 0.96916 0.91084 1.46108 1.22122 1.47040 1.17702 1.18899 0.98503 1.16087 1.01312 0.90488 1.24754 0.98023 1.00457 0.97044 1.69814 1.28102 1.45845 1.12766 0.86225 0.81048 0.80611 0.78525 1.21604 1.21553 1.20693 0.91952 0.92114 0.92070 0.90128 0.89563 0.84996 0.85766 0.86102 0.90901 0.91361 0.91389 0.85233 0.76225 0.91987 0.90892 0.92719 0.90463 0.95490 0.90838 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.45 37.16 0.31 -1.18 16 2 C -0.14 -1.50 5.58 -26.73 -0.15 -1.65 16 3 C 0.06 0.88 2.58 -27.89 -0.07 0.80 16 4 H 0.10 1.35 5.37 -51.93 -0.28 1.07 16 5 O -0.28 -4.33 9.20 -39.35 -0.36 -4.69 16 6 C 0.14 1.91 5.31 -39.22 -0.21 1.70 16 7 C -0.22 -2.62 7.16 -39.43 -0.28 -2.90 16 8 C -0.07 -0.79 10.04 -39.60 -0.40 -1.19 16 9 C -0.16 -1.64 9.70 -39.56 -0.38 -2.03 16 10 C -0.05 -0.52 5.88 -104.65 -0.62 -1.13 16 11 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 12 C -0.15 -1.91 9.64 -39.43 -0.38 -2.29 16 13 C 0.51 8.81 7.23 -10.99 -0.08 8.73 16 14 O -0.53 -11.15 16.50 -14.36 -0.24 -11.38 16 15 N -0.71 -11.62 5.21 -60.29 -0.31 -11.93 16 16 C 0.12 2.21 5.54 -4.04 -0.02 2.18 16 17 C 0.13 2.34 4.33 -66.86 -0.29 2.05 16 18 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 19 C -0.16 -2.77 7.86 -25.79 -0.20 -2.97 16 20 C 0.16 3.57 7.52 -2.85 -0.02 3.55 16 21 N -0.60 -14.33 3.59 -169.74 -0.61 -14.94 16 22 C -0.22 -5.77 10.51 -15.06 -0.16 -5.93 16 23 H 0.08 1.92 7.49 -52.49 -0.39 1.52 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.92 -26.58 11.40 55.49 0.63 -25.95 16 26 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.54 6.81 -51.93 -0.35 0.19 16 32 H 0.06 0.65 6.26 -51.93 -0.33 0.32 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.83 7.42 -51.93 -0.39 0.45 16 35 H 0.13 1.49 4.56 -52.49 -0.24 1.25 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.07 0.41 8.09 -51.92 -0.42 -0.01 16 41 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 42 H 0.40 6.07 7.70 -40.82 -0.31 5.76 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 47 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 1.85 7.18 -51.93 -0.37 1.47 16 49 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 394.30 15.07 5.94 5.94 Total: -1.00 -32.82 394.30 -10.36 -43.18 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.71 Total: 6.18 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.68 Total: -3.01 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.29 Total: -52.82 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.60 Total: -16.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.82 -10.36 -43.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733225617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.296 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds