Wall clock time and date at job start Tue Mar 31 2020 16:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46811 * 2 1 4 4 H 1.08994 * 109.47254 * 55.00673 * 3 2 1 5 5 O 1.42897 * 109.47604 * 295.00302 * 3 2 1 6 6 C 1.35905 * 117.00086 * 93.97128 * 5 3 2 7 7 C 1.38746 * 120.05300 * 2.68181 * 6 5 3 8 8 C 1.38129 * 119.94384 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05303 * 359.97223 * 8 7 6 10 10 C 1.38243 * 120.11081 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.96923 * 180.02562 * 10 9 8 12 12 C 1.38163 * 120.05773 * 359.76497 * 10 9 8 13 13 C 1.50700 * 109.47197 * 175.00091 * 3 2 1 14 14 O 1.21288 * 120.00209 * 119.99868 * 13 3 2 15 15 N 1.34771 * 120.00134 * 300.28337 * 13 3 2 16 16 C 1.46507 * 120.00343 * 179.72211 * 15 13 3 17 17 C 1.52991 * 109.47297 * 179.97438 * 16 15 13 18 18 H 1.09004 * 112.96574 * 55.33054 * 17 16 15 19 19 C 1.53944 * 113.77193 * 187.01125 * 17 16 15 20 20 C 1.53945 * 86.29280 * 137.90766 * 19 17 16 21 21 N 1.47588 * 113.77153 * 283.65182 * 17 16 15 22 22 C 1.36934 * 134.48900 * 41.07395 * 21 17 16 23 23 H 1.08000 * 120.00120 * 359.97438 * 22 21 17 24 24 C 1.38806 * 120.00097 * 180.02562 * 22 21 17 25 25 N 1.31617 * 119.99789 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00261 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47123 * 90.00102 * 26 24 22 28 28 H 1.48501 * 109.46797 * 209.99840 * 26 24 22 29 29 H 1.48501 * 109.47143 * 329.99678 * 26 24 22 30 30 H 1.09009 * 109.46753 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46961 * 299.99362 * 1 2 3 32 32 H 1.08995 * 109.47487 * 59.99808 * 1 2 3 33 33 H 1.09006 * 109.46760 * 240.00349 * 2 1 3 34 34 H 1.08995 * 109.47430 * 120.00746 * 2 1 3 35 35 H 1.07997 * 120.03169 * 359.97438 * 7 6 5 36 36 H 1.07996 * 119.97042 * 180.02562 * 8 7 6 37 37 H 1.07997 * 119.94300 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47517 * 89.99648 * 11 10 9 39 39 H 1.09006 * 109.47214 * 210.00089 * 11 10 9 40 40 H 1.09007 * 109.47203 * 329.99539 * 11 10 9 41 41 H 1.07998 * 120.02784 * 180.25653 * 12 10 9 42 42 H 0.96999 * 120.00338 * 359.71940 * 15 13 3 43 43 H 1.09001 * 109.46852 * 299.99866 * 16 15 13 44 44 H 1.09003 * 109.46940 * 59.99398 * 16 15 13 45 45 H 1.08997 * 113.74505 * 252.25523 * 19 17 16 46 46 H 1.08999 * 113.74081 * 23.45357 * 19 17 16 47 47 H 1.09000 * 113.76752 * 90.69738 * 20 19 17 48 48 H 1.09004 * 113.76945 * 221.98122 * 20 19 17 49 49 H 0.97010 * 119.99966 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 8 1.6619 2.0814 -1.2209 6 6 0.5039 2.7928 -1.2122 7 6 -0.2244 2.9205 -0.0382 8 6 -1.4012 3.6436 -0.0320 9 6 -1.8534 4.2405 -1.1946 10 6 -1.1296 4.1148 -2.3656 11 6 -1.6250 4.7670 -3.6306 12 6 0.0504 3.3962 -2.3760 13 6 3.5418 1.4444 0.1238 14 8 4.2216 1.9437 -0.7478 15 7 4.1300 0.8862 1.2003 16 6 5.5903 0.8826 1.3178 17 6 5.9953 0.1941 2.6226 18 1 5.5875 -0.8124 2.7168 19 6 7.5009 0.2849 2.9308 20 6 7.0842 0.5678 4.3856 21 7 5.7983 1.0304 3.8226 22 6 4.8183 1.8893 4.2433 23 1 3.9495 2.0617 3.6253 24 6 4.9419 2.5393 5.4635 25 7 6.0009 2.3296 6.2164 26 14 3.6054 3.7115 6.0372 27 1 2.5918 2.9610 6.8212 28 1 4.2067 4.7689 6.8891 29 1 2.9553 4.3365 4.8573 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.1282 2.4542 0.8699 36 1 -1.9682 3.7436 0.8817 37 1 -2.7736 4.8058 -1.1876 38 1 -1.2191 5.7761 -3.7022 39 1 -1.3006 4.1828 -4.4918 40 1 -2.7140 4.8139 -3.6128 41 1 0.6176 3.3018 -3.2902 42 1 3.5864 0.4868 1.8974 43 1 6.0214 0.3444 0.4736 44 1 5.9572 1.9091 1.3198 45 1 8.0329 -0.6576 2.8020 46 1 7.9986 1.1236 2.4441 47 1 6.9960 -0.3286 4.9994 48 1 7.6664 1.3554 4.8641 49 1 6.0872 2.7835 7.0694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733225617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:01 Heat of formation + Delta-G solvation = -16.703428 kcal Electronic energy + Delta-G solvation = -28841.802777 eV Core-core repulsion = 24963.195212 eV Total energy + Delta-G solvation = -3878.607565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87697 -40.59228 -39.59526 -38.55426 -35.76245 -34.65619 -34.15643 -33.45458 -31.25998 -30.10605 -29.72630 -27.93932 -27.73605 -25.29254 -23.90723 -23.58228 -23.49346 -22.35190 -21.19774 -20.72457 -19.31984 -18.90902 -18.18345 -17.26144 -17.13709 -16.92828 -16.66059 -16.54117 -16.12319 -15.62214 -15.54547 -15.29583 -14.95314 -14.80358 -14.60439 -14.43958 -14.16165 -13.79909 -13.65102 -13.33958 -13.28948 -13.06578 -12.95692 -12.93275 -12.75633 -12.68882 -12.56195 -12.51981 -12.33776 -12.10847 -11.90223 -11.84779 -11.53215 -11.48431 -11.34112 -10.84131 -10.76944 -10.11694 -9.75926 -9.13013 -8.88203 -7.86554 -5.18006 0.33973 0.46375 1.43063 1.43266 1.45337 1.52242 1.57204 2.45066 2.54118 2.77500 3.30451 3.37987 3.47980 3.58462 3.69770 3.88462 3.92898 3.99184 4.08975 4.14663 4.21698 4.34574 4.36028 4.37926 4.43696 4.54318 4.61176 4.69577 4.71050 4.82911 4.85564 4.87078 4.95512 4.98051 5.04863 5.06627 5.09426 5.22972 5.26734 5.33220 5.35335 5.36788 5.48242 5.61387 5.63461 5.75099 5.82699 5.98043 6.31452 6.47564 6.95120 7.09414 7.65965 8.60819 9.30612 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.003198 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.433679 B = 8752.917460 C =10060.496819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.068 3.932 4 H 0.113 0.887 5 O -0.307 6.307 6 C 0.117 3.883 7 C -0.226 4.226 8 C -0.078 4.078 9 C -0.163 4.163 10 C -0.052 4.052 11 C -0.113 4.113 12 C -0.175 4.175 13 C 0.510 3.490 14 O -0.574 6.574 15 N -0.701 5.701 16 C 0.132 3.868 17 C 0.134 3.866 18 H 0.077 0.923 19 C -0.132 4.132 20 C 0.150 3.850 21 N -0.630 5.630 22 C -0.212 4.212 23 H 0.087 0.913 24 C -0.071 4.071 25 N -0.955 5.955 26 Si 0.964 3.036 27 H -0.282 1.282 28 H -0.301 1.301 29 H -0.273 1.273 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.411 0.589 43 H 0.082 0.918 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.037 0.963 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.696 -3.704 -15.285 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.008 3.992 4 H 0.130 0.870 5 O -0.220 6.220 6 C 0.072 3.928 7 C -0.244 4.244 8 C -0.096 4.096 9 C -0.181 4.181 10 C -0.052 4.052 11 C -0.169 4.169 12 C -0.194 4.194 13 C 0.296 3.704 14 O -0.453 6.453 15 N -0.353 5.353 16 C 0.007 3.993 17 C 0.028 3.972 18 H 0.094 0.906 19 C -0.171 4.171 20 C 0.025 3.975 21 N -0.357 5.357 22 C -0.341 4.341 23 H 0.105 0.895 24 C -0.264 4.264 25 N -0.605 5.605 26 Si 0.793 3.207 27 H -0.209 1.209 28 H -0.229 1.229 29 H -0.198 1.198 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.248 0.752 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.215 -3.166 -15.868 22.210 hybrid contribution -0.375 0.619 1.403 1.578 sum -15.590 -2.547 -14.465 21.419 Atomic orbital electron populations 1.21903 0.93244 1.03396 1.02226 1.22001 0.98355 0.91871 1.04662 1.22444 0.91227 0.97131 0.88403 0.86997 1.86149 1.38033 1.63502 1.34317 1.19281 0.85672 0.92534 0.95324 1.21481 0.98888 1.06684 0.97380 1.21257 0.94586 0.94416 0.99354 1.21291 1.01948 1.02831 0.92072 1.20046 0.92698 0.95223 0.97212 1.20867 1.02412 1.00581 0.93075 1.20483 0.98874 1.03125 0.96888 1.20675 0.90235 0.77725 0.81783 1.90682 1.66280 1.46591 1.41731 1.45797 1.08456 1.58841 1.22166 1.21616 0.79228 1.00306 0.98122 1.22676 0.94869 0.93907 0.85703 0.90601 1.23566 0.94752 1.02249 0.96491 1.22203 0.86122 0.95593 0.93631 1.46461 1.21998 1.47660 1.19590 1.19301 0.98721 1.15302 1.00737 0.89539 1.25503 1.00111 1.02836 0.97913 1.70000 1.30043 1.47490 1.12920 0.85284 0.78838 0.78541 0.77991 1.20929 1.22850 1.19767 0.90292 0.91380 0.93331 0.90641 0.87960 0.84574 0.83509 0.83428 0.90246 0.90952 0.89507 0.85622 0.75227 0.89953 0.94072 0.88635 0.90560 0.95748 0.94465 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.45 71.98 0.61 -1.99 16 2 C -0.13 -2.65 5.58 30.59 0.17 -2.48 16 3 C 0.07 1.84 2.58 29.85 0.08 1.92 16 4 H 0.11 2.82 5.37 -2.39 -0.01 2.80 16 5 O -0.31 -9.57 9.20 -73.45 -0.68 -10.25 16 6 C 0.12 3.16 5.31 22.51 0.12 3.28 16 7 C -0.23 -5.21 7.16 22.37 0.16 -5.05 16 8 C -0.08 -1.49 10.04 22.26 0.22 -1.27 16 9 C -0.16 -2.88 9.70 22.28 0.22 -2.66 16 10 C -0.05 -1.00 5.88 -19.88 -0.12 -1.12 16 11 C -0.11 -1.45 10.01 71.24 0.71 -0.73 16 12 C -0.18 -4.31 9.64 22.37 0.22 -4.09 16 13 C 0.51 17.37 7.23 87.66 0.63 18.01 16 14 O -0.57 -24.57 16.50 15.98 0.26 -24.30 16 15 N -0.70 -22.12 5.21 -463.05 -2.41 -24.53 16 16 C 0.13 4.50 5.54 86.37 0.48 4.98 16 17 C 0.13 4.71 4.33 45.09 0.20 4.91 16 18 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 19 C -0.13 -4.43 7.86 31.25 0.25 -4.19 16 20 C 0.15 6.73 7.52 86.44 0.65 7.38 16 21 N -0.63 -29.62 3.59 -690.94 -2.48 -32.10 16 22 C -0.21 -11.05 10.51 84.03 0.88 -10.16 16 23 H 0.09 4.21 7.49 -2.91 -0.02 4.19 16 24 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 25 N -0.95 -56.78 11.40 21.65 0.25 -56.53 16 26 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 1.07 6.81 -2.39 -0.02 1.05 16 32 H 0.05 0.97 6.26 -2.39 -0.01 0.96 16 33 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.10 1.72 7.42 -2.39 -0.02 1.70 16 35 H 0.14 2.89 4.56 -2.91 -0.01 2.87 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 40 H 0.09 0.79 8.09 -2.38 -0.02 0.77 16 41 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.41 11.59 7.70 -92.71 -0.71 10.87 16 43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.08 2.59 8.10 -2.39 -0.02 2.58 16 47 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.04 1.93 7.18 -2.38 -0.02 1.91 16 49 H 0.24 14.32 8.31 -92.70 -0.77 13.55 16 Total: -1.00 -73.35 394.30 3.15 -70.20 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.24 Total: 27.39 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.94 Total: 3.24 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.64 Total: -113.16 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.41 Total: -34.55 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.35 3.15 -70.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733225617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.496 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds