Wall clock time and date at job start Tue Mar 31 2020 16:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47176 * 72.20820 * 3 2 1 5 5 C 1.34775 * 120.00042 * 269.99477 * 4 3 2 6 6 O 1.21283 * 120.00266 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.99729 * 0.02562 * 5 4 3 8 8 H 1.09005 * 115.56967 * 34.22493 * 7 5 4 9 9 C 1.53182 * 117.52028 * 248.36857 * 7 5 4 10 10 C 1.52107 * 117.52149 * 179.97438 * 7 5 4 11 11 C 1.53708 * 121.75231 * 218.50508 * 10 7 5 12 12 C 1.54692 * 103.69409 * 143.51786 * 11 10 7 13 13 O 1.44500 * 104.87331 * 23.83736 * 12 11 10 14 14 C 1.44637 * 105.45862 * 320.02451 * 13 12 11 15 15 C 1.46501 * 120.00232 * 89.99161 * 4 3 2 16 16 C 1.53038 * 109.46340 * 300.00400 * 15 4 3 17 17 C 1.53189 * 109.31147 * 181.38316 * 16 15 4 18 18 N 1.46927 * 108.77769 * 305.36483 * 17 16 15 19 19 C 1.36942 * 120.62895 * 233.59042 * 18 17 16 20 20 H 1.07997 * 119.99967 * 27.80579 * 19 18 17 21 21 C 1.38809 * 119.99503 * 208.08526 * 19 18 17 22 22 N 1.31615 * 120.00126 * 17.09239 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 197.08760 * 21 19 18 24 24 H 1.48498 * 109.46899 * 60.00358 * 23 21 19 25 25 H 1.48506 * 109.47112 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47385 * 300.00436 * 23 21 19 27 27 C 1.46925 * 118.73862 * 53.86077 * 18 17 16 28 28 C 1.53043 * 109.45767 * 60.07422 * 15 4 3 29 29 H 4.40641 * 5.51308 * 180.02562 * 4 1 2 30 30 H 1.08988 * 109.47529 * 312.20129 * 3 2 1 31 31 H 1.09006 * 109.46795 * 192.20088 * 3 2 1 32 32 H 1.09007 * 117.52371 * 359.97438 * 9 7 5 33 33 H 1.09004 * 117.52511 * 145.15446 * 9 7 5 34 34 H 1.09003 * 110.58263 * 262.07200 * 11 10 7 35 35 H 1.09006 * 110.57819 * 24.81316 * 11 10 7 36 36 H 1.09004 * 110.35940 * 142.68285 * 12 11 10 37 37 H 1.08996 * 110.36434 * 264.98586 * 12 11 10 38 38 H 1.09003 * 110.41941 * 280.89057 * 14 13 12 39 39 H 1.09000 * 110.42087 * 158.42977 * 14 13 12 40 40 H 1.08999 * 109.46223 * 180.02562 * 15 4 3 41 41 H 1.09003 * 109.49591 * 61.43289 * 16 15 4 42 42 H 1.08999 * 109.52095 * 301.34919 * 16 15 4 43 43 H 1.09002 * 109.58776 * 185.57680 * 17 16 15 44 44 H 1.09004 * 109.58947 * 65.15686 * 17 16 15 45 45 H 0.97009 * 119.99846 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58548 * 65.93036 * 27 18 17 47 47 H 1.08998 * 109.58644 * 186.35572 * 27 18 17 48 48 H 1.09000 * 109.49553 * 298.56182 * 28 15 4 49 49 H 1.08999 * 109.50205 * 58.66044 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4212 -1.3151 5 6 3.3599 -1.7265 -1.5634 6 8 3.7648 -2.0757 -2.6520 7 6 3.1087 -2.7523 -0.4883 8 1 2.2738 -2.5392 0.1793 9 6 4.3260 -3.4682 0.1052 10 6 3.3812 -4.2093 -0.8296 11 6 2.4713 -5.3416 -0.3270 12 6 2.4490 -6.3437 -1.5053 13 8 3.6665 -6.0818 -2.2381 14 6 3.8139 -4.6429 -2.2390 15 6 3.3781 0.5759 -2.3605 16 6 2.0763 1.3185 -2.6702 17 6 2.3270 2.3360 -3.7875 18 7 3.4401 3.2092 -3.3910 19 6 3.2956 4.5710 -3.3991 20 1 2.3207 5.0114 -3.2509 21 6 4.4012 5.3850 -3.6036 22 7 5.5038 4.8809 -4.1160 23 14 4.3243 7.1958 -3.1515 24 1 4.0421 7.3320 -1.6999 25 1 5.6247 7.8402 -3.4660 26 1 3.2447 7.8549 -3.9296 27 6 4.7130 2.5939 -2.9914 28 6 4.4338 1.5732 -1.8777 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.6894 0.7612 31 1 3.0089 1.0053 0.2172 32 1 5.3081 -3.1974 -0.2825 33 1 4.2921 -3.7260 1.1637 34 1 2.8943 -5.8065 0.5635 35 1 1.4690 -4.9653 -0.1220 36 1 2.4440 -7.3678 -1.1320 37 1 1.5797 -6.1657 -2.1382 38 1 3.1644 -4.1946 -2.9909 39 1 4.8529 -4.3672 -2.4195 40 1 3.7352 0.0775 -3.2617 41 1 1.7320 1.8377 -1.7758 42 1 1.3176 0.6049 -2.9915 43 1 1.4301 2.9354 -3.9439 44 1 2.5837 1.8120 -4.7082 45 1 6.2766 5.4497 -4.2586 46 1 5.1604 2.0904 -3.8484 47 1 5.3909 3.3634 -2.6222 48 1 4.0673 2.0901 -0.9908 49 1 5.3534 1.0407 -1.6351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733373735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:46 Heat of formation + Delta-G solvation = 31.874334 kcal Electronic energy + Delta-G solvation = -29505.460685 eV Core-core repulsion = 25628.959610 eV Total energy + Delta-G solvation = -3876.501075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.84083 -39.35453 -37.55548 -35.88304 -35.68696 -33.11658 -32.18183 -30.64983 -30.17556 -29.64553 -27.55979 -27.12340 -25.55460 -24.01216 -22.92015 -22.22552 -21.76985 -20.14198 -19.48373 -19.07392 -18.02086 -17.22853 -16.80474 -16.36441 -16.20791 -15.53656 -15.35594 -15.17876 -14.73923 -14.38560 -13.90418 -13.81521 -13.64822 -13.43757 -13.30187 -13.19447 -12.92429 -12.69304 -12.53905 -12.35560 -12.33106 -11.67644 -11.55428 -11.25670 -11.18477 -10.99322 -10.73872 -10.73684 -10.57541 -10.44723 -10.25772 -10.21627 -10.14538 -10.08313 -9.96823 -9.76148 -9.67064 -9.38636 -8.64764 -8.41833 -6.70783 -5.80757 -3.23135 2.32677 2.52637 2.76393 3.20551 3.36991 3.42948 3.43805 3.48551 3.86381 4.06961 4.28166 4.42035 4.44071 4.47936 4.62494 4.76052 4.89030 5.09009 5.13267 5.22328 5.28046 5.35933 5.36912 5.43272 5.46736 5.49069 5.55497 5.58331 5.63224 5.67843 5.74927 5.85113 5.85592 5.95109 6.05645 6.18609 6.29715 6.47717 6.53146 6.59310 6.64612 6.75344 6.84396 6.94759 7.30732 7.43887 7.53957 7.63060 7.77508 8.20270 8.42818 9.19070 9.82165 10.39086 11.27892 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.002824 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.302901 B = 9913.315761 C =10459.051380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.201 4.201 3 C 0.215 3.785 4 N -0.596 5.596 5 C 0.544 3.456 6 O -0.534 6.534 7 C -0.174 4.174 8 H 0.125 0.875 9 C -0.131 4.131 10 C -0.131 4.131 11 C -0.120 4.120 12 C 0.047 3.953 13 O -0.380 6.380 14 C 0.092 3.908 15 C 0.145 3.855 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.215 0.785 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.019 0.981 45 H 0.255 0.745 46 H 0.021 0.979 47 H 0.092 0.908 48 H 0.057 0.943 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.831 -18.265 12.359 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C 0.092 3.908 4 N -0.327 5.327 5 C 0.332 3.668 6 O -0.411 6.411 7 C -0.195 4.195 8 H 0.143 0.857 9 C -0.168 4.168 10 C -0.132 4.132 11 C -0.157 4.157 12 C -0.030 4.030 13 O -0.299 6.299 14 C 0.016 3.984 15 C 0.044 3.956 16 C -0.175 4.175 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.048 3.952 28 C -0.186 4.186 29 H 0.232 0.768 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.110 0.890 48 H 0.076 0.924 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.276 -18.491 11.595 22.710 hybrid contribution -0.583 1.314 0.511 1.526 sum -6.859 -17.177 12.106 22.106 Atomic orbital electron populations 1.24900 0.95880 1.00839 0.99158 1.23578 0.94921 1.00570 1.01194 1.18421 0.83670 1.03146 0.85566 1.48194 1.64413 1.06450 1.13613 1.19624 0.76960 0.82430 0.87772 1.90681 1.46005 1.79623 1.24827 1.22309 1.02889 0.92558 1.01755 0.85710 1.22995 0.94151 1.00567 0.99124 1.22148 1.01435 0.91307 0.98291 1.22427 0.99447 0.94632 0.99219 1.23376 0.88423 0.99280 0.91909 1.89169 1.42047 1.22870 1.75778 1.22869 1.02906 0.79462 0.93186 1.21269 0.96377 0.87780 0.90195 1.22354 0.95706 0.98283 1.01128 1.20873 0.92344 0.91550 0.93176 1.44101 1.09197 1.02001 1.76140 1.19141 0.94746 0.81210 1.43238 0.91701 1.25047 0.97477 0.97924 0.99146 1.70020 1.03986 1.35352 1.45309 0.86370 0.76812 0.85088 0.78486 1.21055 1.21621 1.20892 1.20849 0.88707 0.93377 0.92249 1.22662 0.96802 0.97599 1.01573 0.76778 0.88305 0.87346 0.87623 0.87436 0.90077 0.90162 0.89155 0.92264 0.90292 0.88582 0.88455 0.92008 0.93196 0.92547 0.96280 0.93513 0.96076 0.89020 0.92400 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 19.25 29.55 0.57 -1.48 16 2 C -0.20 -2.40 11.73 -37.12 -0.44 -2.84 16 3 C 0.21 2.46 5.01 -6.83 -0.03 2.43 16 4 N -0.60 -8.48 2.37 -169.38 -0.40 -8.88 16 5 C 0.54 7.80 7.45 -10.99 -0.08 7.72 16 6 O -0.53 -9.36 13.16 5.56 0.07 -9.29 16 7 C -0.17 -1.83 4.69 -92.13 -0.43 -2.26 16 8 H 0.13 1.14 6.97 -51.93 -0.36 0.77 16 9 C -0.13 -1.17 10.00 -27.06 -0.27 -1.44 16 10 C -0.13 -1.35 2.50 -154.66 -0.39 -1.74 16 11 C -0.12 -0.96 6.88 -25.47 -0.18 -1.14 16 12 C 0.05 0.42 7.65 38.05 0.29 0.72 16 13 O -0.38 -4.82 11.65 -35.23 -0.41 -5.23 16 14 C 0.09 1.17 5.65 37.51 0.21 1.38 16 15 C 0.15 2.52 2.48 -67.89 -0.17 2.35 16 16 C -0.13 -2.40 4.73 -26.61 -0.13 -2.52 16 17 C 0.15 3.13 6.51 -3.71 -0.02 3.10 16 18 N -0.59 -14.64 2.99 -172.06 -0.51 -15.16 16 19 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 22 N -0.90 -25.97 11.18 55.49 0.62 -25.35 16 23 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.17 4.10 5.33 -3.49 -0.02 4.08 16 28 C -0.15 -2.71 5.33 -26.39 -0.14 -2.85 16 29 H 0.22 1.62 7.80 -54.10 -0.42 1.20 16 30 H 0.10 0.85 6.64 -51.94 -0.34 0.51 16 31 H 0.11 1.28 6.46 -51.93 -0.34 0.94 16 32 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.14 7.05 -51.93 -0.37 0.77 16 39 H 0.10 1.28 8.04 -51.93 -0.42 0.87 16 40 H 0.10 1.92 6.90 -51.93 -0.36 1.57 16 41 H 0.06 1.11 7.02 -51.93 -0.36 0.75 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 48 H 0.06 1.04 6.73 -51.93 -0.35 0.70 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -31.68 387.15 -9.10 -40.78 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.82 Total: 2.39 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.45 Total: -1.52 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.30 Total: -49.38 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.34 Total: -14.51 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.68 -9.10 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.655 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds