Wall clock time and date at job start Tue Mar 31 2020 16:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47176 * 72.20820 * 3 2 1 5 5 C 1.34775 * 120.00042 * 269.99477 * 4 3 2 6 6 O 1.21283 * 120.00266 * 180.02562 * 5 4 3 7 7 C 1.50699 * 119.99729 * 0.02562 * 5 4 3 8 8 H 1.09005 * 115.56967 * 34.22493 * 7 5 4 9 9 C 1.53182 * 117.52028 * 248.36857 * 7 5 4 10 10 C 1.52107 * 117.52149 * 179.97438 * 7 5 4 11 11 C 1.53708 * 121.75231 * 218.50508 * 10 7 5 12 12 C 1.54692 * 103.69409 * 143.51786 * 11 10 7 13 13 O 1.44500 * 104.87331 * 23.83736 * 12 11 10 14 14 C 1.44637 * 105.45862 * 320.02451 * 13 12 11 15 15 C 1.46501 * 120.00232 * 89.99161 * 4 3 2 16 16 C 1.53038 * 109.46340 * 300.00400 * 15 4 3 17 17 C 1.53189 * 109.31147 * 181.38316 * 16 15 4 18 18 N 1.46927 * 108.77769 * 305.36483 * 17 16 15 19 19 C 1.36942 * 120.62895 * 233.59042 * 18 17 16 20 20 H 1.07997 * 119.99967 * 27.80579 * 19 18 17 21 21 C 1.38809 * 119.99503 * 208.08526 * 19 18 17 22 22 N 1.31615 * 120.00126 * 17.09239 * 21 19 18 23 23 Si 1.86801 * 119.99825 * 197.08760 * 21 19 18 24 24 H 1.48498 * 109.46899 * 60.00358 * 23 21 19 25 25 H 1.48506 * 109.47112 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47385 * 300.00436 * 23 21 19 27 27 C 1.46925 * 118.73862 * 53.86077 * 18 17 16 28 28 C 1.53043 * 109.45767 * 60.07422 * 15 4 3 29 29 H 4.40641 * 5.51308 * 180.02562 * 4 1 2 30 30 H 1.08988 * 109.47529 * 312.20129 * 3 2 1 31 31 H 1.09006 * 109.46795 * 192.20088 * 3 2 1 32 32 H 1.09007 * 117.52371 * 359.97438 * 9 7 5 33 33 H 1.09004 * 117.52511 * 145.15446 * 9 7 5 34 34 H 1.09003 * 110.58263 * 262.07200 * 11 10 7 35 35 H 1.09006 * 110.57819 * 24.81316 * 11 10 7 36 36 H 1.09004 * 110.35940 * 142.68285 * 12 11 10 37 37 H 1.08996 * 110.36434 * 264.98586 * 12 11 10 38 38 H 1.09003 * 110.41941 * 280.89057 * 14 13 12 39 39 H 1.09000 * 110.42087 * 158.42977 * 14 13 12 40 40 H 1.08999 * 109.46223 * 180.02562 * 15 4 3 41 41 H 1.09003 * 109.49591 * 61.43289 * 16 15 4 42 42 H 1.08999 * 109.52095 * 301.34919 * 16 15 4 43 43 H 1.09002 * 109.58776 * 185.57680 * 17 16 15 44 44 H 1.09004 * 109.58947 * 65.15686 * 17 16 15 45 45 H 0.97009 * 119.99846 * 180.02562 * 22 21 19 46 46 H 1.09000 * 109.58548 * 65.93036 * 27 18 17 47 47 H 1.08998 * 109.58644 * 186.35572 * 27 18 17 48 48 H 1.09000 * 109.49553 * 298.56182 * 28 15 4 49 49 H 1.08999 * 109.50205 * 58.66044 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.4212 -1.3151 5 6 3.3599 -1.7265 -1.5634 6 8 3.7648 -2.0757 -2.6520 7 6 3.1087 -2.7523 -0.4883 8 1 2.2738 -2.5392 0.1793 9 6 4.3260 -3.4682 0.1052 10 6 3.3812 -4.2093 -0.8296 11 6 2.4713 -5.3416 -0.3270 12 6 2.4490 -6.3437 -1.5053 13 8 3.6665 -6.0818 -2.2381 14 6 3.8139 -4.6429 -2.2390 15 6 3.3781 0.5759 -2.3605 16 6 2.0763 1.3185 -2.6702 17 6 2.3270 2.3360 -3.7875 18 7 3.4401 3.2092 -3.3910 19 6 3.2956 4.5710 -3.3991 20 1 2.3207 5.0114 -3.2509 21 6 4.4012 5.3850 -3.6036 22 7 5.5038 4.8809 -4.1160 23 14 4.3243 7.1958 -3.1515 24 1 4.0421 7.3320 -1.6999 25 1 5.6247 7.8402 -3.4660 26 1 3.2447 7.8549 -3.9296 27 6 4.7130 2.5939 -2.9914 28 6 4.4338 1.5732 -1.8777 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.6894 0.7612 31 1 3.0089 1.0053 0.2172 32 1 5.3081 -3.1974 -0.2825 33 1 4.2921 -3.7260 1.1637 34 1 2.8943 -5.8065 0.5635 35 1 1.4690 -4.9653 -0.1220 36 1 2.4440 -7.3678 -1.1320 37 1 1.5797 -6.1657 -2.1382 38 1 3.1644 -4.1946 -2.9909 39 1 4.8529 -4.3672 -2.4195 40 1 3.7352 0.0775 -3.2617 41 1 1.7320 1.8377 -1.7758 42 1 1.3176 0.6049 -2.9915 43 1 1.4301 2.9354 -3.9439 44 1 2.5837 1.8120 -4.7082 45 1 6.2766 5.4497 -4.2586 46 1 5.1604 2.0904 -3.8484 47 1 5.3909 3.3634 -2.6222 48 1 4.0673 2.0901 -0.9908 49 1 5.3534 1.0407 -1.6351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733373735.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:46 Heat of formation + Delta-G solvation = 13.723439 kcal Electronic energy + Delta-G solvation = -29506.247767 eV Core-core repulsion = 25628.959610 eV Total energy + Delta-G solvation = -3877.288157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.84590 -40.40977 -38.98387 -37.07799 -36.77955 -34.62228 -33.49569 -31.92204 -31.49936 -31.19304 -28.48063 -28.17881 -27.14117 -25.34366 -23.92812 -23.65582 -23.25635 -21.14289 -20.81873 -20.21517 -19.08266 -18.56659 -18.23988 -17.47938 -17.06662 -16.86081 -16.41913 -16.34823 -16.07351 -15.64747 -15.41632 -15.15894 -14.88211 -14.72319 -14.42987 -14.34367 -14.23581 -14.02807 -13.94538 -13.36839 -13.23951 -13.13843 -13.02151 -12.67951 -12.57451 -12.37864 -12.19217 -12.07901 -11.98959 -11.95705 -11.59700 -11.50879 -11.40679 -11.32544 -11.16464 -10.90014 -10.85382 -10.57726 -10.49420 -9.82687 -8.73874 -7.89027 -5.35196 1.32077 1.47662 1.49272 1.52633 1.56964 1.93946 2.27041 2.50786 2.64604 3.04589 3.25087 3.27082 3.50830 3.59137 3.63506 3.68936 3.78493 3.89463 3.95374 4.06940 4.21523 4.24369 4.30078 4.42352 4.43596 4.49943 4.53255 4.59951 4.69078 4.76089 4.78064 4.80790 4.83420 4.88796 4.91546 4.99555 5.00392 5.07024 5.09180 5.09717 5.13541 5.25612 5.42697 5.51667 5.61749 5.67972 5.81758 6.33895 6.36667 6.72349 7.09191 7.12085 7.81569 8.34847 9.17837 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.002824 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.302901 B = 9913.315761 C =10459.051380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.234 4.234 3 C 0.212 3.788 4 N -0.594 5.594 5 C 0.537 3.463 6 O -0.576 6.576 7 C -0.171 4.171 8 H 0.150 0.850 9 C -0.113 4.113 10 C -0.140 4.140 11 C -0.109 4.109 12 C 0.036 3.964 13 O -0.403 6.403 14 C 0.093 3.907 15 C 0.156 3.844 16 C -0.114 4.114 17 C 0.144 3.856 18 N -0.607 5.607 19 C -0.265 4.265 20 H 0.069 0.931 21 C -0.050 4.050 22 N -0.936 5.936 23 Si 0.970 3.030 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.182 3.818 28 C -0.128 4.128 29 H 0.242 0.758 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.145 0.855 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.006 0.994 45 H 0.251 0.749 46 H -0.010 1.010 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -19.209 15.800 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.235 4.235 3 C 0.091 3.909 4 N -0.324 5.324 5 C 0.327 3.673 6 O -0.456 6.456 7 C -0.192 4.192 8 H 0.168 0.832 9 C -0.150 4.150 10 C -0.141 4.141 11 C -0.146 4.146 12 C -0.040 4.040 13 O -0.322 6.322 14 C 0.016 3.984 15 C 0.053 3.947 16 C -0.154 4.154 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.395 4.395 20 H 0.087 0.913 21 C -0.245 4.245 22 N -0.582 5.582 23 Si 0.797 3.203 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.055 3.945 28 C -0.167 4.167 29 H 0.258 0.742 30 H 0.151 0.849 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.163 0.837 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.024 0.976 45 H 0.060 0.940 46 H 0.008 0.992 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.251 -19.456 15.074 25.958 hybrid contribution -0.027 1.541 -0.663 1.678 sum -8.278 -17.915 14.411 24.437 Atomic orbital electron populations 1.25656 0.96733 0.99550 0.97611 1.23744 0.95358 1.01826 1.02561 1.18650 0.83914 1.03881 0.84435 1.48087 1.64473 1.05867 1.13968 1.20368 0.75870 0.82864 0.88196 1.90679 1.47740 1.80249 1.26896 1.22262 1.04741 0.91199 1.00995 0.83211 1.23153 0.92822 0.98340 1.00660 1.22200 1.02805 0.91872 0.97187 1.22444 0.99874 0.93157 0.99170 1.23668 0.86993 1.01089 0.92249 1.89138 1.43871 1.22499 1.76718 1.22648 1.01255 0.79844 0.94639 1.20806 0.95586 0.87965 0.90378 1.22088 0.96094 0.97384 0.99793 1.20985 0.91340 0.91870 0.94017 1.44342 1.10103 1.01975 1.76651 1.19490 0.94963 0.82470 1.42531 0.91325 1.25834 0.97200 1.02079 0.99402 1.70191 1.04570 1.36680 1.46780 0.85314 0.76461 0.80002 0.78493 1.20025 1.22142 1.20223 1.20621 0.87934 0.93355 0.92576 1.22375 0.97912 0.96659 0.99790 0.74197 0.84923 0.87691 0.88845 0.83725 0.87840 0.88555 0.86902 0.92327 0.93007 0.90432 0.91441 0.91393 0.92122 0.92165 0.97646 0.94019 0.99207 0.91898 0.91201 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 19.25 74.32 1.43 -1.78 16 2 C -0.23 -4.83 11.73 31.12 0.37 -4.47 16 3 C 0.21 4.27 5.01 84.57 0.42 4.70 16 4 N -0.59 -16.17 2.37 -808.18 -1.91 -18.08 16 5 C 0.54 14.99 7.45 87.66 0.65 15.64 16 6 O -0.58 -20.91 13.16 -3.04 -0.04 -20.95 16 7 C -0.17 -3.14 4.69 -11.77 -0.06 -3.19 16 8 H 0.15 2.04 6.97 -2.38 -0.02 2.02 16 9 C -0.11 -1.66 10.00 30.38 0.30 -1.35 16 10 C -0.14 -2.59 2.50 -52.28 -0.13 -2.72 16 11 C -0.11 -1.38 6.88 31.41 0.22 -1.16 16 12 C 0.04 0.58 7.65 72.56 0.56 1.14 16 13 O -0.40 -10.16 11.65 -148.98 -1.74 -11.90 16 14 C 0.09 2.42 5.65 72.21 0.41 2.82 16 15 C 0.16 5.44 2.48 45.02 0.11 5.56 16 16 C -0.11 -3.99 4.73 30.67 0.15 -3.85 16 17 C 0.14 6.21 6.51 86.36 0.56 6.78 16 18 N -0.61 -30.83 2.99 -698.26 -2.09 -32.91 16 19 C -0.26 -14.52 9.58 84.03 0.81 -13.71 16 20 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 21 C -0.05 -2.77 4.92 84.86 0.42 -2.36 16 22 N -0.94 -55.73 11.18 21.65 0.24 -55.49 16 23 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 27 C 0.18 8.89 5.33 86.51 0.46 9.36 16 28 C -0.13 -4.76 5.33 30.82 0.16 -4.60 16 29 H 0.24 2.66 7.80 -4.42 -0.03 2.62 16 30 H 0.13 1.74 6.64 -2.39 -0.02 1.72 16 31 H 0.11 2.20 6.46 -2.38 -0.02 2.18 16 32 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.14 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 1.60 7.05 -2.39 -0.02 1.58 16 39 H 0.08 2.22 8.04 -2.39 -0.02 2.20 16 40 H 0.07 2.79 6.90 -2.39 -0.02 2.78 16 41 H 0.07 2.33 7.02 -2.39 -0.02 2.31 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 46 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 47 H 0.06 3.44 6.04 -2.39 -0.01 3.42 16 48 H 0.07 2.46 6.73 -2.39 -0.02 2.44 16 49 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -72.58 387.15 4.26 -68.32 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.93 Total: 17.70 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.84 Total: 6.80 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.76 Total: -106.48 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.78 Total: -32.85 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -72.58 4.26 -68.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373735.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.040 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds