Wall clock time and date at job start Tue Mar 31 2020 16:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47303 * 229.48916 * 3 2 1 5 5 C 1.34780 * 119.99932 * 89.99292 * 4 3 2 6 6 O 1.21291 * 119.99684 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.00170 * 359.73336 * 5 4 3 8 8 H 1.09001 * 115.56309 * 34.19095 * 7 5 4 9 9 C 1.53177 * 117.52330 * 180.02562 * 7 5 4 10 10 C 1.52118 * 59.77896 * 107.42248 * 9 7 5 11 11 C 1.54036 * 121.47565 * 249.14575 * 10 9 7 12 12 C 1.55188 * 101.83289 * 195.69461 * 11 10 9 13 13 O 1.44453 * 103.62755 * 36.32944 * 12 11 10 14 14 C 1.43990 * 107.04996 * 320.43049 * 13 12 11 15 15 C 1.46499 * 119.99934 * 270.00289 * 4 3 2 16 16 C 1.53040 * 109.46239 * 60.02086 * 15 4 3 17 17 C 1.53191 * 109.31207 * 178.59960 * 16 15 4 18 18 N 1.46929 * 108.76501 * 54.65874 * 17 16 15 19 19 C 1.36935 * 120.63103 * 126.40128 * 18 17 16 20 20 H 1.08001 * 120.00214 * 331.55955 * 19 18 17 21 21 C 1.38809 * 120.00242 * 151.55565 * 19 18 17 22 22 N 1.31614 * 120.00481 * 158.88116 * 21 19 18 23 23 Si 1.86804 * 119.99534 * 338.87874 * 21 19 18 24 24 H 1.48504 * 109.47180 * 90.13055 * 23 21 19 25 25 H 1.48499 * 109.47193 * 210.12940 * 23 21 19 26 26 H 1.48498 * 109.47404 * 330.12867 * 23 21 19 27 27 C 1.46924 * 118.73661 * 306.38295 * 18 17 16 28 28 C 1.53042 * 109.45992 * 299.96641 * 15 4 3 29 29 H 4.40648 * 5.51304 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47671 * 109.48883 * 3 2 1 31 31 H 1.09006 * 109.46929 * 349.48733 * 3 2 1 32 32 H 1.09001 * 117.52195 * 214.85231 * 9 7 5 33 33 H 1.09000 * 117.51956 * 359.97438 * 9 7 5 34 34 H 1.09002 * 110.95840 * 313.83032 * 11 10 9 35 35 H 1.09009 * 110.95834 * 77.56003 * 11 10 9 36 36 H 1.09005 * 110.58832 * 277.79773 * 12 11 10 37 37 H 1.09000 * 110.72494 * 154.92621 * 12 11 10 38 38 H 1.09002 * 109.97724 * 266.93522 * 14 13 12 39 39 H 1.09002 * 110.00392 * 145.68986 * 14 13 12 40 40 H 1.09003 * 109.45870 * 179.97438 * 15 4 3 41 41 H 1.08996 * 109.50009 * 298.57136 * 16 15 4 42 42 H 1.09005 * 109.49803 * 58.66591 * 16 15 4 43 43 H 1.09001 * 109.59953 * 294.86780 * 17 16 15 44 44 H 1.09000 * 109.58417 * 174.44001 * 17 16 15 45 45 H 0.96996 * 120.00131 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.58336 * 293.81788 * 27 18 17 47 47 H 1.08994 * 109.58442 * 173.39272 * 27 18 17 48 48 H 1.08996 * 109.49518 * 301.33891 * 28 15 4 49 49 H 1.09001 * 109.49509 * 61.40196 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8981 1.0501 5 6 3.3587 0.4235 2.2914 6 8 3.7622 1.1666 3.1609 7 6 3.1023 -1.0289 2.6007 8 1 3.3060 -1.7260 1.7878 9 6 3.3763 -1.5074 4.0298 10 6 1.9461 -1.3555 3.5341 11 6 1.0184 -0.2537 4.0801 12 6 -0.3753 -0.7503 3.6120 13 8 -0.2848 -2.1865 3.7379 14 6 1.0342 -2.5662 3.3027 15 6 3.3774 2.3114 0.7510 16 6 2.0755 2.9650 0.2820 17 6 2.3260 4.4504 0.0037 18 7 3.4388 4.5720 -0.9480 19 6 3.2941 5.2944 -2.1022 20 1 2.3208 5.3912 -2.5602 21 6 4.3982 5.9023 -2.6836 22 7 4.3739 6.2305 -3.9580 23 14 5.9187 6.2549 -1.6572 24 1 6.8398 5.0918 -1.7214 25 1 6.6054 7.4600 -2.1875 26 1 5.5196 6.4929 -0.2468 27 6 4.7100 3.9040 -0.6373 28 6 4.4328 2.4247 -0.3515 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0092 0.3437 -0.9687 31 1 3.0097 -1.0097 0.1875 32 1 3.7604 -2.5195 4.1571 33 1 3.7423 -0.7716 4.7458 34 1 1.0696 -0.2045 5.1678 35 1 1.2574 0.7127 3.6360 36 1 -0.5547 -0.4669 2.5748 37 1 -1.1614 -0.3577 4.2570 38 1 1.0174 -2.8226 2.2434 39 1 1.3888 -3.4162 3.8856 40 1 3.7340 2.8164 1.6488 41 1 1.7312 2.4768 -0.6297 42 1 1.3171 2.8634 1.0583 43 1 2.5830 4.9583 0.9333 44 1 1.4290 4.8984 -0.4239 45 1 5.1453 6.6556 -4.3641 46 1 5.1614 4.3673 0.2399 47 1 5.3860 3.9913 -1.4879 48 1 5.3525 1.9385 -0.0261 49 1 4.0663 1.9412 -1.2570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733373736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:50 Heat of formation + Delta-G solvation = 37.318899 kcal Electronic energy + Delta-G solvation = -30107.426212 eV Core-core repulsion = 26231.161231 eV Total energy + Delta-G solvation = -3876.264981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.97339 -39.49216 -37.85373 -36.04908 -35.80297 -33.15159 -32.23345 -30.68322 -30.46047 -30.35782 -27.86721 -27.28844 -25.67701 -23.84906 -23.06174 -22.83006 -21.69293 -20.36621 -19.60461 -19.25157 -17.94093 -17.47263 -16.89084 -16.55340 -16.49923 -16.14246 -15.34012 -15.10703 -15.03620 -14.26183 -14.19802 -13.90711 -13.76378 -13.70942 -13.47498 -13.17639 -13.04638 -12.87154 -12.82005 -12.44410 -12.38619 -12.01390 -11.84789 -11.71928 -11.33989 -11.14436 -10.90826 -10.75003 -10.67231 -10.54339 -10.39533 -10.22222 -10.19606 -10.10685 -9.96526 -9.88821 -9.63658 -9.52797 -8.73631 -8.62113 -7.01222 -5.98342 -3.34689 2.26475 2.39839 2.75170 3.17250 3.30194 3.44856 3.47781 3.51682 3.60087 3.98220 4.23578 4.34047 4.36524 4.50920 4.53044 4.62603 4.87712 4.91339 4.98937 5.08779 5.10130 5.18685 5.25426 5.30440 5.32740 5.37033 5.41219 5.43360 5.48675 5.63155 5.65233 5.70612 5.77154 5.79329 5.82768 5.98171 6.01033 6.15785 6.26594 6.36190 6.49860 6.57567 6.59705 6.62332 6.64734 6.85929 7.32659 7.52137 7.93705 8.09118 8.30126 8.90882 9.68918 10.06792 11.17599 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.003270 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.286770 B = 8560.989237 C = 9065.608015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.199 4.199 3 C 0.214 3.786 4 N -0.597 5.597 5 C 0.547 3.453 6 O -0.535 6.535 7 C -0.175 4.175 8 H 0.126 0.874 9 C -0.126 4.126 10 C -0.133 4.133 11 C -0.120 4.120 12 C 0.049 3.951 13 O -0.375 6.375 14 C 0.086 3.914 15 C 0.145 3.855 16 C -0.136 4.136 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.261 4.261 20 H 0.085 0.915 21 C 0.026 3.974 22 N -0.907 5.907 23 Si 0.880 3.120 24 H -0.287 1.287 25 H -0.302 1.302 26 H -0.271 1.271 27 C 0.130 3.870 28 C -0.141 4.141 29 H 0.215 0.785 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.263 0.737 46 H 0.026 0.974 47 H 0.078 0.922 48 H 0.058 0.942 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -19.287 13.420 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.200 4.200 3 C 0.092 3.908 4 N -0.327 5.327 5 C 0.335 3.665 6 O -0.412 6.412 7 C -0.196 4.196 8 H 0.143 0.857 9 C -0.164 4.164 10 C -0.134 4.134 11 C -0.158 4.158 12 C -0.028 4.028 13 O -0.294 6.294 14 C 0.010 3.990 15 C 0.043 3.957 16 C -0.176 4.176 17 C 0.024 3.976 18 N -0.329 5.329 19 C -0.389 4.389 20 H 0.103 0.897 21 C -0.174 4.174 22 N -0.550 5.550 23 Si 0.710 3.290 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.196 1.196 27 C 0.003 3.997 28 C -0.181 4.181 29 H 0.232 0.768 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.044 0.956 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.837 -18.905 13.800 24.123 hybrid contribution 0.915 0.360 0.112 0.990 sum -4.922 -18.545 13.913 23.700 Atomic orbital electron populations 1.24852 0.95825 1.00117 0.99679 1.23406 0.94735 1.00803 1.01046 1.18428 0.84042 0.94890 0.93451 1.48138 1.64518 1.10618 1.09458 1.19542 0.76759 0.88318 0.81887 1.90697 1.45872 1.58929 1.45690 1.22371 1.05368 0.95563 0.96322 0.85650 1.22970 0.95643 1.02953 0.94797 1.22150 0.90724 0.98284 1.02211 1.22614 0.93558 0.97804 1.01790 1.23609 0.97193 0.80699 1.01257 1.88912 1.31206 1.22144 1.87171 1.22526 0.81765 0.94993 0.99764 1.21213 0.96310 0.78742 0.99437 1.22354 0.95689 0.98904 1.00663 1.20904 0.92052 0.92028 0.92617 1.44389 1.09154 1.57650 1.21682 1.18898 0.96875 1.25464 0.97675 0.89731 1.25295 0.97913 0.98276 0.95866 1.69837 1.30908 1.44326 1.09886 0.87004 0.83588 0.76932 0.81462 1.21463 1.23045 1.19618 1.21318 0.89643 0.89521 0.99187 1.22406 0.97562 1.00107 0.97997 0.76831 0.87326 0.88427 0.87527 0.86953 0.89726 0.89855 0.91659 0.88861 0.91796 0.89275 0.88407 0.91465 0.92749 0.95819 0.91541 0.92723 0.95610 0.90429 0.92360 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 18.28 29.55 0.54 -1.38 16 2 C -0.20 -2.23 12.07 -37.12 -0.45 -2.68 16 3 C 0.21 2.30 5.17 -6.83 -0.04 2.27 16 4 N -0.60 -7.87 2.37 -169.37 -0.40 -8.28 16 5 C 0.55 7.36 6.15 -10.99 -0.07 7.29 16 6 O -0.53 -9.06 15.39 5.55 0.09 -8.97 16 7 C -0.18 -1.72 5.19 -92.12 -0.48 -2.20 16 8 H 0.13 0.95 6.43 -51.93 -0.33 0.62 16 9 C -0.13 -1.11 9.82 -27.09 -0.27 -1.38 16 10 C -0.13 -1.23 2.44 -154.69 -0.38 -1.60 16 11 C -0.12 -1.22 6.74 -25.03 -0.17 -1.39 16 12 C 0.05 0.46 7.73 38.32 0.30 0.75 16 13 O -0.38 -3.96 11.53 -35.23 -0.41 -4.37 16 14 C 0.09 0.73 7.50 37.33 0.28 1.01 16 15 C 0.14 2.32 2.48 -67.89 -0.17 2.15 16 16 C -0.14 -2.24 4.73 -26.61 -0.13 -2.36 16 17 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 18 N -0.61 -14.12 2.75 -172.33 -0.47 -14.59 16 19 C -0.26 -7.18 10.02 -15.06 -0.15 -7.33 16 20 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 21 C 0.03 0.73 5.21 -17.43 -0.09 0.64 16 22 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 23 Si 0.88 22.25 24.39 -169.99 -4.15 18.11 16 24 H -0.29 -6.95 6.52 56.52 0.37 -6.58 16 25 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.27 -6.83 6.88 56.52 0.39 -6.44 16 27 C 0.13 2.78 4.21 -3.71 -0.02 2.77 16 28 C -0.14 -2.41 5.31 -26.61 -0.14 -2.55 16 29 H 0.21 1.59 7.80 -54.08 -0.42 1.17 16 30 H 0.11 1.20 6.46 -51.93 -0.34 0.86 16 31 H 0.10 0.77 6.00 -51.93 -0.31 0.46 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.11 1.16 7.67 -51.93 -0.40 0.76 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.02 6.78 -51.92 -0.35 0.67 16 36 H 0.07 0.61 7.14 -51.93 -0.37 0.24 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.77 6.90 -51.93 -0.36 1.41 16 41 H 0.07 1.14 7.02 -51.93 -0.36 0.78 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.03 0.56 7.21 -51.93 -0.37 0.19 16 47 H 0.08 1.82 4.60 -51.93 -0.24 1.58 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.07 1.15 6.72 -51.93 -0.35 0.81 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -32.75 380.65 -7.88 -40.63 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.61 Total: 1.53 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.44 Total: -3.07 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.10 Total: -49.58 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.32 Total: -13.34 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.15 Total: 18.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.75 -7.88 -40.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.947 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds