Wall clock time and date at job start Tue Mar 31 2020 16:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47303 * 229.48916 * 3 2 1 5 5 C 1.34780 * 119.99932 * 89.99292 * 4 3 2 6 6 O 1.21291 * 119.99684 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.00170 * 359.73336 * 5 4 3 8 8 H 1.09001 * 115.56309 * 34.19095 * 7 5 4 9 9 C 1.53177 * 117.52330 * 180.02562 * 7 5 4 10 10 C 1.52118 * 59.77896 * 107.42248 * 9 7 5 11 11 C 1.54036 * 121.47565 * 249.14575 * 10 9 7 12 12 C 1.55188 * 101.83289 * 195.69461 * 11 10 9 13 13 O 1.44453 * 103.62755 * 36.32944 * 12 11 10 14 14 C 1.43990 * 107.04996 * 320.43049 * 13 12 11 15 15 C 1.46499 * 119.99934 * 270.00289 * 4 3 2 16 16 C 1.53040 * 109.46239 * 60.02086 * 15 4 3 17 17 C 1.53191 * 109.31207 * 178.59960 * 16 15 4 18 18 N 1.46929 * 108.76501 * 54.65874 * 17 16 15 19 19 C 1.36935 * 120.63103 * 126.40128 * 18 17 16 20 20 H 1.08001 * 120.00214 * 331.55955 * 19 18 17 21 21 C 1.38809 * 120.00242 * 151.55565 * 19 18 17 22 22 N 1.31614 * 120.00481 * 158.88116 * 21 19 18 23 23 Si 1.86804 * 119.99534 * 338.87874 * 21 19 18 24 24 H 1.48504 * 109.47180 * 90.13055 * 23 21 19 25 25 H 1.48499 * 109.47193 * 210.12940 * 23 21 19 26 26 H 1.48498 * 109.47404 * 330.12867 * 23 21 19 27 27 C 1.46924 * 118.73661 * 306.38295 * 18 17 16 28 28 C 1.53042 * 109.45992 * 299.96641 * 15 4 3 29 29 H 4.40648 * 5.51304 * 179.97438 * 4 1 2 30 30 H 1.08997 * 109.47671 * 109.48883 * 3 2 1 31 31 H 1.09006 * 109.46929 * 349.48733 * 3 2 1 32 32 H 1.09001 * 117.52195 * 214.85231 * 9 7 5 33 33 H 1.09000 * 117.51956 * 359.97438 * 9 7 5 34 34 H 1.09002 * 110.95840 * 313.83032 * 11 10 9 35 35 H 1.09009 * 110.95834 * 77.56003 * 11 10 9 36 36 H 1.09005 * 110.58832 * 277.79773 * 12 11 10 37 37 H 1.09000 * 110.72494 * 154.92621 * 12 11 10 38 38 H 1.09002 * 109.97724 * 266.93522 * 14 13 12 39 39 H 1.09002 * 110.00392 * 145.68986 * 14 13 12 40 40 H 1.09003 * 109.45870 * 179.97438 * 15 4 3 41 41 H 1.08996 * 109.50009 * 298.57136 * 16 15 4 42 42 H 1.09005 * 109.49803 * 58.66591 * 16 15 4 43 43 H 1.09001 * 109.59953 * 294.86780 * 17 16 15 44 44 H 1.09000 * 109.58417 * 174.44001 * 17 16 15 45 45 H 0.96996 * 120.00131 * 179.97438 * 22 21 19 46 46 H 1.08996 * 109.58336 * 293.81788 * 27 18 17 47 47 H 1.08994 * 109.58442 * 173.39272 * 27 18 17 48 48 H 1.08996 * 109.49518 * 301.33891 * 28 15 4 49 49 H 1.09001 * 109.49509 * 61.40196 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.8981 1.0501 5 6 3.3587 0.4235 2.2914 6 8 3.7622 1.1666 3.1609 7 6 3.1023 -1.0289 2.6007 8 1 3.3060 -1.7260 1.7878 9 6 3.3763 -1.5074 4.0298 10 6 1.9461 -1.3555 3.5341 11 6 1.0184 -0.2537 4.0801 12 6 -0.3753 -0.7503 3.6120 13 8 -0.2848 -2.1865 3.7379 14 6 1.0342 -2.5662 3.3027 15 6 3.3774 2.3114 0.7510 16 6 2.0755 2.9650 0.2820 17 6 2.3260 4.4504 0.0037 18 7 3.4388 4.5720 -0.9480 19 6 3.2941 5.2944 -2.1022 20 1 2.3208 5.3912 -2.5602 21 6 4.3982 5.9023 -2.6836 22 7 4.3739 6.2305 -3.9580 23 14 5.9187 6.2549 -1.6572 24 1 6.8398 5.0918 -1.7214 25 1 6.6054 7.4600 -2.1875 26 1 5.5196 6.4929 -0.2468 27 6 4.7100 3.9040 -0.6373 28 6 4.4328 2.4247 -0.3515 29 1 -1.0502 -0.0001 -0.0004 30 1 3.0092 0.3437 -0.9687 31 1 3.0097 -1.0097 0.1875 32 1 3.7604 -2.5195 4.1571 33 1 3.7423 -0.7716 4.7458 34 1 1.0696 -0.2045 5.1678 35 1 1.2574 0.7127 3.6360 36 1 -0.5547 -0.4669 2.5748 37 1 -1.1614 -0.3577 4.2570 38 1 1.0174 -2.8226 2.2434 39 1 1.3888 -3.4162 3.8856 40 1 3.7340 2.8164 1.6488 41 1 1.7312 2.4768 -0.6297 42 1 1.3171 2.8634 1.0583 43 1 2.5830 4.9583 0.9333 44 1 1.4290 4.8984 -0.4239 45 1 5.1453 6.6556 -4.3641 46 1 5.1614 4.3673 0.2399 47 1 5.3860 3.9913 -1.4879 48 1 5.3525 1.9385 -0.0261 49 1 4.0663 1.9412 -1.2570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733373736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:49 Heat of formation + Delta-G solvation = 17.008047 kcal Electronic energy + Delta-G solvation = -30108.306957 eV Core-core repulsion = 26231.161231 eV Total energy + Delta-G solvation = -3877.145726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.89884 -40.45796 -39.18691 -37.21330 -36.73815 -34.66008 -33.58999 -32.15588 -32.00943 -31.30750 -28.60028 -28.25287 -27.15254 -25.19770 -24.40441 -23.76934 -23.18659 -21.26535 -20.90190 -20.26494 -19.00097 -18.60083 -18.39846 -17.63724 -17.38268 -17.11945 -16.76042 -16.04031 -16.01853 -15.95141 -15.40521 -15.33410 -14.87737 -14.75832 -14.64870 -14.51366 -14.22849 -14.15633 -13.88437 -13.67983 -13.50423 -13.46717 -13.22633 -12.69223 -12.63444 -12.46858 -12.29644 -12.10792 -12.03356 -11.85975 -11.56427 -11.49916 -11.46958 -11.36500 -11.22661 -10.89918 -10.84957 -10.69980 -10.54298 -9.88376 -8.98454 -8.19063 -5.51574 1.27513 1.30494 1.40151 1.46326 1.49235 1.95262 2.27479 2.39231 2.69310 2.92071 3.02496 3.20795 3.29754 3.49784 3.58562 3.60729 3.69515 3.83293 3.93570 3.94454 4.12825 4.18350 4.22142 4.27160 4.34207 4.40006 4.44313 4.53466 4.62381 4.66741 4.71688 4.72162 4.77843 4.81523 4.83841 4.88625 4.92467 4.95401 4.97299 5.00465 5.08836 5.11058 5.11490 5.36407 5.44889 5.81904 5.85021 6.10853 6.29607 6.72946 6.88167 7.05984 7.58559 7.99924 9.00739 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021729 B = 0.003270 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.286770 B = 8560.989237 C = 9065.608015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.225 4.225 3 C 0.211 3.789 4 N -0.594 5.594 5 C 0.544 3.456 6 O -0.576 6.576 7 C -0.177 4.177 8 H 0.155 0.845 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.123 4.123 12 C 0.052 3.948 13 O -0.392 6.392 14 C 0.087 3.913 15 C 0.154 3.846 16 C -0.118 4.118 17 C 0.146 3.854 18 N -0.617 5.617 19 C -0.249 4.249 20 H 0.055 0.945 21 C -0.027 4.027 22 N -0.953 5.953 23 Si 0.939 3.061 24 H -0.269 1.269 25 H -0.309 1.309 26 H -0.270 1.270 27 C 0.124 3.876 28 C -0.128 4.128 29 H 0.236 0.764 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.262 0.738 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -22.329 14.789 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.226 4.226 3 C 0.090 3.910 4 N -0.323 5.323 5 C 0.334 3.666 6 O -0.456 6.456 7 C -0.198 4.198 8 H 0.173 0.827 9 C -0.157 4.157 10 C -0.131 4.131 11 C -0.160 4.160 12 C -0.024 4.024 13 O -0.311 6.311 14 C 0.010 3.990 15 C 0.050 3.950 16 C -0.157 4.157 17 C 0.021 3.979 18 N -0.342 5.342 19 C -0.378 4.378 20 H 0.072 0.928 21 C -0.222 4.222 22 N -0.598 5.598 23 Si 0.768 3.232 24 H -0.195 1.195 25 H -0.238 1.238 26 H -0.195 1.195 27 C -0.001 4.001 28 C -0.168 4.168 29 H 0.253 0.747 30 H 0.124 0.876 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.837 -21.998 15.195 27.365 hybrid contribution 0.784 1.304 -0.277 1.546 sum -5.052 -20.694 14.919 26.006 Atomic orbital electron populations 1.25512 0.96627 0.99114 0.98601 1.23617 0.95217 1.01772 1.02026 1.18664 0.84069 0.95908 0.92385 1.48043 1.64430 1.09566 1.10298 1.20166 0.75609 0.89657 0.81152 1.90681 1.47713 1.60350 1.46845 1.22417 1.06153 0.93362 0.97839 0.82732 1.23068 0.95171 1.03984 0.93454 1.22163 0.90835 0.98242 1.01811 1.22573 0.94690 0.97089 1.01674 1.23612 0.96933 0.80448 1.01448 1.88897 1.32383 1.22391 1.87427 1.22677 0.80610 0.94868 1.00822 1.20839 0.95395 0.80734 0.97988 1.22111 0.96385 0.96381 1.00856 1.21037 0.90688 0.94418 0.91773 1.44487 1.10730 1.57677 1.21276 1.18838 0.95557 1.24947 0.98475 0.92759 1.25842 1.00938 0.98905 0.96562 1.69949 1.32048 1.46391 1.11455 0.86041 0.80706 0.76858 0.79611 1.19539 1.23792 1.19520 1.21332 0.88401 0.92195 0.98188 1.22224 0.98917 0.96966 0.98697 0.74703 0.87641 0.85121 0.84353 0.88951 0.89804 0.92295 0.91669 0.87882 0.90707 0.87349 0.90352 0.91709 0.91550 0.95420 0.92039 0.92846 0.95624 0.92391 0.90471 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 18.28 74.32 1.36 -1.90 16 2 C -0.23 -4.49 12.07 31.13 0.38 -4.12 16 3 C 0.21 3.94 5.17 84.57 0.44 4.38 16 4 N -0.59 -14.49 2.37 -808.14 -1.91 -16.41 16 5 C 0.54 13.69 6.15 87.66 0.54 14.23 16 6 O -0.58 -19.20 15.39 -3.06 -0.05 -19.25 16 7 C -0.18 -2.94 5.19 -11.77 -0.06 -3.00 16 8 H 0.16 1.62 6.43 -2.39 -0.02 1.61 16 9 C -0.12 -1.77 9.82 30.36 0.30 -1.47 16 10 C -0.13 -2.05 2.44 -52.30 -0.13 -2.17 16 11 C -0.12 -2.34 6.74 31.69 0.21 -2.13 16 12 C 0.05 0.88 7.73 72.73 0.56 1.44 16 13 O -0.39 -7.23 11.53 -148.98 -1.72 -8.95 16 14 C 0.09 1.16 7.50 72.09 0.54 1.70 16 15 C 0.15 4.73 2.48 45.02 0.11 4.84 16 16 C -0.12 -3.75 4.73 30.67 0.15 -3.61 16 17 C 0.15 5.72 6.52 86.36 0.56 6.28 16 18 N -0.62 -28.86 2.75 -699.12 -1.92 -30.78 16 19 C -0.25 -13.98 10.02 84.03 0.84 -13.14 16 20 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 21 C -0.03 -1.58 5.21 84.86 0.44 -1.13 16 22 N -0.95 -59.28 13.97 21.65 0.30 -58.98 16 23 Si 0.94 46.58 24.39 68.60 1.67 48.25 16 24 H -0.27 -12.44 6.52 99.48 0.65 -11.79 16 25 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 26 H -0.27 -13.20 6.88 99.48 0.68 -12.52 16 27 C 0.12 5.24 4.21 86.36 0.36 5.61 16 28 C -0.13 -4.20 5.31 30.67 0.16 -4.04 16 29 H 0.24 2.84 7.80 -4.41 -0.03 2.80 16 30 H 0.11 2.06 6.46 -2.39 -0.02 2.05 16 31 H 0.13 1.53 6.00 -2.38 -0.01 1.52 16 32 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.79 7.67 -2.39 -0.02 1.77 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 1.42 6.78 -2.38 -0.02 1.40 16 36 H 0.07 1.09 7.14 -2.38 -0.02 1.08 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 2.78 6.90 -2.39 -0.02 2.76 16 41 H 0.06 2.12 7.02 -2.39 -0.02 2.10 16 42 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 2.42 7.93 -2.39 -0.02 2.41 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 46 H 0.03 1.09 7.21 -2.39 -0.02 1.07 16 47 H 0.06 2.67 4.60 -2.39 -0.01 2.66 16 48 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 49 H 0.07 2.34 6.72 -2.39 -0.02 2.32 16 Total: -1.00 -72.66 380.65 4.00 -68.65 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.86 Total: 15.67 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 6.77 Total: 1.78 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -3.53 Total: -106.16 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -1.77 Total: -28.20 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -72.66 4.00 -68.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.662 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds