Wall clock time and date at job start Tue Mar 31 2020 16:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47228 * 106.23210 * 3 2 1 5 5 C 1.34779 * 120.00303 * 89.99787 * 4 3 2 6 6 O 1.21274 * 120.00191 * 180.02562 * 5 4 3 7 7 C 1.50704 * 119.99514 * 0.27497 * 5 4 3 8 8 H 1.08994 * 115.56780 * 33.95297 * 7 5 4 9 9 C 1.53182 * 117.51883 * 248.09913 * 7 5 4 10 10 C 1.52138 * 117.51636 * 179.72687 * 7 5 4 11 11 C 1.54036 * 121.46687 * 356.55877 * 10 7 5 12 12 C 1.55184 * 101.82526 * 195.73638 * 11 10 7 13 13 O 1.44453 * 103.63824 * 36.32538 * 12 11 10 14 14 C 1.43990 * 107.04190 * 320.42520 * 13 12 11 15 15 C 1.46503 * 120.00023 * 269.99849 * 4 3 2 16 16 C 1.53036 * 109.45931 * 60.06480 * 15 4 3 17 17 C 1.53187 * 109.31422 * 178.61437 * 16 15 4 18 18 N 1.46929 * 108.77298 * 54.63653 * 17 16 15 19 19 C 1.36940 * 120.62861 * 126.37169 * 18 17 16 20 20 H 1.08005 * 119.99608 * 207.68653 * 19 18 17 21 21 C 1.38810 * 120.00491 * 27.69333 * 19 18 17 22 22 N 1.31626 * 119.99585 * 17.36012 * 21 19 18 23 23 Si 1.86792 * 120.00219 * 197.36020 * 21 19 18 24 24 H 1.48499 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46918 * 120.00049 * 23 21 19 26 26 H 1.48494 * 109.47433 * 239.99635 * 23 21 19 27 27 C 1.46928 * 118.73874 * 306.38827 * 18 17 16 28 28 C 1.53039 * 109.45806 * 299.99776 * 15 4 3 29 29 H 4.40638 * 5.51436 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47469 * 346.22909 * 3 2 1 31 31 H 1.09003 * 109.47039 * 226.22487 * 3 2 1 32 32 H 1.09004 * 117.52231 * 359.97438 * 9 7 5 33 33 H 1.08997 * 117.52052 * 145.15682 * 9 7 5 34 34 H 1.08996 * 110.95615 * 313.86711 * 11 10 7 35 35 H 1.08995 * 110.95493 * 77.60519 * 11 10 7 36 36 H 1.08994 * 110.59371 * 277.78066 * 12 11 10 37 37 H 1.09007 * 110.58751 * 154.85751 * 12 11 10 38 38 H 1.08999 * 109.97698 * 266.94742 * 14 13 12 39 39 H 1.09000 * 110.00511 * 145.69278 * 14 13 12 40 40 H 1.09001 * 109.46042 * 180.02562 * 15 4 3 41 41 H 1.09002 * 109.50199 * 298.57056 * 16 15 4 42 42 H 1.09006 * 109.49787 * 58.66279 * 16 15 4 43 43 H 1.08999 * 109.59028 * 294.85310 * 17 16 15 44 44 H 1.08999 * 109.59155 * 174.42090 * 17 16 15 45 45 H 0.96995 * 119.99701 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.58955 * 293.82438 * 27 18 17 47 47 H 1.09006 * 109.70175 * 173.46659 * 27 18 17 48 48 H 1.08995 * 109.49829 * 301.33810 * 28 15 4 49 49 H 1.09005 * 109.49792 * 61.39926 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.3870 -1.3262 5 6 3.3582 1.6853 -1.6100 6 8 3.7618 2.0052 -2.7079 7 6 3.1124 2.7391 -0.5611 8 1 3.3208 2.4385 0.4656 9 6 1.9517 3.7116 -0.7931 10 6 3.3898 4.1862 -0.9400 11 6 3.9766 4.5592 -2.3145 12 6 4.4502 6.0171 -2.0731 13 8 4.9306 5.9980 -0.7109 14 6 4.0218 5.1763 0.0455 15 6 3.3788 -0.6380 -2.3439 16 6 2.0773 -1.3889 -2.6344 17 6 2.3290 -2.4363 -3.7236 18 7 3.4419 -3.2983 -3.3025 19 6 3.2973 -4.6597 -3.2730 20 1 3.8836 -5.2502 -2.5845 21 6 2.3973 -5.2809 -4.1281 22 7 1.9403 -4.6385 -5.1821 23 14 1.8349 -7.0284 -3.7829 24 1 2.4901 -7.5240 -2.5459 25 1 0.3608 -7.0476 -3.6035 26 1 2.2059 -7.9025 -4.9245 27 6 4.7126 -2.6718 -2.9134 28 6 4.4342 -1.6217 -1.8333 29 1 -1.0501 0.0002 0.0002 30 1 3.0098 -0.9972 0.2446 31 1 3.0089 0.7118 0.7421 32 1 1.3665 3.5891 -1.7046 33 1 1.3963 4.0506 0.0813 34 1 4.8170 3.9131 -2.5679 35 1 3.2103 4.5214 -3.0887 36 1 3.6176 6.7128 -2.1764 37 1 5.2558 6.2771 -2.7600 38 1 3.2479 5.7963 0.4981 39 1 4.5651 4.6350 0.8200 40 1 3.7362 -0.1641 -3.2581 41 1 1.7323 -1.8837 -1.7266 42 1 1.3191 -0.6841 -2.9758 43 1 2.5865 -1.9374 -4.6579 44 1 1.4324 -3.0399 -3.8644 45 1 1.3118 -5.0726 -5.7798 46 1 5.1645 -2.1921 -3.7816 47 1 5.3907 -3.4294 -2.5204 48 1 5.3534 -1.0827 -1.6044 49 1 4.0672 -2.1139 -0.9326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733373737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:53 Heat of formation + Delta-G solvation = 33.908938 kcal Electronic energy + Delta-G solvation = -29525.314536 eV Core-core repulsion = 25648.901688 eV Total energy + Delta-G solvation = -3876.412848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.83539 -39.38214 -37.58040 -35.89247 -35.65595 -33.09194 -32.11966 -30.52500 -30.21868 -29.61087 -27.78037 -27.14973 -25.52307 -23.98845 -22.86692 -22.21478 -21.76289 -20.20257 -19.47599 -19.05246 -17.85894 -17.33689 -16.82574 -16.38549 -16.13930 -15.76170 -15.38875 -15.08708 -14.74817 -14.27149 -13.89497 -13.73993 -13.64254 -13.49767 -13.23676 -13.11538 -12.90554 -12.82327 -12.60451 -12.36406 -12.35019 -11.67600 -11.50051 -11.22013 -11.14478 -10.97521 -10.75500 -10.68955 -10.55373 -10.43617 -10.28742 -10.15881 -10.14672 -9.98224 -9.87687 -9.76180 -9.66312 -9.38585 -8.63333 -8.41497 -6.70911 -5.80684 -3.22892 2.41632 2.52200 2.85285 3.27699 3.35625 3.43513 3.45537 3.49260 3.69274 4.10957 4.32507 4.38212 4.47815 4.52054 4.64196 4.77533 5.00394 5.08357 5.17058 5.19041 5.29488 5.34261 5.36260 5.37705 5.43259 5.48943 5.50358 5.59522 5.60872 5.67801 5.82914 5.86585 5.92972 6.05798 6.14612 6.20850 6.29911 6.45827 6.56407 6.59851 6.61396 6.75355 6.85529 6.92685 7.33329 7.46105 7.62640 7.64588 7.78071 8.23472 8.42745 9.18922 9.82389 10.38961 11.28024 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.002825 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.776400 B = 9909.709807 C =10429.618531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.200 4.200 3 C 0.216 3.784 4 N -0.597 5.597 5 C 0.545 3.455 6 O -0.532 6.532 7 C -0.172 4.172 8 H 0.125 0.875 9 C -0.129 4.129 10 C -0.134 4.134 11 C -0.106 4.106 12 C 0.044 3.956 13 O -0.378 6.378 14 C 0.086 3.914 15 C 0.145 3.855 16 C -0.141 4.141 17 C 0.174 3.826 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.148 3.852 28 C -0.139 4.139 29 H 0.215 0.785 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.019 0.981 44 H 0.090 0.910 45 H 0.253 0.747 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 18.186 12.616 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.202 4.202 3 C 0.094 3.906 4 N -0.328 5.328 5 C 0.333 3.667 6 O -0.409 6.409 7 C -0.193 4.193 8 H 0.143 0.857 9 C -0.166 4.166 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.032 4.032 13 O -0.297 6.297 14 C 0.009 3.991 15 C 0.044 3.956 16 C -0.181 4.181 17 C 0.048 3.952 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.021 3.979 28 C -0.179 4.179 29 H 0.232 0.768 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.144 18.376 11.960 21.925 hybrid contribution -0.971 -1.207 0.186 1.561 sum -0.827 17.169 12.146 21.047 Atomic orbital electron populations 1.24876 0.95870 1.00816 0.98982 1.23445 0.94810 1.00575 1.01321 1.18390 0.83987 1.03032 0.85213 1.48217 1.64395 1.06447 1.13713 1.19570 0.76978 0.82506 0.87675 1.90676 1.45793 1.80668 1.23751 1.22266 1.06629 0.90433 0.99931 0.85737 1.22941 0.89985 0.99635 1.04066 1.22184 0.98946 0.94088 0.98300 1.22598 1.02239 0.95330 0.94184 1.23688 0.99290 0.96687 0.83577 1.88913 1.49929 1.69996 1.20846 1.22498 0.92578 0.90814 0.93171 1.21256 0.96703 0.86972 0.90680 1.22535 0.95095 0.98599 1.01889 1.20764 0.93352 0.89848 0.91265 1.44101 1.06899 1.02599 1.77876 1.19216 1.22192 0.82211 1.14553 0.91584 1.25046 1.01813 0.97778 0.95033 1.70047 1.34374 1.37366 1.12802 0.86240 0.78383 0.84580 0.77676 1.20256 1.21596 1.21713 1.20850 0.89552 0.93507 0.93977 1.22398 0.97297 0.97525 1.00708 0.76840 0.87600 0.88550 0.87863 0.87530 0.88573 0.89958 0.92301 0.88895 0.91739 0.89547 0.88512 0.92328 0.93357 0.96273 0.89165 0.93659 0.96196 0.92394 0.92740 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 19.25 29.55 0.57 -1.61 16 2 C -0.20 -2.50 12.07 -37.12 -0.45 -2.95 16 3 C 0.22 2.49 5.18 -6.83 -0.04 2.46 16 4 N -0.60 -8.53 2.37 -169.37 -0.40 -8.93 16 5 C 0.54 7.84 7.45 -10.98 -0.08 7.76 16 6 O -0.53 -9.33 13.11 5.56 0.07 -9.25 16 7 C -0.17 -1.80 5.19 -92.11 -0.48 -2.28 16 8 H 0.12 1.02 6.43 -51.93 -0.33 0.69 16 9 C -0.13 -1.18 10.01 -27.07 -0.27 -1.45 16 10 C -0.13 -1.36 2.44 -154.67 -0.38 -1.73 16 11 C -0.11 -1.20 5.16 -25.03 -0.13 -1.33 16 12 C 0.04 0.43 7.73 38.31 0.30 0.72 16 13 O -0.38 -4.30 11.53 -35.23 -0.41 -4.71 16 14 C 0.09 0.78 7.50 37.33 0.28 1.06 16 15 C 0.15 2.53 2.48 -67.89 -0.17 2.36 16 16 C -0.14 -2.74 4.73 -26.62 -0.13 -2.86 16 17 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 18 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 19 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 20 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.12 11.19 55.49 0.62 -25.50 16 23 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.15 3.07 6.51 -3.71 -0.02 3.05 16 28 C -0.14 -2.37 5.31 -26.61 -0.14 -2.51 16 29 H 0.21 1.83 7.80 -54.09 -0.42 1.40 16 30 H 0.11 1.22 6.45 -51.93 -0.34 0.89 16 31 H 0.10 0.81 5.99 -51.93 -0.31 0.50 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 1.31 6.89 -51.93 -0.36 0.95 16 35 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.10 1.92 6.90 -51.93 -0.36 1.56 16 41 H 0.06 1.15 7.02 -51.93 -0.36 0.78 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 2.42 6.03 -51.93 -0.31 2.11 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.06 1.01 6.72 -51.93 -0.35 0.66 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -32.00 386.86 -8.97 -40.97 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.76 Total: 2.45 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.39 Total: -2.17 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.30 Total: -49.61 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.33 Total: -13.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.00 -8.97 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.876 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds