Wall clock time and date at job start Tue Mar 31 2020 16:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47228 * 106.23210 * 3 2 1 5 5 C 1.34779 * 120.00303 * 89.99787 * 4 3 2 6 6 O 1.21274 * 120.00191 * 180.02562 * 5 4 3 7 7 C 1.50704 * 119.99514 * 0.27497 * 5 4 3 8 8 H 1.08994 * 115.56780 * 33.95297 * 7 5 4 9 9 C 1.53182 * 117.51883 * 248.09913 * 7 5 4 10 10 C 1.52138 * 117.51636 * 179.72687 * 7 5 4 11 11 C 1.54036 * 121.46687 * 356.55877 * 10 7 5 12 12 C 1.55184 * 101.82526 * 195.73638 * 11 10 7 13 13 O 1.44453 * 103.63824 * 36.32538 * 12 11 10 14 14 C 1.43990 * 107.04190 * 320.42520 * 13 12 11 15 15 C 1.46503 * 120.00023 * 269.99849 * 4 3 2 16 16 C 1.53036 * 109.45931 * 60.06480 * 15 4 3 17 17 C 1.53187 * 109.31422 * 178.61437 * 16 15 4 18 18 N 1.46929 * 108.77298 * 54.63653 * 17 16 15 19 19 C 1.36940 * 120.62861 * 126.37169 * 18 17 16 20 20 H 1.08005 * 119.99608 * 207.68653 * 19 18 17 21 21 C 1.38810 * 120.00491 * 27.69333 * 19 18 17 22 22 N 1.31626 * 119.99585 * 17.36012 * 21 19 18 23 23 Si 1.86792 * 120.00219 * 197.36020 * 21 19 18 24 24 H 1.48499 * 109.47125 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46918 * 120.00049 * 23 21 19 26 26 H 1.48494 * 109.47433 * 239.99635 * 23 21 19 27 27 C 1.46928 * 118.73874 * 306.38827 * 18 17 16 28 28 C 1.53039 * 109.45806 * 299.99776 * 15 4 3 29 29 H 4.40638 * 5.51436 * 180.02562 * 4 1 2 30 30 H 1.08996 * 109.47469 * 346.22909 * 3 2 1 31 31 H 1.09003 * 109.47039 * 226.22487 * 3 2 1 32 32 H 1.09004 * 117.52231 * 359.97438 * 9 7 5 33 33 H 1.08997 * 117.52052 * 145.15682 * 9 7 5 34 34 H 1.08996 * 110.95615 * 313.86711 * 11 10 7 35 35 H 1.08995 * 110.95493 * 77.60519 * 11 10 7 36 36 H 1.08994 * 110.59371 * 277.78066 * 12 11 10 37 37 H 1.09007 * 110.58751 * 154.85751 * 12 11 10 38 38 H 1.08999 * 109.97698 * 266.94742 * 14 13 12 39 39 H 1.09000 * 110.00511 * 145.69278 * 14 13 12 40 40 H 1.09001 * 109.46042 * 180.02562 * 15 4 3 41 41 H 1.09002 * 109.50199 * 298.57056 * 16 15 4 42 42 H 1.09006 * 109.49787 * 58.66279 * 16 15 4 43 43 H 1.08999 * 109.59028 * 294.85310 * 17 16 15 44 44 H 1.08999 * 109.59155 * 174.42090 * 17 16 15 45 45 H 0.96995 * 119.99701 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.58955 * 293.82438 * 27 18 17 47 47 H 1.09006 * 109.70175 * 173.46659 * 27 18 17 48 48 H 1.08995 * 109.49829 * 301.33810 * 28 15 4 49 49 H 1.09005 * 109.49792 * 61.39926 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.3870 -1.3262 5 6 3.3582 1.6853 -1.6100 6 8 3.7618 2.0052 -2.7079 7 6 3.1124 2.7391 -0.5611 8 1 3.3208 2.4385 0.4656 9 6 1.9517 3.7116 -0.7931 10 6 3.3898 4.1862 -0.9400 11 6 3.9766 4.5592 -2.3145 12 6 4.4502 6.0171 -2.0731 13 8 4.9306 5.9980 -0.7109 14 6 4.0218 5.1763 0.0455 15 6 3.3788 -0.6380 -2.3439 16 6 2.0773 -1.3889 -2.6344 17 6 2.3290 -2.4363 -3.7236 18 7 3.4419 -3.2983 -3.3025 19 6 3.2973 -4.6597 -3.2730 20 1 3.8836 -5.2502 -2.5845 21 6 2.3973 -5.2809 -4.1281 22 7 1.9403 -4.6385 -5.1821 23 14 1.8349 -7.0284 -3.7829 24 1 2.4901 -7.5240 -2.5459 25 1 0.3608 -7.0476 -3.6035 26 1 2.2059 -7.9025 -4.9245 27 6 4.7126 -2.6718 -2.9134 28 6 4.4342 -1.6217 -1.8333 29 1 -1.0501 0.0002 0.0002 30 1 3.0098 -0.9972 0.2446 31 1 3.0089 0.7118 0.7421 32 1 1.3665 3.5891 -1.7046 33 1 1.3963 4.0506 0.0813 34 1 4.8170 3.9131 -2.5679 35 1 3.2103 4.5214 -3.0887 36 1 3.6176 6.7128 -2.1764 37 1 5.2558 6.2771 -2.7600 38 1 3.2479 5.7963 0.4981 39 1 4.5651 4.6350 0.8200 40 1 3.7362 -0.1641 -3.2581 41 1 1.7323 -1.8837 -1.7266 42 1 1.3191 -0.6841 -2.9758 43 1 2.5865 -1.9374 -4.6579 44 1 1.4324 -3.0399 -3.8644 45 1 1.3118 -5.0726 -5.7798 46 1 5.1645 -2.1921 -3.7816 47 1 5.3907 -3.4294 -2.5204 48 1 5.3534 -1.0827 -1.6044 49 1 4.0672 -2.1139 -0.9326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733373737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:52 Heat of formation + Delta-G solvation = 15.492629 kcal Electronic energy + Delta-G solvation = -29526.113127 eV Core-core repulsion = 25648.901688 eV Total energy + Delta-G solvation = -3877.211439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82690 -40.41155 -38.99134 -37.08004 -36.73849 -34.63338 -33.42688 -32.04410 -31.45677 -31.12962 -28.56825 -28.20105 -27.11370 -25.29626 -23.91553 -23.68936 -23.22237 -21.20329 -20.82577 -20.20422 -18.93098 -18.64103 -18.29880 -17.42607 -16.98168 -16.89295 -16.66337 -16.29436 -15.92094 -15.65988 -15.42677 -15.11746 -14.86840 -14.72499 -14.47275 -14.30325 -14.27703 -13.94688 -13.80516 -13.57354 -13.21507 -13.19419 -13.05673 -12.68814 -12.57970 -12.45682 -12.24209 -12.00456 -11.95717 -11.89969 -11.59571 -11.47063 -11.39439 -11.29628 -11.21670 -10.87108 -10.61515 -10.59767 -10.52064 -9.81055 -8.74481 -7.89572 -5.35337 1.37725 1.45589 1.47553 1.51094 1.58404 1.96631 2.30175 2.50043 2.67384 2.95882 3.25626 3.28195 3.52625 3.58295 3.61075 3.66641 3.79443 3.91768 4.03036 4.05731 4.21042 4.27587 4.31657 4.40137 4.42849 4.43096 4.57201 4.62769 4.71751 4.74452 4.75340 4.82099 4.83000 4.85067 4.93373 5.00467 5.03498 5.05429 5.08505 5.14597 5.23172 5.26544 5.42292 5.53245 5.61334 5.65976 5.86979 6.35500 6.36523 6.74925 7.11187 7.12201 7.81463 8.34485 9.17800 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021925 B = 0.002825 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.776400 B = 9909.709807 C =10429.618531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.227 4.227 3 C 0.213 3.787 4 N -0.595 5.595 5 C 0.537 3.463 6 O -0.573 6.573 7 C -0.174 4.174 8 H 0.157 0.843 9 C -0.113 4.113 10 C -0.138 4.138 11 C -0.109 4.109 12 C 0.048 3.952 13 O -0.400 6.400 14 C 0.087 3.913 15 C 0.156 3.844 16 C -0.118 4.118 17 C 0.183 3.817 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.143 3.857 28 C -0.122 4.122 29 H 0.237 0.763 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.045 0.955 43 H -0.013 1.013 44 H 0.058 0.942 45 H 0.249 0.751 46 H 0.007 0.993 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 19.125 16.153 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.229 4.229 3 C 0.091 3.909 4 N -0.325 5.325 5 C 0.327 3.673 6 O -0.452 6.452 7 C -0.194 4.194 8 H 0.175 0.825 9 C -0.151 4.151 10 C -0.139 4.139 11 C -0.147 4.147 12 C -0.028 4.028 13 O -0.319 6.319 14 C 0.010 3.990 15 C 0.053 3.947 16 C -0.158 4.158 17 C 0.057 3.943 18 N -0.331 5.331 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.187 1.187 25 H -0.217 1.217 26 H -0.221 1.221 27 C 0.017 3.983 28 C -0.162 4.162 29 H 0.254 0.746 30 H 0.126 0.874 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.158 0.842 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.005 0.995 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.025 0.975 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.195 19.329 15.549 24.807 hybrid contribution -0.844 -1.470 -0.986 1.961 sum -1.039 17.859 14.563 23.067 Atomic orbital electron populations 1.25602 0.96801 1.00070 0.97895 1.23770 0.95464 1.01365 1.02271 1.18701 0.83742 1.04317 0.84102 1.48116 1.64473 1.05810 1.14106 1.20318 0.75899 0.82993 0.88046 1.90673 1.47470 1.81268 1.25824 1.22313 1.07964 0.89256 0.99883 0.82520 1.23039 0.89395 0.97948 1.04669 1.22235 0.99878 0.94105 0.97692 1.22483 1.00935 0.96164 0.95069 1.23711 1.00020 0.95726 0.83311 1.88885 1.51090 1.70520 1.21420 1.22670 0.92952 0.90661 0.92686 1.20803 0.95404 0.87544 0.90987 1.22197 0.96281 0.97261 1.00058 1.20491 0.91981 0.90160 0.91717 1.44342 1.08444 1.02338 1.78010 1.19585 1.21870 0.83407 1.14130 0.90968 1.25845 1.02325 1.01712 0.94938 1.70214 1.35200 1.39062 1.13922 0.85191 0.77585 0.79886 0.77696 1.18682 1.21741 1.22122 1.21009 0.88059 0.94542 0.94690 1.22188 0.98203 0.96345 0.99463 0.74631 0.87373 0.84753 0.89508 0.84160 0.91597 0.91158 0.90588 0.88469 0.89437 0.88267 0.91509 0.91880 0.93606 0.99463 0.92365 0.94156 0.97512 0.91580 0.90411 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.84 19.25 74.32 1.43 -2.41 16 2 C -0.23 -5.07 12.07 31.13 0.38 -4.70 16 3 C 0.21 4.25 5.18 84.57 0.44 4.69 16 4 N -0.60 -16.14 2.37 -808.16 -1.91 -18.05 16 5 C 0.54 14.95 7.45 87.66 0.65 15.60 16 6 O -0.57 -20.64 13.11 -3.01 -0.04 -20.68 16 7 C -0.17 -3.16 5.19 -11.76 -0.06 -3.22 16 8 H 0.16 1.81 6.43 -2.39 -0.02 1.79 16 9 C -0.11 -1.74 10.01 30.37 0.30 -1.43 16 10 C -0.14 -2.49 2.44 -52.29 -0.13 -2.62 16 11 C -0.11 -2.47 5.16 31.69 0.16 -2.31 16 12 C 0.05 0.89 7.73 72.73 0.56 1.45 16 13 O -0.40 -8.34 11.53 -148.98 -1.72 -10.05 16 14 C 0.09 1.30 7.50 72.09 0.54 1.84 16 15 C 0.16 5.43 2.48 45.02 0.11 5.54 16 16 C -0.12 -4.65 4.73 30.67 0.15 -4.50 16 17 C 0.18 9.17 5.31 86.36 0.46 9.63 16 18 N -0.61 -30.75 2.99 -699.08 -2.09 -32.84 16 19 C -0.26 -14.21 9.59 84.03 0.81 -13.40 16 20 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 21 C -0.05 -2.97 4.91 84.86 0.42 -2.56 16 22 N -0.94 -56.33 11.19 21.65 0.24 -56.08 16 23 Si 0.97 44.72 29.59 68.60 2.03 46.75 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 27 C 0.14 5.95 6.51 86.36 0.56 6.51 16 28 C -0.12 -4.01 5.31 30.67 0.16 -3.85 16 29 H 0.24 3.37 7.80 -4.41 -0.03 3.34 16 30 H 0.11 2.14 6.45 -2.39 -0.02 2.12 16 31 H 0.13 1.63 5.99 -2.39 -0.01 1.62 16 32 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.89 6.89 -2.39 -0.02 1.87 16 35 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 2.76 6.90 -2.39 -0.02 2.74 16 41 H 0.06 2.43 7.02 -2.39 -0.02 2.42 16 42 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H 0.06 3.28 6.03 -2.39 -0.01 3.26 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 46 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.07 2.61 7.94 -2.38 -0.02 2.59 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.07 2.29 6.72 -2.38 -0.02 2.28 16 Total: -1.00 -72.94 386.86 4.38 -68.56 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.93 Total: 18.14 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.94 Total: 4.27 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.77 Total: -106.98 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.76 Total: -30.73 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.94 4.38 -68.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.049 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds