Wall clock time and date at job start Tue Mar 31 2020 16:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47347 * 15.80277 * 3 2 1 5 5 C 1.34774 * 119.99878 * 269.99620 * 4 3 2 6 6 O 1.21279 * 120.00181 * 179.97438 * 5 4 3 7 7 C 1.50707 * 120.00167 * 0.02562 * 5 4 3 8 8 H 1.08996 * 115.56399 * 28.49127 * 7 5 4 9 9 C 1.53186 * 117.52291 * 174.26696 * 7 5 4 10 10 C 1.52109 * 59.76610 * 107.42046 * 9 7 5 11 11 C 1.53710 * 121.73555 * 111.09842 * 10 9 7 12 12 C 1.54704 * 103.69488 * 143.46893 * 11 10 9 13 13 O 1.44502 * 104.86836 * 23.84487 * 12 11 10 14 14 C 1.44637 * 105.46165 * 320.02273 * 13 12 11 15 15 C 1.46491 * 119.99951 * 89.99988 * 4 3 2 16 16 C 1.53047 * 109.46276 * 60.02483 * 15 4 3 17 17 C 1.53191 * 109.31171 * 178.59905 * 16 15 4 18 18 N 1.46922 * 108.76455 * 54.66108 * 17 16 15 19 19 C 1.36939 * 120.63135 * 126.36308 * 18 17 16 20 20 H 1.07998 * 120.00060 * 333.28938 * 19 18 17 21 21 C 1.38807 * 120.00005 * 153.29621 * 19 18 17 22 22 N 1.31619 * 120.00121 * 342.82514 * 21 19 18 23 23 Si 1.86806 * 120.00115 * 162.82478 * 21 19 18 24 24 H 1.48498 * 109.47125 * 89.99840 * 23 21 19 25 25 H 1.48496 * 109.47090 * 210.00176 * 23 21 19 26 26 H 1.48503 * 109.46613 * 329.99836 * 23 21 19 27 27 C 1.46929 * 118.73850 * 306.37793 * 18 17 16 28 28 C 1.53039 * 109.46081 * 299.97387 * 15 4 3 29 29 H 4.40639 * 5.51382 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47289 * 255.79866 * 3 2 1 31 31 H 1.08999 * 109.46878 * 135.80664 * 3 2 1 32 32 H 1.08997 * 117.52286 * 214.84422 * 9 7 5 33 33 H 1.09002 * 117.51838 * 359.94944 * 9 7 5 34 34 H 1.09000 * 110.58549 * 262.02069 * 11 10 9 35 35 H 1.09002 * 110.58307 * 24.77190 * 11 10 9 36 36 H 1.08997 * 110.35922 * 142.69400 * 12 11 10 37 37 H 1.08997 * 110.35820 * 264.89203 * 12 11 10 38 38 H 1.08996 * 110.42093 * 280.87730 * 14 13 12 39 39 H 1.09003 * 110.41543 * 158.41846 * 14 13 12 40 40 H 1.08999 * 109.46106 * 179.97438 * 15 4 3 41 41 H 1.08997 * 109.49885 * 298.56794 * 16 15 4 42 42 H 1.09004 * 109.49104 * 58.66208 * 16 15 4 43 43 H 1.08997 * 109.59952 * 294.86827 * 17 16 15 44 44 H 1.09008 * 109.69974 * 174.50574 * 17 16 15 45 45 H 0.97001 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.58416 * 293.82449 * 27 18 17 47 47 H 1.08997 * 109.58811 * 173.39830 * 27 18 17 48 48 H 1.09007 * 109.49471 * 301.33488 * 28 15 4 49 49 H 1.08990 * 109.50234 * 61.43567 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3281 -0.3761 5 6 3.3601 -2.2571 0.5739 6 8 3.7645 -3.3573 0.2626 7 6 3.1083 -1.9293 2.0232 8 1 2.3376 -1.1813 2.2092 9 6 3.2532 -3.0646 3.0413 10 6 4.2994 -1.9628 2.9686 11 6 4.4660 -0.9305 4.0952 12 6 5.9937 -0.6933 4.1517 13 8 6.4737 -1.0534 2.8371 14 6 5.7254 -2.2334 2.4633 15 6 3.3793 -1.6470 -1.7849 16 6 4.4342 -0.6920 -2.3484 17 6 4.7125 -1.0507 -3.8114 18 7 3.4416 -1.0483 -4.5486 19 6 3.2968 -0.3011 -5.6870 20 1 3.8941 0.5873 -5.8295 21 6 2.3821 -0.6855 -6.6578 22 7 1.9049 -1.9121 -6.6635 23 14 1.8284 0.5382 -7.9561 24 1 2.7334 0.4572 -9.1306 25 1 0.4407 0.2189 -8.3774 26 1 1.8709 1.9113 -7.3921 27 6 2.3289 -1.8626 -4.0410 28 6 2.0776 -1.4950 -2.5752 29 1 -1.0498 -0.0004 0.0001 30 1 3.0093 0.2529 0.9963 31 1 3.0090 0.7376 -0.7164 32 1 2.5784 -3.0627 3.8973 33 1 3.5299 -4.0485 2.6625 34 1 3.9437 -0.0062 3.8484 35 1 4.1034 -1.3334 5.0409 36 1 6.2073 0.3552 4.3593 37 1 6.4485 -1.3298 4.9107 38 1 6.1399 -3.1165 2.9494 39 1 5.7277 -2.3579 1.3804 40 1 3.7374 -2.6731 -1.8682 41 1 4.0668 0.3324 -2.2883 42 1 5.3537 -0.7837 -1.7702 43 1 5.1644 -2.0411 -3.8654 44 1 5.3893 -0.3159 -4.2476 45 1 1.2660 -2.1807 -7.3421 46 1 2.5865 -2.9193 -4.1138 47 1 1.4321 -1.6618 -4.6270 48 1 1.3195 -2.1583 -2.1587 49 1 1.7326 -0.4630 -2.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733373738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:56 Heat of formation + Delta-G solvation = 31.921218 kcal Electronic energy + Delta-G solvation = -29758.859842 eV Core-core repulsion = 25882.360800 eV Total energy + Delta-G solvation = -3876.499042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87066 -39.37105 -37.57858 -35.90634 -35.64016 -33.09137 -32.08542 -30.70762 -30.22789 -29.57082 -27.63580 -27.14824 -25.60359 -23.91750 -23.11750 -22.18110 -21.62174 -20.19260 -19.41672 -18.99317 -17.88954 -17.26116 -16.88111 -16.50195 -16.27582 -15.79500 -15.37125 -15.05323 -14.77697 -14.26861 -13.83899 -13.79801 -13.68406 -13.46075 -13.24084 -13.17437 -12.98298 -12.72335 -12.46228 -12.33474 -12.28581 -11.80831 -11.48233 -11.28541 -11.18831 -10.95927 -10.72434 -10.69712 -10.51101 -10.41770 -10.35977 -10.15395 -10.14276 -10.04232 -9.96769 -9.75352 -9.67253 -9.45502 -8.61181 -8.38290 -6.69018 -5.77752 -3.19253 2.34581 2.55793 2.84619 3.28132 3.38016 3.44900 3.47008 3.47981 3.78053 4.04864 4.31191 4.36803 4.49124 4.50335 4.56431 4.70130 4.82450 5.10033 5.15376 5.16612 5.31210 5.35810 5.37007 5.38504 5.41921 5.47507 5.51492 5.53319 5.58710 5.62605 5.68805 5.82445 5.86949 5.93506 6.09484 6.23562 6.33112 6.50276 6.50696 6.59359 6.64936 6.78596 6.88327 6.95873 7.37025 7.48284 7.62166 7.68503 7.79981 8.23319 8.45187 9.21672 9.85413 10.41454 11.30813 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.003037 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.183761 B = 9218.250288 C = 9621.158396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.204 4.204 3 C 0.217 3.783 4 N -0.595 5.595 5 C 0.545 3.455 6 O -0.537 6.537 7 C -0.174 4.174 8 H 0.124 0.876 9 C -0.127 4.127 10 C -0.135 4.135 11 C -0.120 4.120 12 C 0.046 3.954 13 O -0.370 6.370 14 C 0.079 3.921 15 C 0.145 3.855 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.173 3.827 28 C -0.142 4.142 29 H 0.216 0.784 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.254 0.746 46 H 0.019 0.981 47 H 0.093 0.907 48 H 0.048 0.952 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.771 2.912 23.959 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C 0.094 3.906 4 N -0.325 5.325 5 C 0.334 3.666 6 O -0.414 6.414 7 C -0.195 4.195 8 H 0.142 0.858 9 C -0.164 4.164 10 C -0.136 4.136 11 C -0.158 4.158 12 C -0.031 4.031 13 O -0.289 6.289 14 C 0.002 3.998 15 C 0.043 3.957 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.047 3.953 28 C -0.182 4.182 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.111 0.889 48 H 0.067 0.933 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.084 2.364 23.505 23.715 hybrid contribution -1.028 0.616 -0.595 1.338 sum 1.055 2.980 22.910 23.127 Atomic orbital electron populations 1.24901 0.95889 0.98811 1.00793 1.23529 0.94891 1.01519 1.00581 1.18390 0.83737 0.86096 1.02365 1.48160 1.64266 1.12277 1.07837 1.19544 0.76909 0.84112 0.86080 1.90690 1.46166 1.21980 1.82606 1.22384 1.02076 1.04737 0.90282 0.85789 1.22943 0.99743 0.94509 0.99192 1.22170 0.92039 1.00985 0.98391 1.22458 0.97502 0.98417 0.97400 1.23424 0.92348 1.01306 0.86041 1.89216 1.61849 1.45071 1.32754 1.22864 0.86908 0.88382 1.01596 1.21274 0.96779 1.00669 0.76947 1.22395 0.97331 0.99098 0.99072 1.20854 0.89520 0.98359 0.89160 1.44106 1.06950 1.53783 1.26666 1.19179 1.21206 1.02953 0.94747 0.91601 1.25017 1.01758 0.95660 0.97300 1.70029 1.33605 1.15500 1.35605 0.86311 0.77935 0.80970 0.81656 1.21404 1.21594 1.20519 1.20798 0.93508 0.92835 0.88195 1.22544 0.95080 1.01210 0.99335 0.76753 0.88452 0.87498 0.87604 0.86912 0.90101 0.89822 0.88939 0.92130 0.91225 0.88356 0.88503 0.92073 0.92662 0.96185 0.92376 0.93623 0.96305 0.88896 0.93325 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.20 -2.66 11.75 -37.12 -0.44 -3.10 16 3 C 0.22 2.68 5.00 -6.83 -0.03 2.65 16 4 N -0.60 -8.95 2.37 -169.37 -0.40 -9.35 16 5 C 0.55 8.21 6.31 -10.98 -0.07 8.14 16 6 O -0.54 -9.82 15.01 5.56 0.08 -9.74 16 7 C -0.17 -1.92 4.86 -92.13 -0.45 -2.37 16 8 H 0.12 1.21 6.70 -51.93 -0.35 0.86 16 9 C -0.13 -1.19 9.82 -27.09 -0.27 -1.46 16 10 C -0.13 -1.29 2.50 -154.69 -0.39 -1.68 16 11 C -0.12 -0.85 6.88 -25.47 -0.18 -1.03 16 12 C 0.05 0.36 7.65 38.05 0.29 0.65 16 13 O -0.37 -4.37 11.65 -35.23 -0.41 -4.78 16 14 C 0.08 0.90 7.25 37.51 0.27 1.17 16 15 C 0.14 2.61 2.48 -67.89 -0.17 2.44 16 16 C -0.14 -2.45 5.31 -26.61 -0.14 -2.59 16 17 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 18 N -0.59 -14.89 3.00 -172.32 -0.52 -15.41 16 19 C -0.25 -6.89 9.60 -15.06 -0.14 -7.03 16 20 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 21 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 22 N -0.90 -26.35 11.10 55.49 0.62 -25.73 16 23 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.17 4.21 5.32 -3.71 -0.02 4.19 16 28 C -0.14 -2.82 4.73 -26.61 -0.13 -2.94 16 29 H 0.22 1.90 7.80 -54.10 -0.42 1.48 16 30 H 0.10 0.95 6.53 -51.93 -0.34 0.61 16 31 H 0.11 1.33 6.46 -51.93 -0.34 0.99 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.21 7.69 -51.93 -0.40 0.82 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 1.35 6.48 -51.93 -0.34 1.02 16 40 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 41 H 0.06 1.05 6.72 -51.93 -0.35 0.70 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.19 7.93 -51.92 -0.41 0.78 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 2.52 5.95 -51.93 -0.31 2.21 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.06 1.18 7.02 -51.93 -0.36 0.81 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -32.43 387.99 -8.95 -41.39 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.75 Total: 2.70 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.39 Total: -1.58 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.30 Total: -50.49 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.33 Total: -14.52 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.43 -8.95 -41.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.307 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds