Wall clock time and date at job start Tue Mar 31 2020 16:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47347 * 15.80277 * 3 2 1 5 5 C 1.34774 * 119.99878 * 269.99620 * 4 3 2 6 6 O 1.21279 * 120.00181 * 179.97438 * 5 4 3 7 7 C 1.50707 * 120.00167 * 0.02562 * 5 4 3 8 8 H 1.08996 * 115.56399 * 28.49127 * 7 5 4 9 9 C 1.53186 * 117.52291 * 174.26696 * 7 5 4 10 10 C 1.52109 * 59.76610 * 107.42046 * 9 7 5 11 11 C 1.53710 * 121.73555 * 111.09842 * 10 9 7 12 12 C 1.54704 * 103.69488 * 143.46893 * 11 10 9 13 13 O 1.44502 * 104.86836 * 23.84487 * 12 11 10 14 14 C 1.44637 * 105.46165 * 320.02273 * 13 12 11 15 15 C 1.46491 * 119.99951 * 89.99988 * 4 3 2 16 16 C 1.53047 * 109.46276 * 60.02483 * 15 4 3 17 17 C 1.53191 * 109.31171 * 178.59905 * 16 15 4 18 18 N 1.46922 * 108.76455 * 54.66108 * 17 16 15 19 19 C 1.36939 * 120.63135 * 126.36308 * 18 17 16 20 20 H 1.07998 * 120.00060 * 333.28938 * 19 18 17 21 21 C 1.38807 * 120.00005 * 153.29621 * 19 18 17 22 22 N 1.31619 * 120.00121 * 342.82514 * 21 19 18 23 23 Si 1.86806 * 120.00115 * 162.82478 * 21 19 18 24 24 H 1.48498 * 109.47125 * 89.99840 * 23 21 19 25 25 H 1.48496 * 109.47090 * 210.00176 * 23 21 19 26 26 H 1.48503 * 109.46613 * 329.99836 * 23 21 19 27 27 C 1.46929 * 118.73850 * 306.37793 * 18 17 16 28 28 C 1.53039 * 109.46081 * 299.97387 * 15 4 3 29 29 H 4.40639 * 5.51382 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.47289 * 255.79866 * 3 2 1 31 31 H 1.08999 * 109.46878 * 135.80664 * 3 2 1 32 32 H 1.08997 * 117.52286 * 214.84422 * 9 7 5 33 33 H 1.09002 * 117.51838 * 359.94944 * 9 7 5 34 34 H 1.09000 * 110.58549 * 262.02069 * 11 10 9 35 35 H 1.09002 * 110.58307 * 24.77190 * 11 10 9 36 36 H 1.08997 * 110.35922 * 142.69400 * 12 11 10 37 37 H 1.08997 * 110.35820 * 264.89203 * 12 11 10 38 38 H 1.08996 * 110.42093 * 280.87730 * 14 13 12 39 39 H 1.09003 * 110.41543 * 158.41846 * 14 13 12 40 40 H 1.08999 * 109.46106 * 179.97438 * 15 4 3 41 41 H 1.08997 * 109.49885 * 298.56794 * 16 15 4 42 42 H 1.09004 * 109.49104 * 58.66208 * 16 15 4 43 43 H 1.08997 * 109.59952 * 294.86827 * 17 16 15 44 44 H 1.09008 * 109.69974 * 174.50574 * 17 16 15 45 45 H 0.97001 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.58416 * 293.82449 * 27 18 17 47 47 H 1.08997 * 109.58811 * 173.39830 * 27 18 17 48 48 H 1.09007 * 109.49471 * 301.33488 * 28 15 4 49 49 H 1.08990 * 109.50234 * 61.43567 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3281 -0.3761 5 6 3.3601 -2.2571 0.5739 6 8 3.7645 -3.3573 0.2626 7 6 3.1083 -1.9293 2.0232 8 1 2.3376 -1.1813 2.2092 9 6 3.2532 -3.0646 3.0413 10 6 4.2994 -1.9628 2.9686 11 6 4.4660 -0.9305 4.0952 12 6 5.9937 -0.6933 4.1517 13 8 6.4737 -1.0534 2.8371 14 6 5.7254 -2.2334 2.4633 15 6 3.3793 -1.6470 -1.7849 16 6 4.4342 -0.6920 -2.3484 17 6 4.7125 -1.0507 -3.8114 18 7 3.4416 -1.0483 -4.5486 19 6 3.2968 -0.3011 -5.6870 20 1 3.8941 0.5873 -5.8295 21 6 2.3821 -0.6855 -6.6578 22 7 1.9049 -1.9121 -6.6635 23 14 1.8284 0.5382 -7.9561 24 1 2.7334 0.4572 -9.1306 25 1 0.4407 0.2189 -8.3774 26 1 1.8709 1.9113 -7.3921 27 6 2.3289 -1.8626 -4.0410 28 6 2.0776 -1.4950 -2.5752 29 1 -1.0498 -0.0004 0.0001 30 1 3.0093 0.2529 0.9963 31 1 3.0090 0.7376 -0.7164 32 1 2.5784 -3.0627 3.8973 33 1 3.5299 -4.0485 2.6625 34 1 3.9437 -0.0062 3.8484 35 1 4.1034 -1.3334 5.0409 36 1 6.2073 0.3552 4.3593 37 1 6.4485 -1.3298 4.9107 38 1 6.1399 -3.1165 2.9494 39 1 5.7277 -2.3579 1.3804 40 1 3.7374 -2.6731 -1.8682 41 1 4.0668 0.3324 -2.2883 42 1 5.3537 -0.7837 -1.7702 43 1 5.1644 -2.0411 -3.8654 44 1 5.3893 -0.3159 -4.2476 45 1 1.2660 -2.1807 -7.3421 46 1 2.5865 -2.9193 -4.1138 47 1 1.4321 -1.6618 -4.6270 48 1 1.3195 -2.1583 -2.1587 49 1 1.7326 -0.4630 -2.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733373738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:55 Heat of formation + Delta-G solvation = 12.910980 kcal Electronic energy + Delta-G solvation = -29759.684188 eV Core-core repulsion = 25882.360800 eV Total energy + Delta-G solvation = -3877.323388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.88204 -40.41084 -39.02908 -37.12079 -36.76158 -34.66028 -33.46060 -32.04382 -31.44581 -31.18087 -28.48300 -28.24354 -27.24405 -25.33023 -23.92681 -23.73897 -23.17394 -21.09202 -20.85475 -20.16253 -18.99417 -18.66229 -18.32662 -17.51904 -17.26444 -16.84932 -16.61084 -16.20279 -16.05595 -15.70751 -15.42750 -15.14793 -14.87777 -14.68718 -14.56268 -14.34625 -14.27461 -14.02436 -13.79309 -13.30340 -13.22985 -13.19922 -13.05515 -12.69769 -12.55393 -12.42121 -12.27495 -12.05016 -11.96820 -11.93782 -11.58071 -11.49737 -11.42146 -11.31803 -11.19746 -11.02853 -10.74481 -10.67872 -10.58403 -9.84691 -8.75435 -7.88910 -5.34179 1.28094 1.46370 1.47889 1.49520 1.58199 1.90385 2.26794 2.50564 2.65356 3.01996 3.25618 3.27222 3.48187 3.50997 3.61659 3.72094 3.74774 3.89302 3.96128 4.03536 4.18116 4.25377 4.29038 4.41426 4.43135 4.47426 4.48988 4.57086 4.61658 4.72548 4.73780 4.80051 4.82843 4.87388 4.96747 4.98732 5.01431 5.05533 5.06075 5.11390 5.13749 5.24837 5.41704 5.50588 5.60983 5.66333 5.80778 6.31264 6.36131 6.69065 7.06094 7.11292 7.81593 8.34315 9.18291 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.003037 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.183761 B = 9218.250288 C = 9621.158396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.235 4.235 3 C 0.215 3.785 4 N -0.595 5.595 5 C 0.539 3.461 6 O -0.579 6.579 7 C -0.182 4.182 8 H 0.145 0.855 9 C -0.118 4.118 10 C -0.125 4.125 11 C -0.111 4.111 12 C 0.037 3.963 13 O -0.397 6.397 14 C 0.076 3.924 15 C 0.155 3.845 16 C -0.122 4.122 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.182 3.818 28 C -0.119 4.119 29 H 0.241 0.759 30 H 0.129 0.871 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.008 0.992 44 H 0.066 0.934 45 H 0.250 0.750 46 H -0.012 1.012 47 H 0.062 0.938 48 H 0.047 0.953 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 5.237 26.899 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.236 4.236 3 C 0.094 3.906 4 N -0.325 5.325 5 C 0.330 3.670 6 O -0.460 6.460 7 C -0.202 4.202 8 H 0.163 0.837 9 C -0.155 4.155 10 C -0.126 4.126 11 C -0.148 4.148 12 C -0.039 4.039 13 O -0.317 6.317 14 C -0.001 4.001 15 C 0.052 3.948 16 C -0.162 4.162 17 C 0.018 3.982 18 N -0.331 5.331 19 C -0.392 4.392 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.797 3.203 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.192 1.192 27 C 0.055 3.945 28 C -0.159 4.159 29 H 0.257 0.743 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.158 0.842 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.026 0.974 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.006 0.994 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.594 4.726 26.489 26.955 hybrid contribution -0.809 -0.165 -1.493 1.706 sum 0.785 4.561 24.997 25.422 Atomic orbital electron populations 1.25661 0.96795 0.97464 0.99730 1.23780 0.95444 1.02697 1.01655 1.18616 0.83746 0.84207 1.04029 1.48076 1.64406 1.13671 1.06297 1.20298 0.75697 0.83299 0.87740 1.90669 1.47978 1.23805 1.83515 1.22364 1.03793 1.06564 0.87516 0.83692 1.23057 1.00015 0.93199 0.99244 1.22205 0.90397 1.01669 0.98309 1.22511 0.96927 0.98095 0.97313 1.23712 0.93070 1.02575 0.84521 1.89185 1.62472 1.45025 1.34982 1.22780 0.88577 0.88901 0.99823 1.20833 0.95566 0.99335 0.79090 1.22179 0.98084 0.99360 0.96529 1.21000 0.88114 0.98034 0.91088 1.44342 1.08428 1.53593 1.26775 1.19559 1.21056 1.03255 0.95300 0.90971 1.25828 1.02154 0.97204 0.99638 1.70202 1.34321 1.17380 1.36516 0.85245 0.76925 0.79146 0.78942 1.21192 1.21986 1.19189 1.20529 0.92183 0.91158 0.90588 1.22211 0.96165 1.01039 0.96452 0.74269 0.85373 0.87466 0.84245 0.88891 0.88849 0.87185 0.87368 0.90872 0.90617 0.91620 0.91415 0.90833 0.90764 0.97396 0.91571 0.94112 0.99397 0.91941 0.93455 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 19.25 74.32 1.43 -2.43 16 2 C -0.23 -5.61 11.75 31.13 0.37 -5.24 16 3 C 0.22 4.87 5.00 84.57 0.42 5.29 16 4 N -0.60 -17.51 2.37 -808.16 -1.91 -19.43 16 5 C 0.54 16.08 6.31 87.66 0.55 16.63 16 6 O -0.58 -21.97 15.01 -3.03 -0.05 -22.02 16 7 C -0.18 -3.62 4.86 -11.77 -0.06 -3.67 16 8 H 0.15 2.28 6.70 -2.39 -0.02 2.27 16 9 C -0.12 -1.94 9.82 30.36 0.30 -1.64 16 10 C -0.12 -2.09 2.50 -52.30 -0.13 -2.22 16 11 C -0.11 -1.11 6.88 31.41 0.22 -0.89 16 12 C 0.04 0.47 7.65 72.56 0.56 1.02 16 13 O -0.40 -8.83 11.65 -148.98 -1.74 -10.56 16 14 C 0.08 1.68 7.25 72.21 0.52 2.20 16 15 C 0.15 5.67 2.48 45.02 0.11 5.78 16 16 C -0.12 -4.24 5.31 30.67 0.16 -4.08 16 17 C 0.14 6.17 6.52 86.36 0.56 6.73 16 18 N -0.61 -31.35 3.00 -699.09 -2.10 -33.45 16 19 C -0.26 -14.52 9.60 84.03 0.81 -13.71 16 20 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 21 C -0.05 -3.01 4.93 84.86 0.42 -2.59 16 22 N -0.94 -56.68 11.10 21.65 0.24 -56.44 16 23 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.18 9.28 5.32 86.36 0.46 9.74 16 28 C -0.12 -4.83 4.73 30.67 0.15 -4.68 16 29 H 0.24 3.53 7.80 -4.43 -0.03 3.49 16 30 H 0.13 2.08 6.53 -2.39 -0.02 2.07 16 31 H 0.11 2.42 6.46 -2.39 -0.02 2.40 16 32 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.94 7.69 -2.39 -0.02 1.93 16 34 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.07 1.87 6.48 -2.39 -0.02 1.86 16 40 H 0.07 2.90 6.90 -2.39 -0.02 2.89 16 41 H 0.07 2.41 6.72 -2.39 -0.02 2.39 16 42 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.07 2.70 7.93 -2.38 -0.02 2.68 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 47 H 0.06 3.56 5.95 -2.39 -0.01 3.54 16 48 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.06 2.50 7.02 -2.39 -0.02 2.49 16 Total: -1.00 -73.91 387.99 4.26 -69.65 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.93 Total: 18.88 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.84 Total: 6.24 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.77 Total: -109.32 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.78 Total: -32.58 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.91 4.26 -69.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733373738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds