Wall clock time and date at job start Tue Mar 31 2020 16:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47386 * 2 1 4 4 H 1.09003 * 109.46796 * 54.99878 * 3 2 1 5 5 O 1.42900 * 109.47196 * 295.00757 * 3 2 1 6 6 C 1.35895 * 117.00334 * 99.35687 * 5 3 2 7 7 C 1.38748 * 120.05730 * 354.37705 * 6 5 3 8 8 C 1.38123 * 119.94998 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05075 * 359.72705 * 8 7 6 10 10 C 1.38244 * 120.11218 * 0.54578 * 9 8 7 11 11 C 1.50703 * 119.97334 * 179.72404 * 10 9 8 12 12 C 1.38166 * 120.05750 * 359.45761 * 10 9 8 13 13 C 1.50703 * 109.47543 * 175.00231 * 3 2 1 14 14 O 1.21273 * 119.99678 * 119.99975 * 13 3 2 15 15 N 1.34777 * 119.99614 * 300.00312 * 13 3 2 16 16 C 1.46496 * 119.99689 * 179.97438 * 15 13 3 17 17 H 1.09005 * 112.85033 * 25.33161 * 16 15 13 18 18 C 1.53781 * 113.61810 * 156.52893 * 16 15 13 19 19 C 1.53778 * 87.08430 * 139.98113 * 18 16 15 20 20 H 1.09000 * 113.61411 * 219.93761 * 19 18 16 21 21 N 1.46497 * 113.61299 * 89.11554 * 19 18 16 22 22 C 1.36941 * 119.99835 * 155.00109 * 21 19 18 23 23 H 1.08002 * 119.99714 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00017 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99712 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99850 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.46749 * 90.00468 * 26 24 22 28 28 H 1.48505 * 109.46844 * 210.00359 * 26 24 22 29 29 H 1.48501 * 109.47015 * 330.00351 * 26 24 22 30 30 C 1.53784 * 113.61661 * 254.14107 * 16 15 13 31 31 H 1.09001 * 109.46760 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46307 * 299.99476 * 1 2 3 33 33 H 1.08995 * 109.47205 * 59.99502 * 1 2 3 34 34 H 1.09001 * 109.47198 * 240.00327 * 2 1 3 35 35 H 1.08995 * 109.47659 * 120.00778 * 2 1 3 36 36 H 1.08008 * 120.02891 * 0.04779 * 7 6 5 37 37 H 1.07998 * 119.97969 * 179.97438 * 8 7 6 38 38 H 1.08004 * 119.94647 * 180.30048 * 9 8 7 39 39 H 1.09004 * 109.47367 * 269.73080 * 11 10 9 40 40 H 1.08999 * 109.46952 * 29.73111 * 11 10 9 41 41 H 1.09004 * 109.46700 * 149.72980 * 11 10 9 42 42 H 1.07994 * 120.03060 * 180.29648 * 12 10 9 43 43 H 0.96998 * 120.00012 * 359.97438 * 15 13 3 44 44 H 1.08998 * 113.61607 * 254.53661 * 18 16 15 45 45 H 1.09010 * 113.60895 * 25.43131 * 18 16 15 46 46 H 0.96997 * 120.00208 * 335.00813 * 21 19 18 47 47 H 0.97006 * 119.99417 * 179.97438 * 25 24 22 48 48 H 1.08996 * 113.61078 * 334.56306 * 30 16 15 49 49 H 1.08998 * 113.61860 * 105.46722 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5659 2.8840 -1.1836 7 6 -0.1991 2.9624 -0.0288 8 6 -1.3129 3.7784 0.0066 9 6 -1.6626 4.5213 -1.1062 10 6 -0.9054 4.4407 -2.2599 11 6 -1.2929 5.2470 -3.4727 12 6 0.2097 3.6259 -2.3004 13 6 3.5420 1.4443 0.1238 14 8 4.2216 1.9435 -0.7478 15 7 4.1298 0.8910 1.2031 16 6 5.5899 0.8923 1.3231 17 1 6.0598 1.7018 0.7645 18 6 6.0889 0.7736 2.7728 19 6 7.1837 -0.1636 2.2363 20 1 7.3850 -1.0162 2.8848 21 7 8.4023 0.5352 1.8204 22 6 9.6018 -0.1255 1.8131 23 1 9.6494 -1.1615 2.1143 24 6 10.7565 0.5368 1.4195 25 7 11.9093 -0.0984 1.4120 26 14 10.6741 2.3290 0.8992 27 1 10.8773 3.1986 2.0855 28 1 11.7354 2.6027 -0.1029 29 1 9.3443 2.6101 0.3012 30 6 6.2300 -0.4829 1.0706 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8898 36 1 0.0764 2.3860 0.8422 37 1 -1.9089 3.8394 0.9051 38 1 -2.5311 5.1626 -1.0751 39 1 -1.9680 4.6620 -4.0975 40 1 -1.7927 6.1623 -3.1559 41 1 -0.3984 5.4997 -4.0420 42 1 0.8037 3.5669 -3.2003 43 1 3.5862 0.4920 1.9003 44 1 6.4750 1.7082 3.1797 45 1 5.3807 0.2812 3.4394 46 1 8.3595 1.4658 1.5503 47 1 12.7162 0.3643 1.1367 48 1 5.5606 -1.3195 1.2709 49 1 6.7299 -0.5613 0.1051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752671023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:49 Heat of formation + Delta-G solvation = -14.610876 kcal Electronic energy + Delta-G solvation = -28119.233987 eV Core-core repulsion = 24240.717162 eV Total energy + Delta-G solvation = -3878.516825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05019 -39.80602 -38.48928 -37.51653 -34.55761 -33.86408 -32.87190 -32.52644 -30.55334 -30.34774 -27.86255 -27.33290 -25.27710 -24.44522 -22.96266 -22.81483 -22.64407 -21.50695 -20.19922 -19.06763 -18.55242 -17.69476 -17.37861 -16.44871 -16.24667 -15.92251 -15.76449 -14.95569 -14.80472 -14.67235 -14.45984 -14.21776 -14.06974 -13.85656 -13.53531 -13.17949 -13.13175 -12.76040 -12.67506 -12.47683 -12.39174 -12.23741 -12.17874 -12.12202 -12.03805 -11.91346 -11.52287 -11.21605 -10.96735 -10.87213 -10.83537 -10.44049 -10.29365 -9.95487 -9.70177 -9.59016 -9.10935 -8.98812 -8.85815 -8.43629 -7.33066 -5.80724 -3.17639 0.98566 1.13982 2.41371 2.54730 3.38110 3.38632 3.42872 3.43861 3.46252 4.24114 4.32745 4.42423 4.49030 4.55125 4.57105 4.70179 4.80348 4.84751 4.93244 4.99636 5.02060 5.03607 5.16081 5.17838 5.23980 5.25447 5.37739 5.38036 5.49185 5.56591 5.64461 5.66181 5.73664 5.75536 5.81600 5.94526 6.01713 6.03024 6.09576 6.18770 6.26559 6.41731 6.47045 6.52423 6.63286 6.84200 7.09939 7.45820 7.95385 8.15977 8.38407 9.15549 9.88061 10.06043 11.37000 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.002278 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.022146 B =12289.345253 C =13195.405254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.064 3.936 4 H 0.103 0.897 5 O -0.280 6.280 6 C 0.138 3.862 7 C -0.220 4.220 8 C -0.076 4.076 9 C -0.162 4.162 10 C -0.047 4.047 11 C -0.116 4.116 12 C -0.152 4.152 13 C 0.508 3.492 14 O -0.515 6.515 15 N -0.713 5.713 16 C 0.123 3.877 17 H 0.110 0.890 18 C -0.164 4.164 19 C 0.177 3.823 20 H 0.078 0.922 21 N -0.729 5.729 22 C -0.249 4.249 23 H 0.093 0.907 24 C 0.008 3.992 25 N -0.930 5.930 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.275 1.275 30 C -0.182 4.182 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.131 0.869 43 H 0.397 0.603 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.363 0.637 47 H 0.261 0.739 48 H 0.074 0.926 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.942 5.369 -1.450 33.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.120 0.880 5 O -0.193 6.193 6 C 0.092 3.908 7 C -0.238 4.238 8 C -0.094 4.094 9 C -0.180 4.180 10 C -0.048 4.048 11 C -0.172 4.172 12 C -0.170 4.170 13 C 0.292 3.708 14 O -0.389 6.389 15 N -0.365 5.365 16 C 0.019 3.981 17 H 0.128 0.872 18 C -0.204 4.204 19 C 0.065 3.935 20 H 0.096 0.904 21 N -0.369 5.369 22 C -0.379 4.379 23 H 0.111 0.889 24 C -0.188 4.188 25 N -0.577 5.577 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.201 1.201 30 C -0.224 4.224 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.149 0.851 43 H 0.231 0.769 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.196 0.804 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -32.059 5.535 -2.252 32.611 hybrid contribution -0.290 1.032 0.132 1.080 sum -32.348 6.568 -2.120 33.076 Atomic orbital electron populations 1.21932 0.94421 1.02574 1.02381 1.21984 0.97349 0.93842 1.04376 1.22439 0.93436 0.95392 0.88302 0.87982 1.86229 1.42365 1.58265 1.32395 1.19055 0.86624 0.90576 0.94495 1.21332 0.98868 1.05272 0.98327 1.20897 0.95634 0.94681 0.98200 1.20935 1.01300 1.02499 0.93283 1.19717 0.93646 0.95670 0.95722 1.20823 1.02219 0.99021 0.95167 1.20333 0.99298 0.99241 0.98168 1.20270 0.89029 0.78781 0.82699 1.90768 1.64855 1.43906 1.39348 1.46024 1.08368 1.59823 1.22283 1.22716 0.77396 1.00006 0.97985 0.87210 1.23918 0.99614 1.01876 0.95019 1.20890 0.84918 0.94292 0.93431 0.90363 1.42551 1.03718 1.11101 1.79575 1.19083 0.83276 0.96966 1.38578 0.88941 1.24677 0.95303 0.97716 1.01142 1.69700 0.98238 1.36139 1.53652 0.86595 0.77323 0.86470 0.78493 1.20959 1.21550 1.20106 1.24321 0.99627 0.95398 1.03071 0.91801 0.92306 0.91968 0.89863 0.89654 0.85106 0.85795 0.86012 0.90844 0.91280 0.91195 0.85092 0.76871 0.90862 0.89778 0.80376 0.92942 0.90747 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.48 37.16 0.32 -0.72 16 2 C -0.14 -1.09 5.59 -26.73 -0.15 -1.24 16 3 C 0.06 0.67 2.54 -27.88 -0.07 0.60 16 4 H 0.10 0.83 5.43 -51.93 -0.28 0.55 16 5 O -0.28 -3.64 9.11 -39.32 -0.36 -4.00 16 6 C 0.14 1.54 5.65 -39.22 -0.22 1.32 16 7 C -0.22 -1.94 7.36 -39.44 -0.29 -2.23 16 8 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 9 C -0.16 -1.27 9.70 -39.56 -0.38 -1.66 16 10 C -0.05 -0.41 5.88 -104.64 -0.62 -1.03 16 11 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 12 C -0.15 -1.61 9.64 -39.43 -0.38 -1.99 16 13 C 0.51 7.13 7.23 -10.98 -0.08 7.05 16 14 O -0.51 -10.00 16.12 -14.35 -0.23 -10.23 16 15 N -0.71 -8.42 5.22 -53.02 -0.28 -8.70 16 16 C 0.12 1.86 4.09 -67.12 -0.27 1.59 16 17 H 0.11 2.03 7.50 -51.93 -0.39 1.64 16 18 C -0.16 -2.31 7.58 -25.92 -0.20 -2.51 16 19 C 0.18 3.23 4.57 -67.03 -0.31 2.92 16 20 H 0.08 1.42 8.10 -51.93 -0.42 0.99 16 21 N -0.73 -17.04 5.11 -52.55 -0.27 -17.30 16 22 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 25 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 26 Si 0.88 22.41 27.74 -169.99 -4.71 17.69 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 30 C -0.18 -2.98 7.69 -25.82 -0.20 -3.18 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 6.73 -51.93 -0.35 -0.04 16 33 H 0.06 0.51 6.53 -51.93 -0.34 0.17 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.50 7.43 -51.93 -0.39 0.11 16 36 H 0.13 0.91 4.28 -52.48 -0.22 0.69 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 41 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.40 3.15 8.07 -40.82 -0.33 2.82 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 0.91 8.11 -51.92 -0.42 0.48 16 46 H 0.36 8.49 5.76 -40.82 -0.24 8.25 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -35.28 393.49 -9.90 -45.18 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.61 Total: 9.24 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.14 Total: -9.41 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.23 Total: -54.42 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.59 Total: -14.22 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.28 -9.90 -45.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752671023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.570 kcal (2) G-P(sol) polarization free energy of solvation -35.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds