Wall clock time and date at job start Tue Mar 31 2020 16:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47386 * 2 1 4 4 H 1.09003 * 109.46796 * 54.99878 * 3 2 1 5 5 O 1.42900 * 109.47196 * 295.00757 * 3 2 1 6 6 C 1.35895 * 117.00334 * 99.35687 * 5 3 2 7 7 C 1.38748 * 120.05730 * 354.37705 * 6 5 3 8 8 C 1.38123 * 119.94998 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05075 * 359.72705 * 8 7 6 10 10 C 1.38244 * 120.11218 * 0.54578 * 9 8 7 11 11 C 1.50703 * 119.97334 * 179.72404 * 10 9 8 12 12 C 1.38166 * 120.05750 * 359.45761 * 10 9 8 13 13 C 1.50703 * 109.47543 * 175.00231 * 3 2 1 14 14 O 1.21273 * 119.99678 * 119.99975 * 13 3 2 15 15 N 1.34777 * 119.99614 * 300.00312 * 13 3 2 16 16 C 1.46496 * 119.99689 * 179.97438 * 15 13 3 17 17 H 1.09005 * 112.85033 * 25.33161 * 16 15 13 18 18 C 1.53781 * 113.61810 * 156.52893 * 16 15 13 19 19 C 1.53778 * 87.08430 * 139.98113 * 18 16 15 20 20 H 1.09000 * 113.61411 * 219.93761 * 19 18 16 21 21 N 1.46497 * 113.61299 * 89.11554 * 19 18 16 22 22 C 1.36941 * 119.99835 * 155.00109 * 21 19 18 23 23 H 1.08002 * 119.99714 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00017 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99712 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99850 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.46749 * 90.00468 * 26 24 22 28 28 H 1.48505 * 109.46844 * 210.00359 * 26 24 22 29 29 H 1.48501 * 109.47015 * 330.00351 * 26 24 22 30 30 C 1.53784 * 113.61661 * 254.14107 * 16 15 13 31 31 H 1.09001 * 109.46760 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46307 * 299.99476 * 1 2 3 33 33 H 1.08995 * 109.47205 * 59.99502 * 1 2 3 34 34 H 1.09001 * 109.47198 * 240.00327 * 2 1 3 35 35 H 1.08995 * 109.47659 * 120.00778 * 2 1 3 36 36 H 1.08008 * 120.02891 * 0.04779 * 7 6 5 37 37 H 1.07998 * 119.97969 * 179.97438 * 8 7 6 38 38 H 1.08004 * 119.94647 * 180.30048 * 9 8 7 39 39 H 1.09004 * 109.47367 * 269.73080 * 11 10 9 40 40 H 1.08999 * 109.46952 * 29.73111 * 11 10 9 41 41 H 1.09004 * 109.46700 * 149.72980 * 11 10 9 42 42 H 1.07994 * 120.03060 * 180.29648 * 12 10 9 43 43 H 0.96998 * 120.00012 * 359.97438 * 15 13 3 44 44 H 1.08998 * 113.61607 * 254.53661 * 18 16 15 45 45 H 1.09010 * 113.60895 * 25.43131 * 18 16 15 46 46 H 0.96997 * 120.00208 * 335.00813 * 21 19 18 47 47 H 0.97006 * 119.99417 * 179.97438 * 25 24 22 48 48 H 1.08996 * 113.61078 * 334.56306 * 30 16 15 49 49 H 1.08998 * 113.61860 * 105.46722 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 0.5659 2.8840 -1.1836 7 6 -0.1991 2.9624 -0.0288 8 6 -1.3129 3.7784 0.0066 9 6 -1.6626 4.5213 -1.1062 10 6 -0.9054 4.4407 -2.2599 11 6 -1.2929 5.2470 -3.4727 12 6 0.2097 3.6259 -2.3004 13 6 3.5420 1.4443 0.1238 14 8 4.2216 1.9435 -0.7478 15 7 4.1298 0.8910 1.2031 16 6 5.5899 0.8923 1.3231 17 1 6.0598 1.7018 0.7645 18 6 6.0889 0.7736 2.7728 19 6 7.1837 -0.1636 2.2363 20 1 7.3850 -1.0162 2.8848 21 7 8.4023 0.5352 1.8204 22 6 9.6018 -0.1255 1.8131 23 1 9.6494 -1.1615 2.1143 24 6 10.7565 0.5368 1.4195 25 7 11.9093 -0.0984 1.4120 26 14 10.6741 2.3290 0.8992 27 1 10.8773 3.1986 2.0855 28 1 11.7354 2.6027 -0.1029 29 1 9.3443 2.6101 0.3012 30 6 6.2300 -0.4829 1.0706 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8898 36 1 0.0764 2.3860 0.8422 37 1 -1.9089 3.8394 0.9051 38 1 -2.5311 5.1626 -1.0751 39 1 -1.9680 4.6620 -4.0975 40 1 -1.7927 6.1623 -3.1559 41 1 -0.3984 5.4997 -4.0420 42 1 0.8037 3.5669 -3.2003 43 1 3.5862 0.4920 1.9003 44 1 6.4750 1.7082 3.1797 45 1 5.3807 0.2812 3.4394 46 1 8.3595 1.4658 1.5503 47 1 12.7162 0.3643 1.1367 48 1 5.5606 -1.3195 1.2709 49 1 6.7299 -0.5613 0.1051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752671023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:48 Heat of formation + Delta-G solvation = -37.632835 kcal Electronic energy + Delta-G solvation = -28120.232294 eV Core-core repulsion = 24240.717162 eV Total energy + Delta-G solvation = -3879.515132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91138 -40.86175 -39.59450 -38.47496 -35.91583 -35.07356 -33.97945 -33.44188 -32.29285 -31.19260 -28.70159 -27.89397 -26.55617 -26.09663 -24.30564 -23.56550 -23.47420 -22.48795 -21.11543 -20.52491 -19.66263 -19.25942 -18.38862 -17.56664 -16.98097 -16.82320 -16.65561 -16.47098 -16.11130 -15.77538 -15.50311 -15.26726 -14.80084 -14.76561 -14.69717 -14.48970 -14.16105 -13.85378 -13.81350 -13.70066 -13.37649 -13.31454 -13.06514 -12.94574 -12.91713 -12.70265 -12.53975 -12.47504 -12.26114 -12.09059 -11.90602 -11.84695 -11.80046 -11.49566 -11.38642 -10.97458 -10.77647 -10.08654 -9.75108 -9.33822 -9.13301 -8.06480 -5.39386 0.35291 0.46759 1.33826 1.36758 1.39951 1.42542 1.61587 2.43476 2.51081 2.78920 3.23474 3.45284 3.46786 3.58864 3.66662 3.69951 3.82250 3.90424 3.92952 4.14554 4.19253 4.22173 4.23717 4.37738 4.40090 4.45178 4.54824 4.71796 4.74745 4.80441 4.82598 4.86460 4.95995 4.96920 5.01147 5.07741 5.09210 5.17960 5.22763 5.25162 5.30146 5.37873 5.48505 5.55806 5.64914 5.76838 5.84492 6.19333 6.34556 6.52791 7.03786 7.16128 7.81287 7.96726 9.14672 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.002278 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.022146 B =12289.345253 C =13195.405254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.070 3.930 4 H 0.132 0.868 5 O -0.314 6.314 6 C 0.114 3.886 7 C -0.220 4.220 8 C -0.075 4.075 9 C -0.165 4.165 10 C -0.054 4.054 11 C -0.115 4.115 12 C -0.181 4.181 13 C 0.503 3.497 14 O -0.579 6.579 15 N -0.690 5.690 16 C 0.126 3.874 17 H 0.072 0.928 18 C -0.134 4.134 19 C 0.152 3.848 20 H 0.081 0.919 21 N -0.739 5.739 22 C -0.229 4.229 23 H 0.066 0.934 24 C -0.061 4.061 25 N -0.980 5.980 26 Si 0.947 3.053 27 H -0.272 1.272 28 H -0.296 1.296 29 H -0.265 1.265 30 C -0.173 4.173 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.422 0.578 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.363 0.637 47 H 0.258 0.742 48 H 0.110 0.890 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.198 6.120 0.887 37.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.010 3.990 4 H 0.149 0.851 5 O -0.227 6.227 6 C 0.069 3.931 7 C -0.238 4.238 8 C -0.093 4.093 9 C -0.183 4.183 10 C -0.055 4.055 11 C -0.172 4.172 12 C -0.200 4.200 13 C 0.290 3.710 14 O -0.458 6.458 15 N -0.343 5.343 16 C 0.021 3.979 17 H 0.090 0.910 18 C -0.173 4.173 19 C 0.041 3.959 20 H 0.099 0.901 21 N -0.379 5.379 22 C -0.360 4.360 23 H 0.084 0.916 24 C -0.253 4.253 25 N -0.630 5.630 26 Si 0.775 3.225 27 H -0.198 1.198 28 H -0.223 1.223 29 H -0.190 1.190 30 C -0.214 4.214 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.169 0.831 37 H 0.173 0.827 38 H 0.164 0.836 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.261 0.739 44 H 0.090 0.910 45 H 0.151 0.849 46 H 0.196 0.804 47 H 0.067 0.933 48 H 0.128 0.872 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -36.421 6.264 0.139 36.956 hybrid contribution 0.917 0.710 -0.597 1.305 sum -35.503 6.974 -0.458 36.185 Atomic orbital electron populations 1.21901 0.93125 1.03362 1.02421 1.22020 0.98372 0.91934 1.04719 1.22564 0.90501 0.97211 0.88694 0.85105 1.86185 1.43535 1.59099 1.33890 1.19303 0.86916 0.91160 0.95720 1.21546 0.98786 1.05534 0.97915 1.21313 0.95220 0.93546 0.99207 1.21312 1.01650 1.02472 0.92822 1.20019 0.93033 0.95287 0.97116 1.20872 1.02344 0.99501 0.94451 1.20487 1.00539 1.00816 0.98111 1.21048 0.90631 0.77423 0.81936 1.90744 1.66567 1.46770 1.41711 1.45724 1.07117 1.59068 1.22432 1.22333 0.79165 0.97878 0.98521 0.90994 1.23758 0.97978 1.00928 0.94614 1.21262 0.84331 0.95530 0.94728 0.90116 1.42586 1.04026 1.11201 1.80129 1.19099 0.85021 0.95933 1.35945 0.91606 1.25423 0.95135 1.02094 1.02632 1.69860 0.98995 1.37979 1.56172 0.85532 0.77295 0.81520 0.78155 1.19779 1.22316 1.19044 1.24226 0.99514 0.97566 1.00137 0.90633 0.90209 0.93946 0.92035 0.86735 0.83113 0.82718 0.83560 0.89886 0.89655 0.91707 0.86623 0.73913 0.91011 0.84854 0.80428 0.93317 0.87169 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.48 71.98 0.61 -0.96 16 2 C -0.13 -1.78 5.59 30.59 0.17 -1.61 16 3 C 0.07 1.34 2.54 29.85 0.08 1.42 16 4 H 0.13 1.68 5.43 -2.39 -0.01 1.67 16 5 O -0.31 -8.29 9.11 -73.33 -0.67 -8.96 16 6 C 0.11 2.52 5.65 22.51 0.13 2.64 16 7 C -0.22 -3.34 7.36 22.36 0.16 -3.18 16 8 C -0.08 -0.91 10.04 22.25 0.22 -0.69 16 9 C -0.16 -2.16 9.70 22.28 0.22 -1.95 16 10 C -0.05 -0.90 5.88 -19.88 -0.12 -1.02 16 11 C -0.12 -1.31 10.01 71.24 0.71 -0.60 16 12 C -0.18 -3.99 9.64 22.37 0.22 -3.77 16 13 C 0.50 13.70 7.23 87.66 0.63 14.33 16 14 O -0.58 -23.31 16.12 16.03 0.26 -23.05 16 15 N -0.69 -14.42 5.22 -440.04 -2.30 -16.72 16 16 C 0.13 3.62 4.09 45.52 0.19 3.81 16 17 H 0.07 2.69 7.50 -2.38 -0.02 2.67 16 18 C -0.13 -3.29 7.58 31.12 0.24 -3.05 16 19 C 0.15 5.30 4.57 45.58 0.21 5.50 16 20 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 21 N -0.74 -34.49 5.11 -320.16 -1.64 -36.13 16 22 C -0.23 -13.08 10.45 84.03 0.88 -12.20 16 23 H 0.07 4.04 8.06 -2.91 -0.02 4.02 16 24 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 25 N -0.98 -63.48 13.97 21.65 0.30 -63.18 16 26 Si 0.95 47.40 27.74 68.60 1.90 49.30 16 27 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 28 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 29 H -0.27 -12.64 6.52 99.48 0.65 -11.99 16 30 C -0.17 -5.44 7.69 31.18 0.24 -5.20 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.49 6.73 -2.39 -0.02 0.48 16 33 H 0.04 0.63 6.53 -2.39 -0.02 0.61 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.83 7.43 -2.39 -0.02 0.81 16 36 H 0.15 1.51 4.28 -2.91 -0.01 1.50 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 41 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 42 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 43 H 0.42 4.61 8.07 -92.71 -0.75 3.86 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.13 2.04 8.11 -2.38 -0.02 2.02 16 46 H 0.36 16.86 5.76 -92.71 -0.53 16.33 16 47 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 48 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -83.45 393.49 2.74 -80.72 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.37 Total: 27.73 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 5.25 Total: -9.71 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.63 Total: -116.03 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.41 Total: -32.01 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 1.90 Total: 49.30 kcal Total: -83.45 2.74 -80.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752671023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.083 kcal (2) G-P(sol) polarization free energy of solvation -83.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds